Wall clock time and date at job start Tue Mar 31 2020 19:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00213 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00376 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.84975 * 25.33120 * 10 9 7 12 12 C 1.53778 * 113.62124 * 156.52984 * 10 9 7 13 13 C 1.53780 * 87.08651 * 139.97935 * 12 10 9 14 14 H 1.08999 * 113.61507 * 220.02393 * 13 12 10 15 15 N 1.46494 * 113.61272 * 89.20067 * 13 12 10 16 16 C 1.34777 * 120.00018 * 155.00233 * 15 13 12 17 17 O 1.21660 * 119.99607 * 0.02562 * 16 15 13 18 18 C 1.47076 * 120.00417 * 180.02562 * 16 15 13 19 19 N 1.33583 * 122.55405 * 359.71310 * 18 16 15 20 20 C 1.28955 * 115.83702 * 179.75742 * 19 18 16 21 21 Cl 1.73595 * 125.22195 * 180.24698 * 20 19 18 22 22 S 1.75968 * 109.55331 * 0.48059 * 20 19 18 23 23 C 1.35198 * 122.56058 * 180.02562 * 18 16 15 24 24 Cl 1.73603 * 125.46710 * 0.03281 * 23 18 16 25 25 C 1.53788 * 113.61443 * 254.13524 * 10 9 7 26 26 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 27 27 H 0.97009 * 120.00147 * 359.97438 * 9 7 2 28 28 H 1.09005 * 113.61827 * 254.53214 * 12 10 9 29 29 H 1.09004 * 113.61356 * 25.42755 * 12 10 9 30 30 H 0.97005 * 120.00304 * 335.00259 * 15 13 12 31 31 H 1.08992 * 113.61205 * 334.56814 * 25 10 9 32 32 H 1.08997 * 113.61230 * 105.46769 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5376 -3.2913 -0.4291 12 6 5.5396 -2.3581 -0.5595 13 6 5.9718 -3.3167 0.5626 14 1 6.9280 -3.0556 1.0159 15 7 5.8855 -4.7313 0.1915 16 6 6.6617 -5.6400 0.8145 17 8 7.4337 -5.2855 1.6854 18 6 6.5756 -7.0601 0.4416 19 7 5.7425 -7.5060 -0.5026 20 6 5.7770 -8.7752 -0.7286 21 17 4.8071 -9.6099 -1.9017 22 16 6.9532 -9.5319 0.3393 23 6 7.3290 -8.0145 1.0326 24 17 8.4911 -7.7434 2.2934 25 6 4.7532 -2.8120 1.3567 26 1 -0.4850 0.8401 -0.0004 27 1 3.8647 -0.3621 0.0007 28 1 5.6506 -2.7779 -1.5593 29 1 5.9666 -1.3592 -0.4690 30 1 5.2696 -5.0140 -0.5027 31 1 4.9647 -1.9376 1.9720 32 1 4.2301 -3.5978 1.9016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020463851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:36 Heat of formation + Delta-G solvation = 23.172883 kcal Electronic energy + Delta-G solvation = -20979.948364 eV Core-core repulsion = 17348.029384 eV Total energy + Delta-G solvation = -3631.918980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 335.000 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.86746 -40.53202 -39.13434 -38.22668 -37.98747 -35.88331 -34.16806 -32.45374 -31.56294 -27.56556 -26.58047 -26.17326 -24.30324 -23.33456 -21.37866 -20.73721 -20.48455 -19.46432 -18.10624 -17.73432 -17.07530 -16.91621 -16.52241 -16.19866 -15.98019 -15.53417 -15.42442 -14.87910 -14.40230 -14.11245 -13.93012 -13.73150 -13.62314 -13.35127 -12.88687 -12.78460 -12.66688 -12.60170 -12.42731 -12.10382 -11.85584 -11.78567 -11.47002 -11.27135 -11.02161 -10.89903 -10.77865 -10.24842 -9.96692 -9.28181 -8.02187 -5.35742 -1.15169 -0.92014 -0.12472 0.31300 0.46879 0.88651 1.39344 1.42932 1.50116 1.97597 2.02752 2.49367 2.92926 3.27667 3.48184 3.60284 3.70331 3.77458 4.05184 4.22979 4.25118 4.65965 4.87272 4.89652 5.08051 5.14610 5.18790 5.56838 5.73299 5.77545 6.22634 6.39937 6.99144 7.08081 7.84358 8.04042 9.19384 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.002765 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.045047 B =10124.785451 C =11457.511328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.249 1.249 6 H -0.298 1.298 7 C -0.235 4.235 8 H 0.055 0.945 9 N -0.740 5.740 10 C 0.152 3.848 11 H 0.073 0.927 12 C -0.140 4.140 13 C 0.133 3.867 14 H 0.107 0.893 15 N -0.683 5.683 16 C 0.587 3.413 17 O -0.541 6.541 18 C 0.012 3.988 19 N -0.434 5.434 20 C 0.070 3.930 21 Cl 0.063 6.937 22 S 0.365 5.635 23 C -0.169 4.169 24 Cl 0.049 6.951 25 C -0.172 4.172 26 H 0.258 0.742 27 H 0.368 0.632 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.085 0.915 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.441 -24.560 -1.572 31.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.174 1.174 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.382 5.382 10 C 0.043 3.957 11 H 0.091 0.909 12 C -0.179 4.179 13 C 0.027 3.973 14 H 0.125 0.875 15 N -0.334 5.334 16 C 0.370 3.630 17 O -0.419 6.419 18 C -0.125 4.125 19 N -0.152 5.152 20 C -0.234 4.234 21 Cl 0.090 6.910 22 S 0.617 5.383 23 C -0.321 4.321 24 Cl 0.078 6.922 25 C -0.213 4.213 26 H 0.066 0.934 27 H 0.202 0.798 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.252 0.748 31 H 0.104 0.896 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.740 -25.103 -1.128 32.582 hybrid contribution -0.619 1.928 0.017 2.025 sum 20.122 -23.174 -1.111 30.711 Atomic orbital electron populations 1.69898 1.07251 1.26700 1.59693 1.25549 0.96139 1.01417 1.02595 0.85383 0.78687 0.79361 0.78177 1.20231 1.17368 1.22527 1.19092 0.82843 0.93413 1.41252 0.92687 1.42713 1.02403 1.03872 1.89173 1.21942 0.90971 0.88088 0.94690 0.90860 1.23705 0.95560 1.00090 0.98587 1.21683 0.99149 0.79295 0.97188 0.87536 1.45490 1.41265 1.06712 1.39893 1.17109 0.80677 0.83625 0.81548 1.90861 1.39152 1.80101 1.31765 1.19965 0.98306 0.96277 0.98000 1.66868 1.20149 1.13001 1.15221 1.28248 1.01583 0.92487 1.01130 1.98482 1.67327 1.72495 1.52651 1.83929 1.29503 0.99993 1.24904 1.26625 1.02312 1.01032 1.02111 1.98448 1.52635 1.95982 1.45136 1.24192 0.97223 1.00652 0.99263 0.93372 0.79778 0.89467 0.87747 0.74834 0.89640 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.56 13.97 21.65 0.30 -63.25 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.96 45.29 27.74 68.60 1.90 47.19 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.25 -10.54 6.52 99.48 0.65 -9.90 16 6 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 7 C -0.23 -13.40 10.45 84.03 0.88 -12.52 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.74 -33.92 5.21 -320.45 -1.67 -35.59 16 10 C 0.15 5.56 4.35 45.52 0.20 5.75 16 11 H 0.07 2.79 8.11 -2.38 -0.02 2.77 16 12 C -0.14 -3.83 7.58 31.12 0.24 -3.60 16 13 C 0.13 3.65 4.33 45.58 0.20 3.84 16 14 H 0.11 2.91 7.46 -2.39 -0.02 2.89 16 15 N -0.68 -18.00 5.26 -443.35 -2.33 -20.33 16 16 C 0.59 16.19 7.79 86.56 0.67 16.86 16 17 O -0.54 -17.13 14.42 -4.22 -0.06 -17.19 16 18 C 0.01 0.27 6.66 40.50 0.27 0.54 16 19 N -0.43 -9.26 10.08 -179.95 -1.81 -11.08 16 20 C 0.07 1.11 8.28 130.66 1.08 2.20 16 21 Cl 0.06 0.82 29.33 -2.72 -0.08 0.74 16 22 S 0.37 4.06 23.19 -56.49 -1.31 2.75 16 23 C -0.17 -3.19 6.94 67.12 0.47 -2.72 16 24 Cl 0.05 0.97 27.15 -2.72 -0.07 0.89 16 25 C -0.17 -5.70 7.69 31.18 0.24 -5.46 16 26 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 27 H 0.37 15.98 5.77 -92.70 -0.53 15.45 16 28 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.10 2.66 8.11 -2.38 -0.02 2.64 16 30 H 0.41 10.27 8.18 -92.70 -0.76 9.51 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.92 325.07 -0.57 -71.49 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.14 Total: 22.90 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.71 Total: 1.47 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.51 Total: -130.25 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.06 Total: -17.19 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.75 kcal Atomic # 17 Polarization: 1.79 SS G_CDS: -0.15 Total: 1.64 kcal Total: -70.92 -0.57 -71.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020463851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.660 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds