Wall clock time and date at job start Tue Mar 31 2020 18:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.77502 * 2 1 4 4 C 1.54323 * 110.71905 * 236.75736 * 2 1 3 5 5 N 1.47027 * 107.26985 * 219.44299 * 4 2 1 6 6 C 1.36935 * 125.64548 * 178.99477 * 5 4 2 7 7 H 1.08002 * 119.99994 * 179.97438 * 6 5 4 8 8 C 1.38814 * 120.00567 * 359.97438 * 6 5 4 9 9 N 1.31624 * 119.99215 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00354 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47093 * 89.99743 * 10 8 6 12 12 H 1.48500 * 109.46790 * 209.99752 * 10 8 6 13 13 H 1.48505 * 109.46788 * 329.99446 * 10 8 6 14 14 C 1.47471 * 108.72323 * 358.97704 * 5 4 2 15 15 C 1.54911 * 104.80712 * 24.06879 * 14 5 4 16 16 H 1.09002 * 111.00417 * 81.14023 * 15 14 5 17 17 C 1.53006 * 111.00181 * 204.94699 * 15 14 5 18 18 C 1.52997 * 109.47011 * 290.42526 * 17 15 14 19 19 N 1.46506 * 109.46794 * 180.02562 * 18 17 15 20 20 C 1.34779 * 119.99745 * 180.02562 * 19 18 17 21 21 O 1.21282 * 120.00235 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99910 * 180.02562 * 20 19 18 23 23 H 1.09007 * 108.69135 * 298.21083 * 22 20 19 24 24 C 1.51577 * 108.73202 * 56.30628 * 22 20 19 25 25 C 1.52690 * 111.46585 * 188.19477 * 24 22 20 26 26 C 1.53676 * 108.94955 * 268.95756 * 25 24 22 27 27 H 1.09001 * 115.93192 * 288.82541 * 26 25 24 28 28 C 1.55500 * 117.50002 * 140.27769 * 26 25 24 29 29 C 1.53004 * 59.76497 * 255.22446 * 28 26 25 30 30 H 1.09000 * 118.09364 * 251.63808 * 29 28 26 31 31 C 1.53677 * 117.08523 * 105.56642 * 29 28 26 32 32 C 1.51575 * 108.73400 * 179.97438 * 22 20 19 33 33 H 1.08999 * 109.46995 * 296.76332 * 1 2 3 34 34 H 1.08994 * 109.47154 * 56.76640 * 1 2 3 35 35 H 1.09005 * 109.46741 * 176.76844 * 1 2 3 36 36 H 1.09004 * 109.88217 * 338.86080 * 4 2 1 37 37 H 1.08997 * 109.88169 * 100.02518 * 4 2 1 38 38 H 0.97007 * 119.99399 * 180.02562 * 9 8 6 39 39 H 1.08993 * 110.34683 * 265.25361 * 14 5 4 40 40 H 1.08994 * 110.40058 * 142.91649 * 14 5 4 41 41 H 1.09004 * 109.46508 * 50.42096 * 17 15 14 42 42 H 1.09002 * 109.47067 * 170.42029 * 17 15 14 43 43 H 1.09004 * 109.47134 * 299.99187 * 18 17 15 44 44 H 1.09002 * 109.47611 * 59.99836 * 18 17 15 45 45 H 0.96994 * 119.99873 * 359.97438 * 19 18 17 46 46 H 1.08998 * 109.08608 * 308.71367 * 24 22 20 47 47 H 1.09006 * 109.07972 * 67.69210 * 24 22 20 48 48 H 1.09004 * 109.55663 * 149.12264 * 25 24 22 49 49 H 1.09001 * 109.64902 * 28.85430 * 25 24 22 50 50 H 1.09000 * 117.29946 * 147.77510 * 28 26 25 51 51 H 1.09003 * 117.96553 * 2.38304 * 28 26 25 52 52 H 1.09000 * 109.56422 * 98.14969 * 31 29 28 53 53 H 1.08997 * 109.64932 * 337.88173 * 31 29 28 54 54 H 1.09001 * 109.08224 * 292.30504 * 32 22 20 55 55 H 1.09008 * 109.08023 * 51.27882 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2446 -1.5508 -0.7389 6 6 4.0045 -2.3968 -1.5017 7 1 4.8470 -2.9103 -1.0624 8 6 3.6922 -2.5945 -2.8398 9 7 2.6651 -1.9690 -3.3750 10 14 4.7293 -3.7479 -3.8805 11 1 4.1702 -5.1215 -3.8038 12 1 4.7173 -3.2867 -5.2920 13 1 6.1249 -3.7524 -3.3730 14 6 3.4633 -1.2506 0.6883 15 6 2.0790 -0.7954 1.2138 16 1 1.4448 -1.6531 1.4380 17 6 2.2278 0.1081 2.4396 18 6 2.7272 -0.7195 3.6255 19 7 2.8690 0.1455 4.7994 20 6 3.2989 -0.3698 5.9682 21 8 3.5679 -1.5497 6.0484 22 6 3.4443 0.5198 7.1759 23 1 4.1853 1.2886 6.9563 24 6 2.1137 1.1931 7.4476 25 6 2.2387 2.2603 8.5324 26 6 1.9566 1.6177 9.8995 27 1 0.9203 1.3386 10.0903 28 6 2.8398 2.0644 11.0988 29 6 3.0657 0.7015 10.4411 30 1 2.7715 -0.1904 10.9942 31 6 4.3017 0.5560 9.5395 32 6 3.9394 -0.3159 8.3395 33 1 -0.3633 0.4628 0.9176 34 1 -0.3633 0.5632 -0.8595 35 1 -0.3633 -1.0261 -0.0579 36 1 1.3129 -1.4759 -1.5775 37 1 2.3741 -0.1025 -1.9977 38 1 2.4466 -2.1074 -4.3100 39 1 4.1935 -0.4491 0.7994 40 1 3.7952 -2.1436 1.2178 41 1 2.9441 0.9004 2.2221 42 1 1.2617 0.5491 2.6853 43 1 2.0108 -1.5118 3.8431 44 1 3.6932 -1.1605 3.3798 45 1 2.6543 1.0892 4.7352 46 1 1.7557 1.6585 6.5293 47 1 1.3930 0.4412 7.7690 48 1 1.5164 3.0554 8.3470 49 1 3.2470 2.6743 8.5249 50 1 2.3753 2.0759 12.0848 51 1 3.5876 2.8377 10.9229 52 1 5.1098 0.0869 10.1009 53 1 4.6208 1.5391 9.1934 54 1 3.1586 -1.0181 8.6316 55 1 4.8212 -0.8753 8.0267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103257398.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:05 Heat of formation + Delta-G solvation = -39.046435 kcal Electronic energy + Delta-G solvation = -29091.584025 eV Core-core repulsion = 25320.529211 eV Total energy + Delta-G solvation = -3771.054815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.35272 -39.88477 -39.41858 -36.48662 -35.39800 -34.95957 -32.86357 -32.52366 -32.26136 -28.95555 -27.94555 -27.21610 -25.58811 -24.99601 -23.58264 -22.65537 -22.35250 -21.47471 -20.92950 -20.50862 -19.73906 -18.85759 -18.21251 -17.30238 -16.94130 -16.83687 -16.32137 -16.01915 -15.73266 -15.61990 -15.14511 -15.08573 -14.46512 -14.45755 -14.17578 -14.01675 -13.84674 -13.66012 -13.43569 -13.35295 -13.29554 -12.93147 -12.91392 -12.79042 -12.75491 -12.69716 -12.38509 -12.21731 -12.10435 -11.91357 -11.80438 -11.65714 -11.56815 -11.43860 -11.41958 -11.25118 -11.14865 -10.86214 -10.70733 -10.62466 -10.29662 -10.04731 -8.88680 -7.85683 -5.20812 1.42823 1.45080 1.53731 1.66845 2.22334 2.48173 2.89243 3.31499 3.58016 3.63465 3.68425 3.76951 3.84327 3.96406 4.04138 4.04946 4.09039 4.15041 4.29356 4.32573 4.36751 4.39239 4.51310 4.53133 4.54778 4.62804 4.74838 4.75593 4.76454 4.83796 4.87198 4.89758 4.93858 5.01584 5.04868 5.08080 5.13570 5.19240 5.20118 5.24762 5.26725 5.29557 5.32028 5.38603 5.40859 5.46155 5.47236 5.53276 5.55133 5.58681 5.75840 5.84074 6.20847 6.61155 7.10904 7.31179 7.78883 8.43240 9.24219 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.001914 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.721146 B =14628.951763 C =15531.990106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.190 3.810 5 N -0.632 5.632 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.068 4.068 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.270 1.270 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.069 0.931 17 C -0.098 4.098 18 C 0.123 3.877 19 N -0.714 5.714 20 C 0.506 3.494 21 O -0.592 6.592 22 C -0.091 4.091 23 H 0.115 0.885 24 C -0.104 4.104 25 C -0.083 4.083 26 C -0.158 4.158 27 H 0.103 0.897 28 C -0.167 4.167 29 C -0.161 4.161 30 H 0.095 0.905 31 C -0.082 4.082 32 C -0.095 4.095 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.009 0.991 37 H -0.001 1.001 38 H 0.246 0.754 39 H 0.024 0.976 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.417 0.583 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.102 0.898 52 H 0.068 0.932 53 H 0.079 0.921 54 H 0.050 0.950 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 14.561 28.587 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.065 3.935 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.195 1.195 14 C 0.008 3.992 15 C -0.100 4.100 16 H 0.087 0.913 17 C -0.136 4.136 18 C -0.001 4.001 19 N -0.367 5.367 20 C 0.294 3.706 21 O -0.472 6.472 22 C -0.112 4.112 23 H 0.133 0.867 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.176 4.176 27 H 0.121 0.879 28 C -0.204 4.204 29 C -0.180 4.180 30 H 0.113 0.887 31 C -0.120 4.120 32 C -0.133 4.133 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.255 0.745 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.114 0.886 51 H 0.120 0.880 52 H 0.087 0.913 53 H 0.098 0.902 54 H 0.069 0.931 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.266 13.649 28.408 31.686 hybrid contribution 0.512 -1.001 -1.265 1.693 sum -2.754 12.648 27.143 30.072 Atomic orbital electron populations 1.21633 0.93165 1.01193 1.02405 1.22370 0.96794 0.98658 0.94222 0.90026 1.21015 0.87827 0.91904 0.92782 1.44849 1.32707 1.51303 1.06924 1.19453 1.07842 1.17969 0.92033 0.90488 1.25660 0.99959 1.02318 0.98177 1.70206 1.30308 1.46984 1.12399 0.85086 0.78433 0.78175 0.77703 1.21329 1.21787 1.19519 1.21836 0.96169 0.97030 0.84163 1.22202 0.95655 0.98033 0.94082 0.91261 1.21588 1.03284 0.97489 0.91232 1.21241 1.00449 0.93520 0.84906 1.45950 1.67450 1.13689 1.09592 1.21438 0.75344 0.88502 0.85347 1.90698 1.51714 1.19277 1.85495 1.20902 1.01080 0.97590 0.91590 0.86732 1.21187 0.94322 0.98299 1.00351 1.21235 1.02987 0.96762 0.91035 1.23203 0.95940 1.03750 0.94744 0.87888 1.23515 1.02663 0.97382 0.96832 1.22749 0.98046 0.94751 1.02408 0.88652 1.21236 0.96031 1.00368 0.94339 1.20941 1.00733 0.97610 0.94052 0.89780 0.92908 0.94224 0.97226 0.98239 0.94448 0.95791 0.95217 0.90081 0.88330 0.92737 0.93552 0.74540 0.89681 0.92506 0.89832 0.90553 0.88564 0.87996 0.91305 0.90236 0.93089 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.16 71.98 0.66 -2.96 16 2 C -0.10 -3.51 3.02 -9.60 -0.03 -3.54 16 3 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 4 C 0.19 9.53 4.97 86.73 0.43 9.96 16 5 N -0.63 -33.75 3.40 -691.87 -2.35 -36.10 16 6 C -0.24 -14.31 10.28 84.03 0.86 -13.45 16 7 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 8 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 9 N -0.95 -58.80 10.31 21.65 0.22 -58.57 16 10 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 C 0.13 5.54 6.04 86.85 0.52 6.06 16 15 C -0.08 -2.55 2.48 -9.40 -0.02 -2.57 16 16 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 17 C -0.10 -2.09 4.84 30.60 0.15 -1.94 16 18 C 0.12 2.93 5.55 86.38 0.48 3.41 16 19 N -0.71 -13.02 5.35 -463.03 -2.48 -15.50 16 20 C 0.51 11.35 7.14 87.66 0.63 11.98 16 21 O -0.59 -19.60 15.75 -3.03 -0.05 -19.65 16 22 C -0.09 -1.30 2.04 -12.47 -0.03 -1.32 16 23 H 0.11 1.17 7.89 -2.38 -0.02 1.15 16 24 C -0.10 -1.06 4.81 30.02 0.14 -0.91 16 25 C -0.08 -0.64 5.44 30.72 0.17 -0.47 16 26 C -0.16 -1.57 5.76 -9.46 -0.05 -1.63 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 C -0.17 -1.49 9.96 31.46 0.31 -1.18 16 29 C -0.16 -1.87 5.58 -10.32 -0.06 -1.93 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 C -0.08 -0.99 5.41 30.72 0.17 -0.82 16 32 C -0.10 -1.62 4.25 30.03 0.13 -1.49 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.24 8.06 -2.38 -0.02 1.22 16 36 H 0.01 0.54 7.01 -2.39 -0.02 0.52 16 37 H 0.00 -0.04 7.50 -2.39 -0.02 -0.05 16 38 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 39 H 0.02 0.98 7.96 -2.39 -0.02 0.96 16 40 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 41 H 0.08 1.60 8.04 -2.38 -0.02 1.58 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.05 1.35 7.59 -2.39 -0.02 1.33 16 45 H 0.42 4.45 7.50 -92.71 -0.70 3.75 16 46 H 0.08 0.58 6.98 -2.39 -0.02 0.56 16 47 H 0.06 0.76 7.79 -2.38 -0.02 0.74 16 48 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.08 0.50 6.21 -2.39 -0.01 0.48 16 50 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.08 0.75 6.20 -2.39 -0.01 0.73 16 54 H 0.05 1.04 7.79 -2.39 -0.02 1.02 16 55 H 0.05 1.08 7.73 -2.38 -0.02 1.07 16 Total: -1.00 -76.56 413.89 2.45 -74.11 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.15 Total: 12.64 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.93 Total: -6.37 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.60 Total: -110.18 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -76.56 2.45 -74.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103257398.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.059 kcal (2) G-P(sol) polarization free energy of solvation -76.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds