Wall clock time and date at job start Tue Mar 31 2020 19:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48493 * 109.47487 * 270.00298 * 3 2 1 5 5 H 1.48496 * 109.46900 * 30.00788 * 3 2 1 6 6 H 1.48502 * 109.46945 * 150.00216 * 3 2 1 7 7 C 1.37872 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00085 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99887 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99874 * 180.02562 * 11 10 9 13 13 O 1.21609 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.47412 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.38056 * 126.41648 * 0.02562 * 14 12 11 16 16 N 1.34247 * 107.42796 * 180.24736 * 15 14 12 17 17 H 0.96995 * 125.74765 * 179.75133 * 16 15 14 18 18 N 1.39939 * 108.50611 * 359.63872 * 16 15 14 19 19 C 1.30486 * 108.89158 * 0.36763 * 18 16 15 20 20 I 2.09510 * 125.99507 * 179.81588 * 19 18 16 21 21 H 0.96995 * 120.00080 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46673 * 60.00388 * 9 7 2 23 23 H 1.08996 * 109.47208 * 299.99712 * 9 7 2 24 24 H 1.09004 * 109.46644 * 60.00361 * 10 9 7 25 25 H 1.09000 * 109.47121 * 300.00582 * 10 9 7 26 26 H 0.97000 * 120.00165 * 359.97438 * 11 10 9 27 27 H 1.08002 * 126.28310 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0009 12 6 6.1605 -3.8036 -0.0014 13 8 5.5525 -4.8568 -0.0022 14 6 7.6346 -3.8036 -0.0007 15 6 8.4542 -2.6926 0.0008 16 7 9.7236 -3.1294 -0.0047 17 1 10.5155 -2.5694 -0.0085 18 7 9.7118 -4.5287 -0.0013 19 6 8.4737 -4.9408 -0.0020 20 53 7.8408 -6.9380 -0.0034 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6580 -3.1504 -0.8908 25 1 3.6586 -3.1501 0.8892 26 1 5.9715 -1.7963 -0.0014 27 1 8.1330 -1.6614 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897367355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:52 Heat of formation + Delta-G solvation = 20.993354 kcal Electronic energy + Delta-G solvation = -14411.622310 eV Core-core repulsion = 11643.268629 eV Total energy + Delta-G solvation = -2768.353681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.987 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.55611 -40.09066 -36.55044 -34.77085 -33.81411 -32.54599 -30.99601 -29.95858 -26.85050 -24.13111 -22.69872 -21.93563 -20.99809 -19.50089 -18.92294 -17.46755 -16.58891 -16.38234 -16.17451 -15.82657 -15.19568 -14.88717 -14.60685 -14.48658 -13.61791 -13.28256 -12.98244 -12.37225 -12.12204 -12.10216 -11.90347 -11.71069 -11.47991 -11.30404 -10.74364 -10.53052 -10.44526 -10.15617 -9.79389 -8.25335 -6.32488 -0.24262 0.44923 0.71722 1.42378 1.45909 1.56808 1.87612 2.39179 2.41209 2.41380 3.10065 3.48611 3.89786 4.15161 4.29864 4.49556 4.52944 4.78517 4.83456 5.24624 5.48759 5.50987 5.71403 5.99883 6.24696 6.27772 6.71649 6.78961 7.31825 7.39875 8.91618 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.003423 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.750224 B = 8177.141155 C = 9103.444527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.230 1.230 7 C -0.538 4.538 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.149 3.851 11 N -0.710 5.710 12 C 0.576 3.424 13 O -0.565 6.565 14 C -0.294 4.294 15 C 0.148 3.852 16 N -0.430 5.430 17 H 0.467 0.533 18 N -0.280 5.280 19 C 0.090 3.910 20 I 0.067 6.933 21 H 0.266 0.734 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.412 0.588 27 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.011 -6.654 0.027 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.153 1.153 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.025 3.975 11 N -0.362 5.362 12 C 0.363 3.637 13 O -0.444 6.444 14 C -0.312 4.312 15 C -0.007 4.007 16 N -0.139 5.139 17 H 0.318 0.682 18 N -0.104 5.104 19 C -0.215 4.215 20 I 0.207 6.793 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.248 0.752 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 27.266 -8.968 0.029 28.703 hybrid contribution -0.433 2.439 -0.026 2.477 sum 26.834 -6.529 0.003 27.617 Atomic orbital electron populations 1.70091 1.08733 1.28343 1.52222 1.26135 0.95691 1.04051 0.93778 0.85519 0.79856 0.77072 0.79281 1.19047 1.21708 1.15287 1.21295 0.91860 0.93246 1.51240 0.95514 1.19651 0.94135 0.92981 0.98206 1.20986 0.78206 0.98314 0.99971 1.45771 1.07198 1.08363 1.74909 1.17574 0.86143 0.83923 0.76053 1.90819 1.70096 1.31933 1.51557 1.20216 0.93861 0.92869 1.24227 1.23867 0.83459 1.00908 0.92469 1.46284 1.08616 1.04640 1.54395 0.68229 1.77206 1.18534 0.90907 1.23755 1.27168 0.92524 0.99162 1.02693 1.96724 1.89743 0.94259 1.98569 0.92477 0.94237 0.94389 0.93855 0.93853 0.75184 0.73959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.98 13.96 21.45 0.30 -58.68 15 2 C 0.00 0.00 5.47 84.65 0.46 0.47 15 3 Si 0.96 40.76 27.47 68.60 1.88 42.64 15 4 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.23 -8.37 6.54 99.48 0.65 -7.72 15 7 C -0.54 -30.03 9.66 25.60 0.25 -29.78 15 8 H 0.03 1.69 7.99 -2.91 -0.02 1.67 15 9 C -0.01 -0.50 4.16 29.85 0.12 -0.38 15 10 C 0.15 5.79 5.61 86.38 0.48 6.28 15 11 N -0.71 -20.45 5.54 -466.39 -2.59 -23.04 15 12 C 0.58 17.90 7.81 86.66 0.68 18.57 15 13 O -0.56 -22.00 15.06 -4.06 -0.06 -22.06 15 14 C -0.29 -7.00 6.13 -20.14 -0.12 -7.12 15 15 C 0.15 1.82 11.52 84.28 0.97 2.79 15 16 N -0.43 -5.00 7.28 -56.31 -0.41 -5.41 15 17 H 0.47 1.27 8.96 -213.43 -1.91 -0.64 15 18 N -0.28 -5.98 12.63 -58.33 -0.74 -6.72 15 19 C 0.09 2.30 7.72 85.65 0.66 2.96 15 20 I 0.07 1.76 38.78 -18.82 -0.73 1.03 15 21 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 22 H 0.04 1.54 7.20 -2.39 -0.02 1.52 15 23 H 0.04 1.46 7.57 -2.39 -0.02 1.44 15 24 H 0.04 1.85 8.14 -2.38 -0.02 1.83 15 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.41 8.16 7.39 -92.71 -0.69 7.47 15 27 H 0.24 0.41 7.46 -2.91 -0.02 0.39 15 Total: -1.00 -77.65 270.73 -0.26 -77.91 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.42 Total: 0.53 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 3.50 Total: -6.21 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.43 Total: -93.84 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.64 kcal Atomic # 53 Polarization: 1.76 SS G_CDS: -0.73 Total: 1.03 kcal Total: -77.65 -0.26 -77.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897367355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.904 kcal (2) G-P(sol) polarization free energy of solvation -77.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds