Wall clock time and date at job start Tue Mar 31 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47651 * 2 1 4 4 C 1.52999 * 109.47388 * 239.99627 * 2 1 3 5 5 C 1.53004 * 109.47026 * 119.99926 * 2 1 3 6 6 H 1.08995 * 115.56110 * 274.31050 * 5 2 1 7 7 C 1.53082 * 117.49480 * 128.59662 * 5 2 1 8 8 C 1.52998 * 59.98266 * 252.51803 * 7 5 2 9 9 H 1.09005 * 117.49889 * 107.50674 * 8 7 5 10 10 C 1.50700 * 117.49964 * 252.49682 * 8 7 5 11 11 O 1.21280 * 120.00046 * 68.74714 * 10 8 7 12 12 N 1.34777 * 120.00123 * 248.75161 * 10 8 7 13 13 C 1.48106 * 127.84235 * 179.97438 * 12 10 8 14 14 C 1.54325 * 104.71471 * 140.19100 * 13 12 10 15 15 C 1.52994 * 112.92090 * 146.34211 * 14 13 12 16 16 C 1.53761 * 109.07499 * 271.64287 * 14 13 12 17 17 N 1.47205 * 106.40391 * 130.77632 * 16 14 13 18 18 C 1.36938 * 126.69890 * 148.93662 * 17 16 14 19 19 H 1.07997 * 120.00257 * 341.80317 * 18 17 16 20 20 C 1.38812 * 119.99991 * 161.81311 * 18 17 16 21 21 N 1.31620 * 120.00323 * 159.65135 * 20 18 17 22 22 Si 1.86805 * 119.99775 * 339.64986 * 20 18 17 23 23 H 1.48502 * 109.47093 * 84.67323 * 22 20 18 24 24 H 1.48500 * 109.47191 * 204.67265 * 22 20 18 25 25 H 1.48494 * 109.47225 * 324.67600 * 22 20 18 26 26 C 1.47201 * 106.59523 * 328.67338 * 17 16 14 27 27 C 1.53759 * 106.40611 * 31.33455 * 26 17 16 28 28 C 1.52991 * 112.06597 * 103.40974 * 27 26 17 29 29 C 1.48103 * 127.84497 * 359.95833 * 12 10 8 30 30 H 1.08996 * 109.47348 * 300.00128 * 1 2 3 31 31 H 1.09005 * 109.46761 * 60.00217 * 1 2 3 32 32 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47308 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46706 * 300.00303 * 3 2 1 35 35 H 1.08996 * 109.46849 * 59.99567 * 3 2 1 36 36 H 1.08998 * 109.47097 * 300.00717 * 4 2 1 37 37 H 1.09005 * 109.47042 * 60.00328 * 4 2 1 38 38 H 1.09000 * 109.47454 * 180.02562 * 4 2 1 39 39 H 1.08998 * 117.51068 * 145.03543 * 7 5 2 40 40 H 1.09001 * 117.50850 * 0.02562 * 7 5 2 41 41 H 1.08998 * 110.39340 * 21.38326 * 13 12 10 42 42 H 1.09005 * 110.48977 * 259.04472 * 13 12 10 43 43 H 1.08994 * 109.47589 * 301.84368 * 15 14 13 44 44 H 1.09007 * 109.47126 * 61.83921 * 15 14 13 45 45 H 1.08993 * 109.46965 * 181.83874 * 15 14 13 46 46 H 1.08995 * 110.06813 * 11.54081 * 16 14 13 47 47 H 1.08998 * 110.06930 * 250.01186 * 16 14 13 48 48 H 0.97001 * 119.99569 * 179.97438 * 21 20 18 49 49 H 1.09000 * 110.06915 * 150.57131 * 26 17 16 50 50 H 1.09003 * 110.06690 * 272.04385 * 26 17 16 51 51 H 1.09003 * 109.47948 * 61.01345 * 28 27 26 52 52 H 1.09000 * 109.47567 * 181.01234 * 28 27 26 53 53 H 1.09004 * 109.46918 * 301.01299 * 28 27 26 54 54 H 1.09007 * 110.39316 * 101.00954 * 29 12 10 55 55 H 1.09000 * 110.39410 * 338.62535 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 2.1270 -0.1061 2.1448 7 6 3.0742 -1.8323 1.0512 8 6 1.6356 -2.1852 1.4343 9 1 1.0059 -2.6344 0.6662 10 6 1.3881 -2.6663 2.8408 11 8 1.5103 -1.9011 3.7738 12 7 1.0312 -3.9470 3.0620 13 6 0.7481 -4.6001 4.3609 14 6 -0.4619 -5.5167 4.0833 15 6 -0.4347 -6.8054 4.9075 16 6 -1.7577 -4.7184 4.3019 17 7 -2.5944 -4.9501 3.1131 18 6 -3.9628 -4.9759 3.0678 19 1 -4.5307 -5.1113 3.9763 20 6 -4.6199 -4.8283 1.8540 21 7 -5.8634 -5.2400 1.7245 22 14 -3.7395 -4.0454 0.4044 23 1 -2.9427 -5.0772 -0.3068 24 1 -4.7395 -3.4635 -0.5266 25 1 -2.8364 -2.9732 0.8941 26 6 -1.6728 -5.1422 1.9814 27 6 -0.4063 -5.7953 2.5588 28 6 -0.3380 -7.2916 2.2470 29 6 0.8326 -5.0207 2.0614 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.8417 -1.9480 1.8164 40 1 3.3913 -2.0489 0.0310 41 1 0.4944 -3.8539 5.1138 42 1 1.6049 -5.1903 4.6859 43 1 0.4842 -7.3522 4.6967 44 1 -0.4755 -6.5590 5.9686 45 1 -1.2935 -7.4229 4.6446 46 1 -1.5311 -3.6566 4.3986 47 1 -2.2704 -5.0747 5.1953 48 1 -6.3226 -5.1364 0.8764 49 1 -2.1257 -5.7976 1.2374 50 1 -1.4269 -4.1801 1.5318 51 1 -0.3152 -7.4372 1.1670 52 1 0.5641 -7.7142 2.6896 53 1 -1.2141 -7.7896 2.6623 54 1 1.7030 -5.6762 2.0298 55 1 0.6429 -4.5924 1.0772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982363792.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:01 Heat of formation + Delta-G solvation = -7.572901 kcal Electronic energy + Delta-G solvation = -31789.877241 eV Core-core repulsion = 28020.187221 eV Total energy + Delta-G solvation = -3769.690020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.08032 -40.76568 -38.98242 -36.74145 -34.90174 -34.57048 -33.22646 -33.12608 -28.78564 -28.40240 -28.17610 -27.93710 -27.09320 -26.98890 -24.80425 -23.87247 -23.40115 -22.03627 -20.33870 -19.59443 -19.39338 -18.76884 -18.18654 -17.21251 -16.96598 -16.74293 -16.36374 -16.02204 -15.60931 -15.29927 -15.14123 -14.95917 -14.82272 -14.61757 -14.39569 -14.25758 -13.96829 -13.57363 -13.54425 -13.50812 -13.22659 -13.17275 -12.97327 -12.94931 -12.66498 -12.61003 -12.51230 -12.47053 -12.34866 -12.20403 -12.08702 -12.02403 -11.74200 -11.55356 -11.51532 -11.34266 -11.25783 -11.18686 -10.96981 -10.90870 -10.84866 -9.76283 -9.14441 -8.23016 -5.50014 1.17841 1.30950 1.38502 1.41003 1.88497 2.33117 2.77552 2.99057 3.19379 3.26168 3.45002 3.59539 3.68716 3.69173 3.77697 3.92257 4.01311 4.08254 4.19046 4.20979 4.22630 4.26310 4.29747 4.50049 4.52651 4.61430 4.67579 4.69716 4.70000 4.72757 4.75693 4.77544 4.81225 4.87683 4.88253 4.91022 4.99677 5.00286 5.01006 5.04972 5.06774 5.13127 5.17109 5.21594 5.28307 5.31626 5.32494 5.37549 5.40960 5.49911 5.58845 5.64558 6.04627 6.49685 6.68467 7.07189 7.46748 8.07836 8.97093 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.004907 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.165609 B = 5704.737086 C = 7311.735176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.135 4.135 4 C -0.144 4.144 5 C -0.113 4.113 6 H 0.093 0.907 7 C -0.118 4.118 8 C -0.199 4.199 9 H 0.123 0.877 10 C 0.557 3.443 11 O -0.590 6.590 12 N -0.618 5.618 13 C 0.121 3.879 14 C -0.071 4.071 15 C -0.117 4.117 16 C 0.141 3.859 17 N -0.619 5.619 18 C -0.230 4.230 19 H 0.060 0.940 20 C -0.033 4.033 21 N -0.955 5.955 22 Si 0.942 3.058 23 H -0.259 1.259 24 H -0.307 1.307 25 H -0.282 1.282 26 C 0.119 3.881 27 C -0.077 4.077 28 C -0.119 4.119 29 C 0.117 3.883 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.051 0.949 46 H -0.001 1.001 47 H 0.046 0.954 48 H 0.263 0.737 49 H 0.046 0.954 50 H 0.009 0.991 51 H 0.063 0.937 52 H 0.095 0.905 53 H 0.049 0.951 54 H 0.118 0.882 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.260 1.624 -5.058 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.192 4.192 4 C -0.201 4.201 5 C -0.131 4.131 6 H 0.111 0.889 7 C -0.155 4.155 8 C -0.220 4.220 9 H 0.141 0.859 10 C 0.348 3.652 11 O -0.471 6.471 12 N -0.349 5.349 13 C -0.002 4.002 14 C -0.073 4.073 15 C -0.174 4.174 16 C 0.015 3.985 17 N -0.343 5.343 18 C -0.359 4.359 19 H 0.078 0.922 20 C -0.228 4.228 21 N -0.602 5.602 22 Si 0.771 3.229 23 H -0.185 1.185 24 H -0.236 1.236 25 H -0.208 1.208 26 C -0.006 4.006 27 C -0.079 4.079 28 C -0.176 4.176 29 C -0.006 4.006 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.156 0.844 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.017 0.983 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.026 0.974 51 H 0.082 0.918 52 H 0.114 0.886 53 H 0.068 0.932 54 H 0.135 0.865 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.105 2.119 -4.674 24.645 hybrid contribution -1.305 0.832 -0.254 1.568 sum 22.800 2.951 -4.928 23.512 Atomic orbital electron populations 1.21904 0.95861 1.00880 1.01594 1.20108 0.94091 0.96257 0.93209 1.21805 1.01738 0.93760 1.01873 1.22025 1.02133 1.00024 0.95949 1.22460 1.02213 0.88794 0.99679 0.88885 1.23316 0.88608 0.99066 1.04509 1.22194 1.03673 1.02237 0.93918 0.85926 1.19783 0.75187 0.79636 0.90568 1.90642 1.55102 1.54845 1.46508 1.48871 1.66850 1.09050 1.10120 1.22406 0.97270 0.94786 0.85717 1.22235 0.93247 0.96446 0.95413 1.21624 1.03095 0.93986 0.98677 1.21583 0.91291 0.95362 0.90224 1.44875 1.00871 1.83079 1.05483 1.18605 0.80235 1.42248 0.94779 0.92213 1.25540 0.96119 1.01165 0.99927 1.69927 1.13612 1.50325 1.26368 0.86018 0.77084 0.79673 0.80110 1.18481 1.23592 1.20788 1.21918 0.90974 0.96379 0.91330 1.22310 0.93424 0.97607 0.94596 1.21653 1.03075 0.90833 1.02081 1.22649 0.97678 0.88296 0.91961 0.94248 0.91206 0.94518 0.91163 0.91451 0.93607 0.92756 0.91703 0.90237 0.88342 0.84391 0.92173 0.87534 0.88991 0.91837 0.92977 0.98297 0.93579 0.92810 0.93546 0.97356 0.91752 0.88643 0.93209 0.86458 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.31 71.98 0.60 -2.98 16 2 C -0.04 -0.71 0.88 -52.18 -0.05 -0.76 16 3 C -0.13 -2.22 8.46 71.98 0.61 -1.61 16 4 C -0.14 -2.11 7.07 71.98 0.51 -1.60 16 5 C -0.11 -2.59 4.67 -10.77 -0.05 -2.64 16 6 H 0.09 2.59 7.64 -2.39 -0.02 2.57 16 7 C -0.12 -2.08 9.27 30.62 0.28 -1.80 16 8 C -0.20 -5.02 4.43 -11.54 -0.05 -5.07 16 9 H 0.12 3.03 5.99 -2.38 -0.01 3.02 16 10 C 0.56 18.04 7.70 87.66 0.67 18.71 16 11 O -0.59 -23.52 16.52 -3.03 -0.05 -23.57 16 12 N -0.62 -17.78 3.31 -808.36 -2.68 -20.45 16 13 C 0.12 3.28 5.92 86.52 0.51 3.79 16 14 C -0.07 -2.10 1.08 -50.77 -0.05 -2.16 16 15 C -0.12 -2.67 7.53 71.98 0.54 -2.13 16 16 C 0.14 5.84 6.37 86.50 0.55 6.39 16 17 N -0.62 -30.56 3.21 -695.48 -2.23 -32.79 16 18 C -0.23 -13.65 10.66 84.03 0.90 -12.76 16 19 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 20 C -0.03 -1.99 5.45 84.86 0.46 -1.53 16 21 N -0.96 -61.18 13.97 21.65 0.30 -60.87 16 22 Si 0.94 48.17 24.36 68.60 1.67 49.84 16 23 H -0.26 -12.01 6.37 99.48 0.63 -11.38 16 24 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 25 H -0.28 -14.56 6.49 99.48 0.65 -13.91 16 26 C 0.12 4.97 3.88 86.50 0.34 5.31 16 27 C -0.08 -2.24 1.08 -50.76 -0.05 -2.30 16 28 C -0.12 -2.73 7.53 71.98 0.54 -2.19 16 29 C 0.12 2.72 5.79 86.53 0.50 3.22 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.03 7.29 -2.39 -0.02 1.01 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.83 7.07 -2.39 -0.02 0.81 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 0.87 6.97 -2.39 -0.02 0.85 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.14 1.64 5.85 -2.39 -0.01 1.63 16 41 H 0.06 1.92 7.39 -2.39 -0.02 1.90 16 42 H 0.11 2.13 7.99 -2.38 -0.02 2.12 16 43 H 0.09 1.46 7.15 -2.39 -0.02 1.44 16 44 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.05 1.40 7.10 -2.39 -0.02 1.39 16 46 H 0.00 -0.04 7.45 -2.39 -0.02 -0.06 16 47 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 48 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 49 H 0.05 2.08 5.49 -2.39 -0.01 2.07 16 50 H 0.01 0.39 5.46 -2.39 -0.01 0.38 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.09 1.46 7.17 -2.39 -0.02 1.44 16 53 H 0.05 1.37 7.08 -2.39 -0.02 1.36 16 54 H 0.12 1.81 7.99 -2.38 -0.02 1.79 16 55 H 0.08 1.87 6.29 -2.39 -0.02 1.85 16 Total: -1.00 -77.88 402.29 4.49 -73.39 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.72 Total: 16.54 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.76 Total: -2.09 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.61 Total: -114.12 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.67 Total: 49.84 kcal Total: -77.88 4.49 -73.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982363792.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.816 kcal (2) G-P(sol) polarization free energy of solvation -77.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds