Wall clock time and date at job start Tue Mar 31 2020 18:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.64498 * 2 1 4 4 C 1.54324 * 110.72145 * 236.65876 * 2 1 3 5 5 N 1.47025 * 107.27257 * 219.44376 * 4 2 1 6 6 C 1.36937 * 125.64700 * 178.97290 * 5 4 2 7 7 H 1.08003 * 120.00102 * 179.97438 * 6 5 4 8 8 C 1.38814 * 119.99959 * 359.97438 * 6 5 4 9 9 N 1.31618 * 120.00200 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99866 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47056 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46995 * 119.99896 * 10 8 6 13 13 H 1.48498 * 109.47060 * 239.99616 * 10 8 6 14 14 C 1.47467 * 108.72326 * 358.97780 * 5 4 2 15 15 C 1.54909 * 104.81041 * 24.06646 * 14 5 4 16 16 H 1.09004 * 111.00282 * 81.13962 * 15 14 5 17 17 C 1.52997 * 111.00480 * 204.94641 * 15 14 5 18 18 N 1.46499 * 109.47555 * 290.42372 * 17 15 14 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 15 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.54893 * 129.08799 * 299.65632 * 21 19 18 23 23 C 1.57163 * 77.91494 * 180.16586 * 22 21 19 24 24 C 1.53003 * 129.25033 * 179.19490 * 23 22 21 25 25 C 1.52996 * 109.46944 * 301.28799 * 24 23 22 26 26 C 1.53000 * 109.47125 * 61.28848 * 24 23 22 27 27 C 1.53004 * 109.47065 * 181.28534 * 24 23 22 28 28 C 1.54410 * 129.01115 * 179.72317 * 21 19 18 29 29 C 1.54881 * 129.09020 * 59.78198 * 21 19 18 30 30 H 1.08996 * 109.47041 * 296.86342 * 1 2 3 31 31 H 1.09002 * 109.46767 * 56.85745 * 1 2 3 32 32 H 1.08999 * 109.47365 * 176.86100 * 1 2 3 33 33 H 1.08993 * 109.88190 * 338.86472 * 4 2 1 34 34 H 1.09000 * 109.87866 * 99.87340 * 4 2 1 35 35 H 0.96996 * 120.00320 * 179.97438 * 9 8 6 36 36 H 1.09001 * 110.34555 * 265.25053 * 14 5 4 37 37 H 1.08998 * 110.40525 * 142.91237 * 14 5 4 38 38 H 1.08998 * 109.47382 * 170.41933 * 17 15 14 39 39 H 1.09002 * 109.47216 * 50.42370 * 17 15 14 40 40 H 0.97000 * 119.99484 * 359.97438 * 18 17 15 41 41 H 1.08990 * 114.97952 * 291.96593 * 22 21 19 42 42 H 1.09006 * 114.97233 * 67.13264 * 22 21 19 43 43 H 1.08991 * 109.47376 * 60.00173 * 25 24 23 44 44 H 1.09006 * 109.46839 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47233 * 299.99802 * 25 24 23 46 46 H 1.09007 * 109.47224 * 60.00029 * 26 24 23 47 47 H 1.08993 * 109.47307 * 180.02562 * 26 24 23 48 48 H 1.08996 * 109.47083 * 300.00239 * 26 24 23 49 49 H 1.09001 * 109.47041 * 60.00242 * 27 24 23 50 50 H 1.09002 * 109.47010 * 179.97438 * 27 24 23 51 51 H 1.08998 * 109.47082 * 300.00030 * 27 24 23 52 52 H 1.09001 * 114.93321 * 293.12519 * 28 21 19 53 53 H 1.08998 * 114.93576 * 68.09485 * 28 21 19 54 54 H 1.09001 * 114.98050 * 292.87223 * 29 21 19 55 55 H 1.09004 * 114.97933 * 68.04276 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2445 -1.5521 -0.7362 6 6 4.0042 -2.3997 -1.4975 7 1 4.8467 -2.9124 -1.0573 8 6 3.6915 -2.5999 -2.8351 9 7 2.6645 -1.9755 -3.3715 10 14 4.7284 -3.7556 -3.8737 11 1 5.8162 -4.3282 -3.0409 12 1 3.8744 -4.8525 -4.3959 13 1 5.3189 -3.0043 -5.0104 14 6 3.4632 -1.2495 0.6904 15 6 2.0789 -0.7933 1.2152 16 1 1.4447 -1.6507 1.4408 17 6 2.2277 0.1121 2.4394 18 7 2.7058 -0.6783 3.5764 19 6 2.9110 -0.0867 4.7698 20 8 2.7002 1.1003 4.9024 21 6 3.4087 -0.8987 5.9378 22 6 2.7542 -2.1220 6.6264 23 6 4.0726 -1.9402 7.4623 24 6 4.5775 -2.7457 8.6612 25 6 3.5462 -2.6812 9.7896 26 6 4.7874 -4.2029 8.2448 27 6 5.9038 -2.1583 9.1481 28 6 3.7173 -0.4398 7.3794 29 6 4.7207 -1.7104 6.0744 30 1 -0.3633 0.4644 0.9167 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3130 -1.4785 -1.5749 34 1 2.3715 -0.1060 -1.9985 35 1 2.4462 -2.1151 -4.3062 36 1 4.1935 -0.4478 0.8002 37 1 3.7951 -2.1416 1.2215 38 1 1.2617 0.5536 2.6844 39 1 2.9440 0.9041 2.2207 40 1 2.8741 -1.6278 3.4704 41 1 1.8358 -1.9061 7.1722 42 1 2.7015 -3.0217 6.0132 43 1 2.6015 -3.0996 9.4427 44 1 3.9058 -3.2554 10.6436 45 1 3.3967 -1.6430 10.0863 46 1 5.5221 -4.2488 7.4408 47 1 5.1466 -4.7767 9.0989 48 1 3.8426 -4.6213 7.8978 49 1 5.7542 -1.1202 9.4449 50 1 6.2632 -2.7319 10.0025 51 1 6.6384 -2.2043 8.3442 52 1 4.5649 0.2390 7.4741 53 1 2.8466 -0.1399 7.9626 54 1 4.7908 -2.5844 5.4268 55 1 5.6311 -1.1118 6.1071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093239763.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:48 Heat of formation + Delta-G solvation = 43.069689 kcal Electronic energy + Delta-G solvation = -29584.574226 eV Core-core repulsion = 25817.080234 eV Total energy + Delta-G solvation = -3767.493992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.15285 -40.46180 -39.40293 -36.78742 -36.06402 -34.66631 -32.55134 -30.96207 -28.28828 -28.27350 -28.00022 -27.17925 -26.39451 -26.32551 -25.85533 -24.27508 -22.62092 -21.59940 -21.17612 -20.11095 -18.82045 -18.54697 -17.76378 -17.27326 -16.77151 -16.39863 -15.99570 -15.64285 -15.31675 -15.26182 -15.19515 -14.93743 -14.89929 -14.64196 -14.45750 -14.20754 -14.08835 -13.46738 -13.31776 -13.14067 -13.12622 -13.08932 -12.86370 -12.69540 -12.49966 -12.42716 -12.28977 -12.19128 -12.07981 -11.95766 -11.88769 -11.83127 -11.72107 -11.69732 -11.57536 -11.40224 -11.33863 -11.00742 -10.93337 -10.72656 -10.66193 -10.12545 -8.89666 -7.84719 -5.20371 1.44035 1.45634 1.46577 1.56791 2.08755 2.49090 3.20475 3.26343 3.33303 3.33397 3.52788 3.58827 3.59899 3.63012 3.79735 3.92365 3.94388 4.05594 4.26306 4.27784 4.36093 4.48368 4.54164 4.58912 4.65587 4.67515 4.72753 4.78924 4.81655 4.83929 4.85865 4.87160 4.95705 4.97070 4.97354 4.99144 5.03486 5.07936 5.14424 5.14933 5.15149 5.23095 5.28305 5.33313 5.36667 5.46255 5.47626 5.52176 5.55475 5.56825 5.71167 5.81542 6.20259 6.51154 7.10608 7.18088 7.78051 8.42690 9.25730 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002439 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.685756 B =11478.158613 C =12893.637875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.239 4.239 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.264 1.264 12 H -0.291 1.291 13 H -0.295 1.295 14 C 0.139 3.861 15 C -0.089 4.089 16 H 0.090 0.910 17 C 0.144 3.856 18 N -0.709 5.709 19 C 0.570 3.430 20 O -0.582 6.582 21 C -0.183 4.183 22 C -0.092 4.092 23 C -0.083 4.083 24 C -0.005 4.005 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.093 4.093 29 C -0.094 4.094 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.017 0.983 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.016 0.984 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.053 0.947 52 H 0.068 0.932 53 H 0.074 0.926 54 H 0.091 0.909 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -2.732 27.206 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.188 1.188 12 H -0.218 1.218 13 H -0.222 1.222 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.108 0.892 17 C 0.020 3.980 18 N -0.359 5.359 19 C 0.357 3.643 20 O -0.463 6.463 21 C -0.187 4.187 22 C -0.129 4.129 23 C -0.083 4.083 24 C -0.005 4.005 25 C -0.197 4.197 26 C -0.197 4.197 27 C -0.198 4.198 28 C -0.131 4.131 29 C -0.132 4.132 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.249 0.751 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.092 0.908 54 H 0.109 0.891 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.643 -1.969 27.074 27.153 hybrid contribution 0.512 -0.471 -1.587 1.732 sum 1.155 -2.440 25.488 25.630 Atomic orbital electron populations 1.21639 0.92948 1.01714 1.02177 1.22321 0.97038 0.98531 0.94267 0.90852 1.20971 0.88137 0.91946 0.92226 1.44816 1.32660 1.51180 1.06873 1.19498 1.07794 1.17590 0.91968 0.89879 1.25662 0.99872 1.02324 0.98271 1.70197 1.30375 1.47122 1.12367 0.85019 0.78001 0.77919 0.78464 1.18823 1.21840 1.22222 1.21746 0.95002 0.97449 0.84456 1.22461 0.97109 0.98283 0.93033 0.89175 1.21182 0.99712 0.93296 0.83792 1.45868 1.66944 1.13663 1.09431 1.19135 0.76009 0.86316 0.82823 1.90673 1.53649 1.17310 1.84632 1.23818 1.01553 0.98793 0.94487 1.24553 0.97235 0.94811 0.96302 1.24271 0.95479 0.94584 0.93994 1.19591 0.95521 0.94240 0.91120 1.21826 0.98405 1.02003 0.97457 1.21831 1.02049 0.94081 1.01776 1.21838 0.95763 1.00883 1.01348 1.23818 1.00837 0.96603 0.91803 1.24112 0.94172 0.98451 0.96437 0.90638 0.92725 0.93210 0.96467 0.98285 0.94484 0.96650 0.93275 0.90662 0.92488 0.75135 0.90321 0.88998 0.92407 0.91329 0.92850 0.92639 0.91453 0.92320 0.92877 0.91274 0.92751 0.91345 0.90780 0.89094 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.16 71.98 0.66 -3.12 16 2 C -0.10 -3.63 3.02 -9.61 -0.03 -3.66 16 3 H 0.07 2.55 8.04 -2.39 -0.02 2.53 16 4 C 0.19 9.47 4.97 86.73 0.43 9.90 16 5 N -0.63 -32.10 3.40 -691.88 -2.35 -34.45 16 6 C -0.24 -13.36 10.28 84.03 0.86 -12.50 16 7 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -57.59 10.31 21.65 0.22 -57.37 16 10 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 14 C 0.14 5.41 6.56 86.85 0.57 5.98 16 15 C -0.09 -2.81 2.51 -9.40 -0.02 -2.83 16 16 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16 17 C 0.14 3.97 5.12 86.38 0.44 4.42 16 18 N -0.71 -17.33 5.45 -463.06 -2.52 -19.85 16 19 C 0.57 15.46 7.94 87.66 0.70 16.15 16 20 O -0.58 -20.60 17.10 -3.04 -0.05 -20.65 16 21 C -0.18 -3.70 3.36 -63.69 -0.21 -3.91 16 22 C -0.09 -1.37 7.95 31.90 0.25 -1.11 16 23 C -0.08 -1.15 1.67 -62.12 -0.10 -1.25 16 24 C 0.00 -0.05 1.02 -52.18 -0.05 -0.10 16 25 C -0.14 -1.35 8.47 71.98 0.61 -0.74 16 26 C -0.14 -1.36 8.47 71.98 0.61 -0.75 16 27 C -0.14 -1.48 8.47 71.98 0.61 -0.87 16 28 C -0.09 -1.70 7.78 30.61 0.24 -1.46 16 29 C -0.09 -1.54 7.84 31.08 0.24 -1.29 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.02 0.94 7.00 -2.39 -0.02 0.92 16 34 H 0.00 -0.06 7.51 -2.39 -0.02 -0.08 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.02 0.63 7.96 -2.39 -0.02 0.61 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.74 8.04 -2.39 -0.02 1.72 16 40 H 0.41 8.44 8.43 -92.71 -0.78 7.66 16 41 H 0.08 1.16 7.91 -2.39 -0.02 1.14 16 42 H 0.09 1.17 7.97 -2.38 -0.02 1.15 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 53 H 0.07 1.36 7.91 -2.39 -0.02 1.34 16 54 H 0.09 1.31 7.97 -2.39 -0.02 1.29 16 55 H 0.07 1.23 7.93 -2.38 -0.02 1.21 16 Total: -1.00 -70.50 429.90 3.64 -66.86 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.05 Total: 18.28 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 6.27 Total: -0.61 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.65 Total: -111.66 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.50 3.64 -66.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093239763.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.930 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds