Wall clock time and date at job start Tue Mar 31 2020 18:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.56018 * 2 1 4 4 C 1.53066 * 117.51399 * 214.29318 * 2 1 3 5 5 C 1.52995 * 117.49481 * 145.04009 * 4 2 1 6 6 C 1.53003 * 117.53698 * 359.97438 * 4 2 1 7 7 C 1.52998 * 117.49544 * 145.68381 * 2 1 3 8 8 C 1.53007 * 117.49580 * 215.00490 * 7 2 1 9 9 C 1.50696 * 117.50324 * 0.02562 * 7 2 1 10 10 O 1.21280 * 119.99665 * 99.87409 * 9 7 2 11 11 N 1.34775 * 120.00348 * 279.87658 * 9 7 2 12 12 C 1.47213 * 126.70155 * 355.40163 * 11 9 7 13 13 C 1.53772 * 106.38099 * 148.68697 * 12 11 9 14 14 H 1.09008 * 111.70845 * 256.37759 * 13 12 11 15 15 C 1.54319 * 109.06344 * 132.43014 * 13 12 11 16 16 C 1.55060 * 103.93219 * 221.16455 * 15 13 12 17 17 C 1.55053 * 102.11305 * 40.05507 * 16 15 13 18 18 H 1.09005 * 110.53422 * 78.69343 * 17 16 15 19 19 N 1.46500 * 110.53774 * 201.33152 * 17 16 15 20 20 C 1.36933 * 119.99506 * 271.63413 * 19 17 16 21 21 H 1.08007 * 120.00619 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99816 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99759 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00177 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47121 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.46986 * 299.99835 * 24 22 20 27 27 H 1.48498 * 109.47219 * 59.99727 * 24 22 20 28 28 C 1.54319 * 104.05896 * 320.01430 * 17 16 15 29 29 H 1.09000 * 111.69541 * 262.71923 * 28 17 16 30 30 C 1.47211 * 126.70423 * 175.35832 * 11 9 7 31 31 H 1.08996 * 109.47593 * 283.15101 * 1 2 3 32 32 H 1.08999 * 109.47014 * 43.15609 * 1 2 3 33 33 H 1.08998 * 109.46926 * 163.15040 * 1 2 3 34 34 H 1.08993 * 109.46743 * 195.81120 * 3 2 1 35 35 H 1.09004 * 109.46565 * 315.80794 * 3 2 1 36 36 H 1.08998 * 109.47139 * 75.80549 * 3 2 1 37 37 H 1.08996 * 109.47527 * 138.52379 * 5 4 2 38 38 H 1.09003 * 109.47186 * 258.52876 * 5 4 2 39 39 H 1.09004 * 109.47145 * 18.52402 * 5 4 2 40 40 H 1.08999 * 109.46614 * 345.58181 * 6 4 2 41 41 H 1.09004 * 109.46733 * 105.57640 * 6 4 2 42 42 H 1.08995 * 109.47308 * 225.58398 * 6 4 2 43 43 H 1.09005 * 109.46827 * 205.56066 * 8 7 2 44 44 H 1.08999 * 109.46757 * 325.55866 * 8 7 2 45 45 H 1.09002 * 109.46888 * 85.56145 * 8 7 2 46 46 H 1.09005 * 110.07357 * 29.45290 * 12 11 9 47 47 H 1.08997 * 110.07194 * 267.91542 * 12 11 9 48 48 H 1.08999 * 110.53795 * 102.55395 * 15 13 12 49 49 H 1.09000 * 110.53258 * 339.77392 * 15 13 12 50 50 H 1.08996 * 110.90557 * 281.84947 * 16 15 13 51 51 H 1.09005 * 110.93243 * 158.26802 * 16 15 13 52 52 H 0.96989 * 120.00207 * 91.62635 * 19 17 16 53 53 H 0.96996 * 119.99959 * 359.97438 * 23 22 20 54 54 H 1.09001 * 110.07194 * 330.54713 * 30 11 9 55 55 H 1.08994 * 110.07362 * 92.02707 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7649 5 6 3.5499 -0.7764 -1.4708 6 6 1.3607 -2.1580 -1.4710 7 6 2.2364 -1.1209 0.7651 8 6 3.5487 -0.7756 1.4721 9 6 1.3720 -2.1408 1.4605 10 8 1.1722 -3.2197 0.9438 11 7 0.8210 -1.8541 2.6566 12 6 1.0392 -0.6379 3.4569 13 6 -0.2690 -0.3830 4.2239 14 1 -0.8458 0.4279 3.7790 15 6 0.0615 -0.1020 5.7048 16 6 -1.0337 -0.8742 6.4849 17 6 -1.1504 -2.1870 5.6681 18 1 -0.3332 -2.8648 5.9149 19 7 -2.4429 -2.8317 5.9132 20 6 -2.5825 -3.7122 6.9526 21 1 -1.7398 -3.9318 7.5914 22 6 -3.8074 -4.3226 7.1852 23 7 -4.8343 -4.0555 6.4065 24 14 -3.9978 -5.5244 8.6027 25 1 -5.3921 -6.0342 8.6355 26 1 -3.0600 -6.6608 8.4175 27 1 -3.6924 -4.8340 9.8814 28 6 -1.0457 -1.7253 4.1993 29 1 -2.0283 -1.6151 3.7406 30 6 -0.1172 -2.6954 3.4175 31 1 -0.3634 0.2338 1.0006 32 1 -0.3633 0.7497 -0.7029 33 1 -0.3633 -0.9835 -0.2979 34 1 3.2389 1.2814 -0.2800 35 1 1.6821 2.0259 -0.7164 36 1 2.1196 1.8168 0.9963 37 1 4.2647 -1.5862 -1.3250 38 1 3.3650 -0.6425 -2.5366 39 1 3.9553 0.1455 -1.0537 40 1 0.3369 -2.0772 -1.1057 41 1 1.3784 -1.9770 -2.5457 42 1 1.7423 -3.1578 -1.2644 43 1 4.1546 -1.6761 1.5735 44 1 4.0932 -0.0354 0.8859 45 1 3.3330 -0.3696 2.4604 46 1 1.2600 0.2057 2.8029 47 1 1.8594 -0.7934 4.1577 48 1 -0.0008 0.9658 5.9146 49 1 1.0510 -0.4848 5.9550 50 1 -1.9760 -0.3264 6.4774 51 1 -0.7131 -1.0790 7.5064 52 1 -3.1997 -2.6347 5.3394 53 1 -4.7353 -3.4317 5.6703 54 1 -0.7122 -3.3031 2.7357 55 1 0.4306 -3.3363 4.1082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026432385.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:58 Heat of formation + Delta-G solvation = -21.489694 kcal Electronic energy + Delta-G solvation = -31221.260725 eV Core-core repulsion = 27450.967228 eV Total energy + Delta-G solvation = -3770.293497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.18596 -40.71861 -38.83892 -36.92564 -35.28943 -32.67198 -32.12046 -31.93949 -30.69269 -29.82049 -29.54752 -27.00573 -26.71319 -26.59047 -25.04697 -24.84416 -22.18666 -21.57951 -20.48954 -19.50777 -19.21814 -18.80658 -17.75471 -17.23165 -16.94240 -16.34988 -16.27289 -16.07263 -15.57121 -15.45295 -15.26893 -14.89416 -14.76177 -14.57286 -14.33145 -13.91081 -13.75459 -13.52326 -13.42941 -13.34631 -13.15938 -13.07501 -13.01685 -12.83638 -12.71094 -12.70242 -12.61306 -12.58814 -12.42758 -12.31065 -11.96705 -11.89034 -11.68674 -11.59585 -11.53483 -11.41344 -11.22220 -10.98353 -10.85410 -10.43375 -10.16213 -9.77655 -9.09686 -8.39682 -5.32825 1.50780 1.55881 1.65954 1.82012 1.86359 2.54868 2.69994 3.22187 3.37730 3.41793 3.49451 3.56561 3.61864 3.66060 3.89784 3.95861 4.08142 4.10609 4.13945 4.24246 4.36655 4.39645 4.46279 4.50337 4.53405 4.61801 4.62518 4.69530 4.72433 4.75734 4.77307 4.80014 4.85394 4.87019 4.90731 4.94266 4.98387 4.99861 5.04890 5.09289 5.11644 5.13615 5.17949 5.21587 5.27797 5.30794 5.38158 5.40280 5.43032 5.49529 5.60934 5.64961 6.48656 6.53388 7.09387 7.11153 7.99566 8.11334 9.12335 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.002852 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.641524 B = 9815.507045 C =10352.200450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.119 4.119 4 C -0.094 4.094 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.154 4.154 8 C -0.110 4.110 9 C 0.561 3.439 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.110 3.890 13 C -0.090 4.090 14 H 0.102 0.898 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.180 3.820 18 H 0.045 0.955 19 N -0.747 5.747 20 C -0.326 4.326 21 H 0.065 0.935 22 C -0.107 4.107 23 N -0.977 5.977 24 Si 1.125 2.875 25 H -0.294 1.294 26 H -0.281 1.281 27 H -0.275 1.275 28 C -0.096 4.096 29 H 0.070 0.930 30 C 0.121 3.879 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.050 0.950 51 H 0.052 0.948 52 H 0.358 0.642 53 H 0.243 0.757 54 H 0.042 0.958 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.830 17.378 -13.416 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 C -0.175 4.175 4 C -0.095 4.095 5 C -0.173 4.173 6 C -0.173 4.173 7 C -0.157 4.157 8 C -0.167 4.167 9 C 0.352 3.648 10 O -0.465 6.465 11 N -0.341 5.341 12 C -0.012 4.012 13 C -0.110 4.110 14 H 0.120 0.880 15 C -0.138 4.138 16 C -0.177 4.177 17 C 0.072 3.928 18 H 0.063 0.937 19 N -0.388 5.388 20 C -0.457 4.457 21 H 0.083 0.917 22 C -0.298 4.298 23 N -0.626 5.626 24 Si 0.950 3.050 25 H -0.220 1.220 26 H -0.207 1.207 27 H -0.201 1.201 28 C -0.117 4.117 29 H 0.088 0.912 30 C -0.002 4.002 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.190 0.810 53 H 0.053 0.947 54 H 0.061 0.939 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.926 15.718 -12.838 28.441 hybrid contribution -0.099 -0.016 -0.801 0.807 sum 19.828 15.702 -13.639 28.735 Atomic orbital electron populations 1.21546 0.92953 1.01778 1.02471 1.21933 0.94186 0.91951 1.00184 1.21551 1.01110 0.91534 1.03339 1.21886 0.99113 0.98534 0.89937 1.21499 0.93077 1.02381 1.00319 1.21408 0.98465 0.97716 0.99681 1.21710 0.99034 0.99954 0.94968 1.21412 0.92253 1.02163 1.00899 1.19940 0.78895 0.87142 0.78826 1.90669 1.63106 1.26706 1.66014 1.48591 1.45128 1.21431 1.18909 1.22522 0.97312 0.87008 0.94329 1.22610 0.95295 0.95986 0.97072 0.87993 1.22450 0.98289 1.01113 0.91983 1.23093 0.98689 0.97045 0.98903 1.21409 0.86935 0.92564 0.91935 0.93725 1.42651 1.08801 1.52129 1.35215 1.20352 0.98154 1.19681 1.07526 0.91688 1.27147 0.91916 1.04394 1.06322 1.70991 1.32486 1.38942 1.20151 0.82659 0.75482 0.74143 0.72699 1.22011 1.20715 1.20108 1.22993 0.97783 0.95474 0.95421 0.91186 1.22119 0.90764 0.93496 0.93852 0.92163 0.90066 0.94165 0.89965 0.90852 0.90677 0.92352 0.90999 0.89352 0.93735 0.91234 0.93609 0.93047 0.88475 0.90614 0.87852 0.89649 0.89054 0.90034 0.93157 0.92963 0.81036 0.94660 0.93907 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.70 71.98 0.63 -1.87 16 2 C -0.08 -1.31 2.47 -52.16 -0.13 -1.43 16 3 C -0.12 -1.05 8.63 71.98 0.62 -0.43 16 4 C -0.09 -1.77 2.70 -52.16 -0.14 -1.91 16 5 C -0.12 -1.44 8.62 71.98 0.62 -0.82 16 6 C -0.12 -2.79 7.94 71.98 0.57 -2.22 16 7 C -0.15 -3.07 1.56 -52.93 -0.08 -3.16 16 8 C -0.11 -1.55 8.55 71.98 0.62 -0.93 16 9 C 0.56 16.53 5.69 87.66 0.50 17.03 16 10 O -0.58 -22.66 14.50 -3.03 -0.04 -22.70 16 11 N -0.61 -16.66 3.32 -811.98 -2.70 -19.36 16 12 C 0.11 2.09 5.12 86.50 0.44 2.54 16 13 C -0.09 -1.99 3.86 -9.37 -0.04 -2.02 16 14 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 15 C -0.10 -2.13 6.34 31.75 0.20 -1.92 16 16 C -0.14 -4.45 6.60 32.00 0.21 -4.24 16 17 C 0.18 7.01 3.04 46.14 0.14 7.15 16 18 H 0.04 1.84 7.19 -2.38 -0.02 1.82 16 19 N -0.75 -37.96 5.22 -317.50 -1.66 -39.62 16 20 C -0.33 -18.53 9.97 84.03 0.84 -17.69 16 21 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 22 C -0.11 -6.33 5.50 84.86 0.47 -5.86 16 23 N -0.98 -62.54 13.70 21.65 0.30 -62.24 16 24 Si 1.13 53.12 29.92 68.60 2.05 55.17 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 C -0.10 -3.11 3.70 -8.81 -0.03 -3.14 16 29 H 0.07 2.50 7.79 -2.39 -0.02 2.48 16 30 C 0.12 4.11 6.56 87.06 0.57 4.69 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.00 5.01 -2.39 -0.01 0.99 16 34 H 0.08 0.51 4.41 -2.39 -0.01 0.50 16 35 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 39 H 0.09 0.70 4.41 -2.38 -0.01 0.69 16 40 H 0.04 1.24 4.85 -2.39 -0.01 1.23 16 41 H 0.07 1.35 8.12 -2.38 -0.02 1.33 16 42 H 0.04 1.33 7.18 -2.39 -0.02 1.32 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 44 H 0.10 0.85 5.19 -2.39 -0.01 0.83 16 45 H 0.08 0.89 6.31 -2.39 -0.02 0.88 16 46 H 0.10 1.45 6.84 -2.38 -0.02 1.43 16 47 H 0.09 1.41 7.02 -2.39 -0.02 1.39 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.52 7.20 -2.39 -0.02 1.51 16 50 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 52 H 0.36 19.20 6.42 -92.72 -0.60 18.60 16 53 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 54 H 0.04 1.70 7.97 -2.39 -0.02 1.68 16 55 H 0.06 2.10 7.21 -2.39 -0.02 2.08 16 Total: -1.00 -75.97 400.80 4.39 -71.58 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.43 Total: 33.42 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 6.00 Total: -16.26 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -4.06 Total: -121.22 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.70 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.05 Total: 55.17 kcal Total: -75.97 4.39 -71.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026432385.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.093 kcal (2) G-P(sol) polarization free energy of solvation -75.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds