Wall clock time and date at job start Tue Mar 31 2020 18:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52838 * 1 3 3 H 1.11144 * 106.60419 * 2 1 4 4 C 1.52207 * 110.62691 * 115.96311 * 2 1 3 5 5 C 1.52758 * 110.76415 * 74.56194 * 4 2 1 6 6 H 1.08698 * 110.34127 * 299.45516 * 5 4 2 7 7 C 1.53351 * 109.11076 * 179.91490 * 5 4 2 8 8 C 1.50699 * 109.46703 * 66.12629 * 7 5 4 9 9 O 1.21275 * 120.00421 * 359.97438 * 8 7 5 10 10 N 1.34785 * 119.99688 * 180.02562 * 8 7 5 11 11 C 1.46504 * 119.99747 * 179.97438 * 10 8 7 12 12 H 1.08999 * 115.51703 * 9.58387 * 11 10 8 13 13 C 1.52994 * 117.44002 * 224.23763 * 11 10 8 14 14 H 1.09003 * 119.54133 * 4.12573 * 13 11 10 15 15 C 1.57704 * 116.10833 * 161.63904 * 13 11 10 16 16 N 1.48148 * 104.67138 * 87.30947 * 15 13 11 17 17 C 1.36931 * 127.83715 * 139.77485 * 16 15 13 18 18 H 1.08007 * 119.99794 * 344.33228 * 17 16 15 19 19 C 1.38809 * 120.00267 * 164.33598 * 17 16 15 20 20 N 1.31625 * 119.99778 * 350.56658 * 19 17 16 21 21 Si 1.86797 * 120.00357 * 170.56968 * 19 17 16 22 22 H 1.48507 * 109.47094 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47352 * 119.99720 * 21 19 17 24 24 H 1.48500 * 109.47251 * 240.00172 * 21 19 17 25 25 C 1.48139 * 104.32210 * 319.77469 * 16 15 13 26 26 C 1.53000 * 117.44036 * 154.99808 * 11 10 8 27 27 H 1.08996 * 119.53776 * 355.88748 * 26 11 10 28 28 C 1.52710 * 108.88862 * 60.88701 * 5 4 2 29 29 C 1.52469 * 110.81507 * 298.34831 * 28 5 4 30 30 C 1.54421 * 107.72311 * 171.60048 * 29 28 5 31 31 C 1.53113 * 110.03660 * 288.40637 * 29 28 5 32 32 C 1.51521 * 111.71050 * 242.98491 * 2 1 3 33 33 H 1.08993 * 109.47228 * 177.01192 * 1 2 3 34 34 H 1.09000 * 109.46950 * 297.01771 * 1 2 3 35 35 H 1.09004 * 109.46658 * 57.01092 * 1 2 3 36 36 H 1.09341 * 109.54880 * 314.07700 * 4 2 1 37 37 H 1.09326 * 109.58274 * 195.13122 * 4 2 1 38 38 H 1.08998 * 109.47165 * 186.12533 * 7 5 4 39 39 H 1.08999 * 109.47231 * 306.12435 * 7 5 4 40 40 H 0.96993 * 120.00034 * 359.97438 * 10 8 7 41 41 H 1.08999 * 110.91913 * 328.23154 * 15 13 11 42 42 H 1.08995 * 109.93284 * 205.88818 * 15 13 11 43 43 H 0.96995 * 119.99426 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.41036 * 280.80150 * 25 16 15 45 45 H 1.09007 * 110.40616 * 158.37135 * 25 16 15 46 46 H 1.09305 * 109.27933 * 59.00745 * 28 5 4 47 47 H 1.09308 * 109.27249 * 177.70474 * 28 5 4 48 48 H 1.09000 * 109.47029 * 60.00291 * 30 29 28 49 49 H 1.08997 * 109.46769 * 180.02562 * 30 29 28 50 50 H 1.09000 * 109.47076 * 299.99881 * 30 29 28 51 51 H 1.09000 * 109.47053 * 59.99901 * 31 29 28 52 52 H 1.09001 * 109.47009 * 179.97438 * 31 29 28 53 53 H 1.08995 * 109.46832 * 300.00187 * 31 29 28 54 54 H 1.10234 * 108.74198 * 155.36218 * 32 2 1 55 55 H 1.10207 * 108.81107 * 40.28529 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8460 1.0651 0.0000 4 6 2.0646 -0.6236 1.2807 5 6 1.8995 -2.1420 1.2541 6 1 0.8487 -2.4064 1.1675 7 6 2.4525 -2.7301 2.5579 8 6 1.5999 -2.2765 3.7148 9 8 0.6454 -1.5547 3.5183 10 7 1.8988 -2.6723 4.9681 11 6 1.0703 -2.2308 6.0928 12 1 0.1441 -1.7235 5.8230 13 6 1.7913 -1.7560 7.3559 14 1 2.8796 -1.6942 7.3625 15 6 0.9383 -0.8844 8.3558 16 7 0.2684 -1.8703 9.2356 17 6 0.0663 -1.7888 10.5875 18 1 0.6204 -1.0708 11.1740 19 6 -0.8506 -2.6289 11.2041 20 7 -1.6572 -3.3709 10.4752 21 14 -0.9401 -2.7063 13.0683 22 1 0.0651 -1.7814 13.6510 23 1 -2.2982 -2.3060 13.5158 24 1 -0.6585 -4.0926 13.5203 25 6 -0.1330 -2.9643 8.3210 26 6 1.0535 -3.1110 7.3442 27 1 1.5921 -4.0585 7.3421 28 6 2.6912 -2.7048 0.0757 29 6 2.1612 -2.1563 -1.2445 30 6 3.1343 -2.5950 -2.3603 31 6 0.7956 -2.7736 -1.5585 32 6 2.0889 -0.6394 -1.2541 33 1 -0.3633 -1.0262 -0.0536 34 1 -0.3633 0.4668 0.9155 35 1 -0.3633 0.5596 -0.8620 36 1 1.5227 -0.2186 2.1397 37 1 3.1242 -0.3787 1.3918 38 1 2.4378 -3.8185 2.5006 39 1 3.4768 -2.3878 2.7053 40 1 2.6624 -3.2493 5.1253 41 1 0.1990 -0.2891 7.8200 42 1 1.5948 -0.2388 8.9391 43 1 -2.2982 -3.9576 10.9061 44 1 -1.0397 -2.6939 7.7798 45 1 -0.2834 -3.8893 8.8779 46 1 3.7442 -2.4330 0.1857 47 1 2.6108 -3.7949 0.0748 48 1 3.1815 -3.6835 -2.3940 49 1 2.7814 -2.2164 -3.3196 50 1 4.1270 -2.1944 -2.1549 51 1 0.0940 -2.5284 -0.7612 52 1 0.4254 -2.3751 -2.5031 53 1 0.8952 -3.8563 -1.6346 54 1 3.1014 -0.2418 -1.4323 55 1 1.4810 -0.3222 -2.1169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026110224.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:28 Heat of formation + Delta-G solvation = -30.537222 kcal Electronic energy + Delta-G solvation = -29503.975182 eV Core-core repulsion = 25733.289354 eV Total energy + Delta-G solvation = -3770.685827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.35101 -40.46694 -39.45685 -36.09174 -35.05948 -34.41258 -34.08511 -32.13198 -28.88840 -28.68938 -28.38843 -27.41736 -27.30375 -27.00493 -23.80147 -22.47179 -21.93783 -21.55393 -20.92074 -20.72124 -18.92465 -18.84234 -17.79815 -17.58547 -16.76143 -16.28730 -16.24362 -15.75539 -15.49567 -15.21799 -15.16815 -15.03186 -14.70288 -14.62147 -14.25450 -14.03375 -13.74193 -13.57599 -13.36159 -13.24041 -13.09439 -12.96389 -12.88027 -12.75769 -12.67929 -12.44823 -12.34304 -12.08656 -12.00104 -11.96388 -11.87951 -11.82868 -11.67436 -11.61638 -11.53510 -11.11937 -10.97745 -10.88293 -10.74462 -10.62284 -10.46214 -9.63988 -8.94674 -7.93792 -5.30845 1.46118 1.46824 1.58218 1.66088 2.07037 2.47451 2.88128 3.27080 3.58733 3.68708 3.73279 3.75096 3.83661 3.95255 3.97338 4.07948 4.16443 4.25402 4.29058 4.30258 4.34083 4.39831 4.50586 4.56152 4.69916 4.75331 4.79820 4.82676 4.84036 4.88947 4.92393 4.93953 4.96156 4.97474 5.04452 5.10569 5.12498 5.16227 5.19189 5.26605 5.29358 5.30315 5.39964 5.41126 5.44731 5.52569 5.57161 5.58197 5.62356 5.64486 5.71367 5.73816 6.14440 6.62954 6.98202 7.35427 7.65015 8.43806 9.20487 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.001926 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.801944 B =14530.937435 C =14670.990297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.054 0.946 4 C -0.110 4.110 5 C -0.065 4.065 6 H 0.059 0.941 7 C -0.129 4.129 8 C 0.508 3.492 9 O -0.576 6.576 10 N -0.689 5.689 11 C 0.116 3.884 12 H 0.100 0.900 13 C -0.166 4.166 14 H 0.140 0.860 15 C 0.148 3.852 16 N -0.617 5.617 17 C -0.240 4.240 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.190 3.810 26 C -0.182 4.182 27 H 0.125 0.875 28 C -0.096 4.096 29 C -0.057 4.057 30 C -0.141 4.141 31 C -0.145 4.145 32 C -0.094 4.094 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.417 0.583 41 H 0.019 0.981 42 H 0.061 0.939 43 H 0.250 0.750 44 H -0.007 1.007 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.047 0.953 52 H 0.054 0.946 53 H 0.058 0.942 54 H 0.062 0.938 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.596 -0.091 -26.900 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.148 4.148 5 C -0.084 4.084 6 H 0.077 0.923 7 C -0.169 4.169 8 C 0.298 3.702 9 O -0.455 6.455 10 N -0.339 5.339 11 C 0.009 3.991 12 H 0.118 0.882 13 C -0.187 4.187 14 H 0.158 0.842 15 C 0.022 3.978 16 N -0.341 5.341 17 C -0.369 4.369 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.215 1.215 25 C 0.064 3.936 26 C -0.203 4.203 27 H 0.143 0.857 28 C -0.134 4.134 29 C -0.058 4.058 30 C -0.199 4.199 31 C -0.202 4.202 32 C -0.131 4.131 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.254 0.746 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.011 0.989 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.073 0.927 53 H 0.077 0.923 54 H 0.081 0.919 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.815 0.362 -26.859 30.206 hybrid contribution -0.584 -0.230 1.400 1.534 sum 13.231 0.132 -25.459 28.692 Atomic orbital electron populations 1.21885 0.96071 1.01686 1.00555 1.20728 0.95124 0.99194 0.94925 0.92711 1.21525 1.00618 0.95445 0.97185 1.20730 0.99735 0.95037 0.92880 0.92295 1.21922 1.00147 1.03852 0.90951 1.21534 0.85163 0.79192 0.84347 1.90683 1.31354 1.38391 1.85116 1.45323 1.31756 1.51770 1.05062 1.21351 0.95773 1.00461 0.81533 0.88210 1.24987 0.99266 0.97039 0.97404 0.84204 1.21825 0.93612 0.91254 0.91067 1.45435 1.67041 1.18143 1.03467 1.19435 1.17076 1.18378 0.81983 0.89897 1.25803 0.96597 1.00482 1.02956 1.70117 1.23673 1.30609 1.35242 0.84948 0.77299 0.77451 0.79206 1.18713 1.22001 1.21536 1.20780 0.91159 0.92895 0.88813 1.24297 1.01849 0.95948 0.98172 0.85699 1.21504 0.99478 1.00269 0.92106 1.20352 0.95633 0.94386 0.95381 1.22242 0.98643 1.01370 0.97616 1.22048 0.96567 1.00554 1.01022 1.21223 1.01176 0.94375 0.96342 0.92687 0.94675 0.92415 0.93200 0.91849 0.86440 0.86338 0.74577 0.96354 0.92019 0.94070 0.98902 0.92367 0.90758 0.91019 0.92256 0.92793 0.92319 0.93391 0.92722 0.92330 0.91913 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.92 71.93 0.64 -2.29 16 2 C -0.08 -1.44 2.60 -11.59 -0.03 -1.47 16 3 H 0.05 0.97 8.29 -1.23 -0.01 0.96 16 4 C -0.11 -2.14 4.37 30.25 0.13 -2.01 16 5 C -0.06 -1.09 1.66 -10.85 -0.02 -1.11 16 6 H 0.06 1.29 6.10 -2.55 -0.02 1.28 16 7 C -0.13 -1.89 5.14 29.97 0.15 -1.74 16 8 C 0.51 12.57 7.53 87.66 0.66 13.23 16 9 O -0.58 -19.78 13.58 -3.02 -0.04 -19.82 16 10 N -0.69 -16.32 5.56 -442.53 -2.46 -18.78 16 11 C 0.12 3.84 5.92 44.99 0.27 4.10 16 12 H 0.10 4.00 7.40 -2.39 -0.02 3.99 16 13 C -0.17 -5.62 7.34 -8.69 -0.06 -5.69 16 14 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 15 C 0.15 6.36 7.10 87.73 0.62 6.98 16 16 N -0.62 -32.59 3.38 -681.41 -2.30 -34.89 16 17 C -0.24 -13.63 10.35 84.03 0.87 -12.76 16 18 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 19 C -0.06 -3.72 5.39 84.86 0.46 -3.26 16 20 N -0.95 -57.87 10.88 21.65 0.24 -57.63 16 21 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 C 0.19 9.56 5.69 86.53 0.49 10.05 16 26 C -0.18 -6.73 6.98 -9.89 -0.07 -6.80 16 27 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 28 C -0.10 -1.12 3.77 30.32 0.11 -1.01 16 29 C -0.06 -0.70 0.71 -52.21 -0.04 -0.73 16 30 C -0.14 -1.34 8.08 72.46 0.59 -0.75 16 31 C -0.14 -1.95 8.00 72.02 0.58 -1.38 16 32 C -0.09 -1.27 4.12 29.74 0.12 -1.15 16 33 H 0.05 1.15 4.92 -2.39 -0.01 1.14 16 34 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 36 H 0.05 1.33 5.90 -2.21 -0.01 1.31 16 37 H 0.06 1.06 8.17 -2.21 -0.02 1.04 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 6.78 8.83 -92.71 -0.82 5.96 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.06 3.28 6.53 -2.38 -0.02 3.26 16 46 H 0.07 0.71 8.11 -2.22 -0.02 0.70 16 47 H 0.07 0.72 8.13 -2.22 -0.02 0.70 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.06 0.50 8.09 -2.39 -0.02 0.48 16 51 H 0.05 0.80 4.61 -2.39 -0.01 0.79 16 52 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 53 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.06 0.76 7.94 -1.73 -0.01 0.75 16 55 H 0.06 0.78 7.94 -1.74 -0.01 0.77 16 Total: -1.00 -71.74 410.80 3.00 -68.74 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.06 Total: 22.38 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.48 Total: -7.78 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.53 Total: -111.31 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.04 Total: -19.82 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.74 3.00 -68.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026110224.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.205 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds