Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46813 * 2 1 4 4 C 1.53005 * 109.46889 * 240.00742 * 2 1 3 5 5 C 1.47196 * 109.47499 * 120.00636 * 2 1 3 6 6 C 2.64599 * 109.47287 * 120.00522 * 2 1 3 7 7 C 4.07798 * 109.47358 * 120.00506 * 2 1 3 8 8 O 1.21611 * 120.00101 * 191.23852 * 7 6 5 9 9 N 1.34777 * 119.99966 * 11.24128 * 7 6 5 10 10 C 1.46928 * 120.63052 * 179.97438 * 9 7 6 11 11 C 1.53187 * 108.77623 * 126.36901 * 10 9 7 12 12 C 1.53036 * 109.33909 * 54.61900 * 11 10 9 13 13 C 1.52999 * 109.46209 * 178.63045 * 12 11 10 14 14 C 1.53002 * 109.47318 * 300.00091 * 13 12 11 15 15 C 1.52998 * 109.47115 * 60.00005 * 13 12 11 16 16 C 1.53004 * 109.47286 * 180.02562 * 13 12 11 17 17 N 1.46500 * 109.47117 * 180.02562 * 16 13 12 18 18 C 1.36934 * 119.99902 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00069 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99734 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99657 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00156 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46736 * 90.00154 * 22 20 18 24 24 H 1.48500 * 109.47192 * 210.00100 * 22 20 18 25 25 H 1.48495 * 109.46924 * 330.00344 * 22 20 18 26 26 C 1.53042 * 109.54058 * 298.68652 * 12 11 10 27 27 C 1.46927 * 120.63332 * 359.97438 * 9 7 6 28 28 H 1.09002 * 109.47221 * 299.99035 * 1 2 3 29 29 H 1.08997 * 109.47545 * 59.99961 * 1 2 3 30 30 H 1.09010 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46894 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47618 * 300.00366 * 3 2 1 33 33 H 1.08999 * 109.47088 * 60.00838 * 3 2 1 34 34 H 1.09010 * 109.46619 * 299.99517 * 4 2 1 35 35 H 1.08997 * 109.47601 * 59.99331 * 4 2 1 36 36 H 1.08993 * 109.46867 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.58414 * 6.58067 * 10 9 7 38 38 H 1.09005 * 109.70435 * 246.23171 * 10 9 7 39 39 H 1.09002 * 109.49796 * 174.58834 * 11 10 9 40 40 H 1.09000 * 109.49812 * 294.65558 * 11 10 9 41 41 H 1.08998 * 109.46343 * 58.67009 * 12 11 10 42 42 H 1.08997 * 109.47107 * 59.99380 * 14 13 12 43 43 H 1.08995 * 109.47551 * 180.02562 * 14 13 12 44 44 H 1.09004 * 109.46591 * 299.99928 * 14 13 12 45 45 H 1.09006 * 109.47117 * 60.00276 * 15 13 12 46 46 H 1.08999 * 109.47364 * 180.02562 * 15 13 12 47 47 H 1.09001 * 109.47136 * 300.00085 * 15 13 12 48 48 H 1.09006 * 109.47043 * 299.99783 * 16 13 12 49 49 H 1.08994 * 109.47433 * 59.99682 * 16 13 12 50 50 H 0.97004 * 120.00088 * 359.97438 * 17 16 13 51 51 H 0.97006 * 119.99742 * 180.02562 * 21 20 18 52 52 H 1.09003 * 109.46473 * 301.36154 * 26 12 11 53 53 H 1.09000 * 109.52301 * 181.30261 * 26 12 11 54 54 H 1.08999 * 109.58621 * 353.42243 * 27 9 7 55 55 H 1.09005 * 109.58884 * 113.83819 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0208 -0.6940 1.2017 6 6 2.4121 -1.2475 2.1603 7 6 2.8895 -1.9226 3.3294 8 8 3.8389 -1.4761 3.9444 9 7 2.2867 -3.0530 3.7482 10 6 2.7654 -3.7573 4.9456 11 6 1.5876 -3.9557 5.9048 12 6 0.4498 -4.6677 5.1697 13 6 -0.7151 -4.8979 6.1346 14 6 -0.2443 -5.7628 7.3055 15 6 -1.2132 -3.5513 6.6632 16 6 -1.8526 -5.6103 5.4000 17 7 -2.9683 -5.8302 6.3238 18 6 -4.1057 -6.4552 5.8871 19 1 -4.1805 -6.7858 4.8617 20 6 -5.1626 -6.6640 6.7626 21 7 -6.2557 -7.2652 6.3430 22 14 -5.0329 -6.0929 8.5364 23 1 -5.5412 -4.7019 8.6470 24 1 -5.8418 -6.9860 9.4044 25 1 -3.6127 -6.1368 8.9679 26 6 -0.0214 -3.8044 3.9972 27 6 1.1384 -3.6045 3.0161 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0278 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7215 -1.2492 37 1 3.5384 -3.1638 5.4339 38 1 3.1738 -4.7275 4.6627 39 1 1.9074 -4.5606 6.7533 40 1 1.2403 -2.9855 6.2600 41 1 0.8046 -5.6273 4.7938 42 1 0.5663 -5.2558 7.8289 43 1 -1.0742 -5.9272 7.9927 44 1 0.1106 -6.7222 6.9288 45 1 -1.5487 -2.9351 5.8290 46 1 -2.0428 -3.7153 7.3509 47 1 -0.4027 -3.0442 7.1866 48 1 -2.1883 -4.9945 4.5656 49 1 -1.4976 -6.5697 5.0237 50 1 -2.9012 -5.5330 7.2447 51 1 -6.9944 -7.4108 6.9546 52 1 -0.3540 -2.8356 4.3700 53 1 -0.8472 -4.3012 3.4878 54 1 0.8378 -2.9104 2.2313 55 1 1.4127 -4.5624 2.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101538941.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -12.524012 kcal Electronic energy + Delta-G solvation = -29643.781199 eV Core-core repulsion = 25873.876484 eV Total energy + Delta-G solvation = -3769.904716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.53216 -40.00425 -38.48805 -37.52992 -35.61218 -33.78889 -33.11702 -32.16375 -31.62350 -28.22011 -28.20589 -28.20037 -27.76929 -26.92275 -25.13492 -23.79790 -23.69483 -22.13224 -20.93108 -20.05570 -19.31062 -18.65906 -17.61770 -16.74095 -16.73704 -16.53104 -16.08156 -15.65079 -15.39427 -15.33909 -15.29554 -15.19917 -15.09367 -14.66801 -14.46997 -14.28425 -14.02134 -13.52446 -13.34868 -13.33656 -13.25316 -13.17665 -12.93871 -12.77139 -12.73057 -12.68667 -12.62577 -12.39702 -12.26754 -12.24736 -12.17913 -11.96923 -11.84456 -11.77498 -11.58373 -11.32811 -11.31579 -11.26739 -11.00351 -10.99571 -10.84510 -9.78724 -9.23311 -8.01892 -5.32809 0.43539 1.19585 1.35300 1.38121 1.45451 1.87824 2.39496 2.47706 2.89323 3.29864 3.55315 3.68647 3.72695 3.89360 3.94225 3.94572 3.95980 4.10213 4.12382 4.22403 4.28461 4.33914 4.35918 4.45971 4.56831 4.72708 4.73974 4.74881 4.80961 4.82905 4.82951 4.88109 4.92185 4.95254 4.95761 4.97299 5.02151 5.03807 5.08129 5.13325 5.19362 5.19789 5.23378 5.30305 5.34375 5.35648 5.37725 5.44775 5.58590 5.65092 5.78323 6.14060 6.16939 6.23210 6.88042 7.10602 7.89178 8.07158 9.20063 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002564 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.020351 B =10917.949989 C =12227.979204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.044 4.044 6 C -0.263 4.263 7 C 0.630 3.370 8 O -0.573 6.573 9 N -0.592 5.592 10 C 0.112 3.888 11 C -0.124 4.124 12 C -0.064 4.064 13 C -0.059 4.059 14 C -0.139 4.139 15 C -0.139 4.139 16 C 0.163 3.837 17 N -0.755 5.755 18 C -0.227 4.227 19 H 0.057 0.943 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.948 3.052 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.253 1.253 26 C -0.132 4.132 27 C 0.111 3.889 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.028 0.972 49 H 0.021 0.979 50 H 0.365 0.635 51 H 0.257 0.743 52 H 0.063 0.937 53 H 0.082 0.918 54 H 0.086 0.914 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.881 14.455 -12.321 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 C -0.199 4.199 4 C -0.197 4.197 5 C -0.046 4.046 6 C -0.266 4.266 7 C 0.420 3.580 8 O -0.455 6.455 9 N -0.322 5.322 10 C -0.009 4.009 11 C -0.162 4.162 12 C -0.083 4.083 13 C -0.059 4.059 14 C -0.196 4.196 15 C -0.196 4.196 16 C 0.037 3.963 17 N -0.401 5.401 18 C -0.358 4.358 19 H 0.075 0.925 20 C -0.256 4.256 21 N -0.636 5.636 22 Si 0.775 3.225 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.177 1.177 26 C -0.170 4.170 27 C -0.011 4.011 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.200 0.800 51 H 0.065 0.935 52 H 0.082 0.918 53 H 0.101 0.899 54 H 0.105 0.895 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.257 14.542 -12.128 28.468 hybrid contribution -0.701 -0.075 1.275 1.457 sum 20.555 14.467 -10.853 27.379 Atomic orbital electron populations 1.21939 0.91069 1.03206 1.03687 1.18269 0.96805 0.94786 0.87055 1.21939 1.01484 0.92797 1.03699 1.21919 1.01469 1.00786 0.95482 1.23313 0.93918 0.94331 0.93082 1.20622 1.04721 1.03773 0.97506 1.14981 0.81727 0.80020 0.81318 1.90794 1.29615 1.67172 1.57950 1.48061 1.31942 1.23746 1.28476 1.21803 0.97170 0.97394 0.84555 1.22042 0.94334 1.01469 0.98324 1.21025 0.93729 0.99279 0.94277 1.20646 0.94245 0.95270 0.95783 1.21879 1.00705 0.99685 0.97363 1.21903 1.00525 0.96398 1.00777 1.20915 0.86694 0.96665 0.92043 1.42802 1.15185 1.71700 1.10437 1.19064 0.92345 1.28306 0.96076 0.92486 1.25448 0.96023 1.01882 1.02290 1.69878 1.06960 1.50225 1.36552 0.85517 0.78323 0.77706 0.80921 1.20568 1.22284 1.17735 1.22078 0.97558 1.00811 0.96518 1.21917 0.84608 1.00224 0.94318 0.92657 0.88863 0.91941 0.92436 0.88704 0.92683 0.91953 0.88797 0.92392 0.89818 0.89134 0.88499 0.91816 0.89790 0.90408 0.94779 0.92350 0.92656 0.94675 0.91095 0.95409 0.96128 0.80050 0.93457 0.91806 0.89947 0.89528 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.43 71.98 0.61 -0.82 16 2 C 0.03 0.37 0.95 -53.99 -0.05 0.32 16 3 C -0.14 -1.44 8.43 71.98 0.61 -0.83 16 4 C -0.14 -1.23 8.43 71.98 0.61 -0.62 16 5 C -0.04 -0.84 11.71 31.12 0.36 -0.48 16 6 C -0.26 -6.28 11.57 30.01 0.35 -5.93 16 7 C 0.63 16.84 7.55 85.49 0.65 17.49 16 8 O -0.57 -19.21 16.50 -4.06 -0.07 -19.27 16 9 N -0.59 -12.49 2.97 -827.80 -2.46 -14.95 16 10 C 0.11 2.06 6.43 86.36 0.56 2.61 16 11 C -0.12 -2.18 4.65 30.67 0.14 -2.04 16 12 C -0.06 -1.28 1.51 -10.77 -0.02 -1.30 16 13 C -0.06 -1.55 0.33 -52.18 -0.02 -1.57 16 14 C -0.14 -3.57 7.95 71.98 0.57 -3.00 16 15 C -0.14 -3.73 7.60 71.98 0.55 -3.18 16 16 C 0.16 5.81 4.80 86.38 0.41 6.23 16 17 N -0.75 -34.59 4.81 -343.44 -1.65 -36.24 16 18 C -0.23 -12.88 10.47 84.04 0.88 -12.00 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 22 Si 0.95 45.75 27.73 68.60 1.90 47.65 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.25 -11.02 6.52 99.48 0.65 -10.38 16 26 C -0.13 -2.61 4.65 30.68 0.14 -2.47 16 27 C 0.11 1.95 6.33 86.37 0.55 2.50 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 1.75 7.00 -2.39 -0.02 1.74 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.10 1.45 6.36 -2.39 -0.02 1.44 16 40 H 0.06 1.25 6.51 -2.39 -0.02 1.24 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.56 6.40 -2.39 -0.02 1.54 16 43 H 0.03 1.05 6.86 -2.39 -0.02 1.03 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.48 6.46 -2.38 -0.02 1.47 16 46 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 47 H 0.07 1.59 6.46 -2.39 -0.02 1.58 16 48 H 0.03 1.01 6.40 -2.38 -0.02 1.00 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.37 16.18 3.22 -92.71 -0.30 15.88 16 51 H 0.26 15.76 8.31 -92.70 -0.77 14.98 16 52 H 0.06 1.39 6.51 -2.39 -0.02 1.37 16 53 H 0.08 1.74 6.36 -2.39 -0.02 1.73 16 54 H 0.09 1.48 6.32 -2.39 -0.02 1.47 16 55 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -74.44 416.09 5.90 -68.54 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.51 Total: 25.85 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 7.36 Total: -8.50 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.81 Total: -114.27 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -74.44 5.90 -68.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101538941.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.015 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds