Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 115.56198 * 2 1 4 4 C 1.52999 * 117.49855 * 214.31680 * 2 1 3 5 5 C 1.52998 * 117.50347 * 145.02034 * 4 2 1 6 6 C 1.53009 * 117.49979 * 359.97438 * 4 2 1 7 7 C 1.52999 * 117.49829 * 145.69269 * 2 1 3 8 8 C 1.53000 * 117.51770 * 214.96747 * 7 2 1 9 9 C 1.50694 * 117.50188 * 359.97438 * 7 2 1 10 10 O 1.21285 * 120.00203 * 77.89745 * 9 7 2 11 11 N 1.34778 * 120.00343 * 257.90399 * 9 7 2 12 12 C 1.48922 * 125.45517 * 185.09185 * 11 9 7 13 13 C 1.55407 * 106.06489 * 178.82730 * 12 11 9 14 14 H 1.09003 * 112.44761 * 145.55453 * 13 12 11 15 15 C 1.53086 * 106.23579 * 268.59279 * 13 12 11 16 16 C 1.52740 * 110.93435 * 164.37775 * 15 13 12 17 17 N 1.47236 * 107.70673 * 302.04601 * 16 15 13 18 18 C 1.36942 * 121.38906 * 238.34134 * 17 16 15 19 19 H 1.08001 * 120.00395 * 27.61957 * 18 17 16 20 20 C 1.38813 * 119.99664 * 207.62117 * 18 17 16 21 21 N 1.31618 * 120.00309 * 15.88238 * 20 18 17 22 22 Si 1.86798 * 119.99945 * 195.88861 * 20 18 17 23 23 H 1.48493 * 109.47216 * 269.99733 * 22 20 18 24 24 H 1.48508 * 109.47241 * 29.99853 * 22 20 18 25 25 H 1.48504 * 109.47204 * 149.99727 * 22 20 18 26 26 C 1.46704 * 117.21763 * 58.60538 * 17 16 15 27 27 C 1.50086 * 111.16137 * 308.00991 * 26 17 16 28 28 H 1.08995 * 108.95486 * 167.23189 * 27 26 17 29 29 C 1.47852 * 125.64603 * 5.11048 * 11 9 7 30 30 H 1.08999 * 109.47086 * 279.69991 * 1 2 3 31 31 H 1.09005 * 109.47351 * 39.69826 * 1 2 3 32 32 H 1.09002 * 109.47385 * 159.69821 * 1 2 3 33 33 H 1.08994 * 109.47159 * 211.94458 * 3 2 1 34 34 H 1.09000 * 109.47220 * 331.94798 * 3 2 1 35 35 H 1.09003 * 109.46650 * 91.94554 * 3 2 1 36 36 H 1.09000 * 109.47584 * 137.20516 * 5 4 2 37 37 H 1.09005 * 109.47281 * 257.21197 * 5 4 2 38 38 H 1.09008 * 109.46744 * 17.20872 * 5 4 2 39 39 H 1.09003 * 109.46774 * 342.98148 * 6 4 2 40 40 H 1.08995 * 109.46618 * 102.98034 * 6 4 2 41 41 H 1.08993 * 109.47008 * 222.98060 * 6 4 2 42 42 H 1.09000 * 109.47295 * 202.65115 * 8 7 2 43 43 H 1.08997 * 109.47030 * 322.65572 * 8 7 2 44 44 H 1.09004 * 109.46883 * 82.65056 * 8 7 2 45 45 H 1.08997 * 110.53512 * 59.65949 * 12 11 9 46 46 H 1.08999 * 110.24496 * 297.84228 * 12 11 9 47 47 H 1.09002 * 109.18372 * 43.99831 * 15 13 12 48 48 H 1.09002 * 109.18414 * 284.74938 * 15 13 12 49 49 H 1.08994 * 109.81466 * 182.49736 * 16 15 13 50 50 H 1.08997 * 109.81494 * 61.59180 * 16 15 13 51 51 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 52 52 H 1.09001 * 109.11698 * 68.03871 * 26 17 16 53 53 H 1.08997 * 109.12209 * 187.12403 * 26 17 16 54 54 H 1.09000 * 110.52740 * 38.02642 * 29 11 9 55 55 H 1.09000 * 110.52487 * 275.27847 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 3.5489 -0.7759 -1.4716 6 6 1.3587 -2.1564 -1.4712 7 6 2.2364 -1.1210 0.7649 8 6 3.5491 -0.7766 1.4713 9 6 1.3720 -2.1404 1.4612 10 8 0.8434 -3.0252 0.8220 11 7 1.1863 -2.0687 2.7942 12 6 0.4493 -3.0662 3.6185 13 6 0.5360 -2.5602 5.0853 14 1 -0.3638 -2.7864 5.6575 15 6 1.7830 -3.2107 5.6896 16 6 2.1934 -2.5078 6.9820 17 7 2.4301 -1.0896 6.6648 18 6 3.6412 -0.4974 6.9053 19 1 4.5432 -1.0913 6.9007 20 6 3.7095 0.8664 7.1550 21 7 2.6193 1.5331 7.4702 22 14 5.3485 1.7554 7.0435 23 1 6.0160 1.7311 8.3697 24 1 6.2117 1.0786 6.0423 25 1 5.1209 3.1633 6.6295 26 6 1.3124 -0.3360 6.0859 27 6 0.7403 -1.0457 4.8936 28 1 -0.2129 -0.5864 4.6319 29 6 1.6792 -0.9892 3.6760 30 1 -0.3633 0.1731 1.0130 31 1 -0.3634 0.7907 -0.6564 32 1 -0.3634 -0.9638 -0.3566 33 1 3.1335 1.3318 -0.5437 34 1 1.5287 2.0994 -0.4833 35 1 2.3783 1.6929 1.0271 36 1 4.2714 -1.5752 -1.3066 37 1 3.3678 -0.6647 -2.5407 38 1 3.9426 0.1582 -1.0707 39 1 0.3455 -2.1064 -1.0724 40 1 1.3391 -1.9472 -2.5407 41 1 1.7664 -3.1532 -1.3034 42 1 4.1319 -1.6858 1.6187 43 1 4.1175 -0.0757 0.8601 44 1 3.3330 -0.3227 2.4386 45 1 0.9139 -4.0487 3.5357 46 1 -0.5930 -3.1193 3.3040 47 1 2.6020 -3.1495 4.9728 48 1 1.5726 -4.2587 5.9031 49 1 3.1068 -2.9563 7.3726 50 1 1.3947 -2.5931 7.7187 51 1 2.6671 2.4861 7.6450 52 1 0.5306 -0.2236 6.8370 53 1 1.6642 0.6516 5.7875 54 1 1.6010 -0.0229 3.1777 55 1 2.7086 -1.1824 3.9779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088223000.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = 4.448482 kcal Electronic energy + Delta-G solvation = -32199.634132 eV Core-core repulsion = 28430.465398 eV Total energy + Delta-G solvation = -3769.168733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.13650 -40.66446 -38.67578 -36.81259 -34.43609 -32.60628 -32.33510 -32.01353 -31.28418 -29.91807 -28.72204 -27.48625 -26.96935 -26.55336 -25.36665 -23.43275 -23.13901 -21.72834 -20.06105 -19.39994 -18.85116 -18.53613 -17.37921 -17.16986 -16.71518 -16.49436 -16.05948 -15.73474 -15.35696 -15.25808 -15.10751 -14.86011 -14.68764 -14.42045 -14.23190 -13.99012 -13.77348 -13.65926 -13.60179 -13.36870 -13.26912 -12.99952 -12.85287 -12.84876 -12.76601 -12.71851 -12.63854 -12.63670 -12.48078 -12.44074 -12.21402 -12.02242 -11.88957 -11.65494 -11.38516 -11.02621 -11.02193 -10.77598 -10.50860 -10.41689 -10.14355 -9.61447 -8.61431 -7.82783 -5.26711 1.48623 1.51534 1.51956 1.59532 1.95962 2.54549 2.64757 3.29621 3.39012 3.51655 3.63170 3.64755 3.70034 3.75496 3.91694 3.96600 4.10922 4.17907 4.27033 4.40188 4.43509 4.52086 4.60150 4.61665 4.66213 4.69499 4.71930 4.76333 4.76781 4.83949 4.84939 4.87470 4.92197 4.98471 5.01483 5.02542 5.08870 5.09311 5.11002 5.13614 5.16678 5.18315 5.22496 5.30498 5.31420 5.34947 5.41788 5.45056 5.59105 5.68186 5.70355 5.78064 6.43076 6.55516 7.18342 7.20128 7.90022 8.45254 9.23703 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004450 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.562379 B = 6290.227334 C = 7587.367179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.164 4.164 8 C -0.119 4.119 9 C 0.562 3.438 10 O -0.572 6.572 11 N -0.614 5.614 12 C 0.116 3.884 13 C -0.079 4.079 14 H 0.106 0.894 15 C -0.115 4.115 16 C 0.138 3.862 17 N -0.604 5.604 18 C -0.253 4.253 19 H 0.063 0.937 20 C -0.041 4.041 21 N -0.932 5.932 22 Si 0.955 3.045 23 H -0.289 1.289 24 H -0.271 1.271 25 H -0.292 1.292 26 C 0.192 3.808 27 C -0.109 4.109 28 H 0.073 0.927 29 C 0.133 3.867 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.023 0.977 51 H 0.249 0.751 52 H -0.003 1.003 53 H 0.062 0.938 54 H 0.070 0.930 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -3.550 -15.745 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.180 4.180 4 C -0.082 4.082 5 C -0.177 4.177 6 C -0.161 4.161 7 C -0.167 4.167 8 C -0.176 4.176 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.347 5.347 12 C -0.005 4.005 13 C -0.097 4.097 14 H 0.124 0.876 15 C -0.154 4.154 16 C 0.013 3.987 17 N -0.327 5.327 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.237 4.237 21 N -0.578 5.578 22 Si 0.784 3.216 23 H -0.217 1.217 24 H -0.196 1.196 25 H -0.218 1.218 26 C 0.065 3.935 27 C -0.129 4.129 28 H 0.092 0.908 29 C 0.011 3.989 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.058 0.942 52 H 0.015 0.985 53 H 0.080 0.920 54 H 0.088 0.912 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.795 -3.866 -16.113 16.804 hybrid contribution 0.679 0.489 0.757 1.128 sum -2.117 -3.377 -15.355 15.864 Atomic orbital electron populations 1.21545 0.92233 1.02913 1.01662 1.21848 0.94773 0.91358 1.00831 1.21578 1.01471 0.92570 1.02428 1.21887 0.98779 0.98337 0.89174 1.21529 0.93522 1.02119 1.00538 1.21380 0.99080 0.96732 0.98913 1.21740 0.98636 1.00949 0.95338 1.21515 0.93566 1.01733 1.00756 1.19601 0.80016 0.84949 0.80232 1.90627 1.51719 1.38177 1.64738 1.49105 1.54353 1.25088 1.06144 1.22607 0.96330 0.91709 0.89893 1.22130 0.99450 0.94130 0.94020 0.87565 1.21885 0.96568 0.99142 0.97802 1.21031 0.98182 0.84935 0.94562 1.44222 1.10474 1.06842 1.71177 1.19363 0.85554 0.91925 1.41446 0.91939 1.25622 0.99378 0.98708 1.00006 1.70142 1.28570 1.07949 1.51164 0.85464 0.80569 0.77804 0.77765 1.21651 1.19576 1.21825 1.19660 0.88339 0.95034 0.90429 1.21860 0.98504 0.96586 0.95970 0.90833 1.22134 0.98077 0.89445 0.89256 0.93536 0.89923 0.92177 0.89914 0.90561 0.92550 0.92174 0.90349 0.90350 0.92242 0.91552 0.93615 0.93077 0.89556 0.91866 0.91377 0.91407 0.93616 0.90272 0.92942 0.95939 0.94153 0.98503 0.91969 0.91210 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.67 71.98 0.62 -2.33 16 2 C -0.09 -2.01 2.70 -52.18 -0.14 -2.15 16 3 C -0.12 -2.34 8.52 71.98 0.61 -1.73 16 4 C -0.08 -1.87 2.70 -52.18 -0.14 -2.01 16 5 C -0.12 -2.12 8.52 71.98 0.61 -1.51 16 6 C -0.10 -2.58 7.82 71.99 0.56 -2.01 16 7 C -0.16 -4.43 2.07 -52.93 -0.11 -4.54 16 8 C -0.12 -3.12 8.01 71.98 0.58 -2.55 16 9 C 0.56 18.20 6.24 87.65 0.55 18.75 16 10 O -0.57 -20.82 13.43 -3.05 -0.04 -20.86 16 11 N -0.61 -19.49 3.38 -805.72 -2.72 -22.21 16 12 C 0.12 3.39 6.31 86.74 0.55 3.94 16 13 C -0.08 -2.33 3.58 -9.59 -0.03 -2.37 16 14 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 15 C -0.11 -3.62 4.78 30.54 0.15 -3.47 16 16 C 0.14 5.35 6.52 86.15 0.56 5.91 16 17 N -0.60 -28.18 2.83 -705.56 -2.00 -30.18 16 18 C -0.25 -13.12 9.68 84.03 0.81 -12.30 16 19 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 20 C -0.04 -2.20 4.97 84.86 0.42 -1.77 16 21 N -0.93 -52.32 11.13 21.65 0.24 -52.08 16 22 Si 0.96 42.86 29.58 68.60 2.03 44.89 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.19 8.51 4.66 85.40 0.40 8.91 16 27 C -0.11 -3.76 2.82 -11.10 -0.03 -3.79 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 C 0.13 4.47 3.85 86.41 0.33 4.80 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.55 7.97 -2.38 -0.02 1.53 16 32 H 0.06 1.56 4.94 -2.39 -0.01 1.55 16 33 H 0.08 1.32 4.90 -2.39 -0.01 1.31 16 34 H 0.08 1.23 7.91 -2.39 -0.02 1.21 16 35 H 0.06 1.19 7.98 -2.39 -0.02 1.17 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.22 4.26 -2.38 -0.01 1.21 16 39 H 0.06 1.65 4.10 -2.39 -0.01 1.64 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.28 7.56 -2.39 -0.02 1.26 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.86 5.50 -2.39 -0.01 1.85 16 44 H 0.06 1.86 4.67 -2.38 -0.01 1.85 16 45 H 0.07 1.97 7.74 -2.39 -0.02 1.95 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.05 1.58 7.10 -2.39 -0.02 1.57 16 48 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.05 2.02 7.96 -2.39 -0.02 2.00 16 50 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 52 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 53 H 0.06 3.14 6.03 -2.39 -0.01 3.13 16 54 H 0.07 2.31 7.16 -2.39 -0.02 2.29 16 55 H 0.06 2.46 6.60 -2.39 -0.02 2.44 16 Total: -1.00 -61.22 392.22 4.68 -56.53 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.87 Total: 24.13 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.30 Total: -0.23 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.47 Total: -104.47 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.22 4.68 -56.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088223000.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.983 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds