Wall clock time and date at job start Tue Mar 31 2020 18:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.64012 * 2 1 4 4 C 1.54327 * 110.71790 * 236.66851 * 2 1 3 5 5 N 1.47288 * 107.30077 * 219.45575 * 4 2 1 6 6 C 1.36939 * 125.79182 * 178.92855 * 5 4 2 7 7 H 1.08001 * 120.00190 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99804 * 359.97438 * 6 5 4 9 9 N 1.31615 * 120.00075 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99791 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47500 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46918 * 120.00154 * 10 8 6 13 13 H 1.48503 * 109.47144 * 239.99827 * 10 8 6 14 14 C 1.47426 * 108.56210 * 358.92274 * 5 4 2 15 15 C 1.54908 * 104.92866 * 24.15744 * 14 5 4 16 16 H 1.09000 * 111.00303 * 81.04593 * 15 14 5 17 17 C 1.52995 * 111.00402 * 204.86671 * 15 14 5 18 18 C 1.53010 * 109.46665 * 293.54076 * 17 15 14 19 19 N 1.46502 * 109.46737 * 180.02562 * 18 17 15 20 20 C 1.34774 * 119.99673 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00212 * 359.97438 * 20 19 18 22 22 C 1.50701 * 120.00058 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47248 * 178.70632 * 22 20 19 24 24 C 1.53009 * 109.46893 * 66.33462 * 23 22 20 25 25 C 1.52996 * 117.49864 * 248.74674 * 24 23 22 26 26 C 1.52997 * 117.49839 * 180.08569 * 24 23 22 27 27 C 1.52997 * 109.47182 * 186.33404 * 23 22 20 28 28 C 1.52995 * 117.49730 * 134.82675 * 27 23 22 29 29 C 1.53005 * 117.49763 * 66.16877 * 27 23 22 30 30 H 1.09000 * 109.46927 * 296.85895 * 1 2 3 31 31 H 1.09002 * 109.46702 * 56.85372 * 1 2 3 32 32 H 1.08991 * 109.47219 * 176.85671 * 1 2 3 33 33 H 1.08995 * 109.88193 * 338.85652 * 4 2 1 34 34 H 1.08994 * 109.88410 * 100.02795 * 4 2 1 35 35 H 0.97003 * 120.00450 * 180.02562 * 9 8 6 36 36 H 1.09005 * 110.36341 * 265.26293 * 14 5 4 37 37 H 1.08995 * 110.36824 * 143.05405 * 14 5 4 38 38 H 1.08999 * 109.47567 * 53.54231 * 17 15 14 39 39 H 1.09004 * 109.47209 * 173.54851 * 17 15 14 40 40 H 1.08999 * 109.47255 * 300.00346 * 18 17 15 41 41 H 1.08997 * 109.46991 * 60.00669 * 18 17 15 42 42 H 0.96995 * 120.00199 * 359.97438 * 19 18 17 43 43 H 1.09000 * 109.47074 * 298.70634 * 22 20 19 44 44 H 1.08998 * 109.46785 * 58.70756 * 22 20 19 45 45 H 1.09002 * 109.47011 * 306.33776 * 23 22 20 46 46 H 1.08997 * 115.54576 * 34.41671 * 24 23 22 47 47 H 1.08999 * 117.49931 * 359.97438 * 25 24 23 48 48 H 1.08996 * 117.49960 * 145.02450 * 25 24 23 49 49 H 1.09000 * 117.49700 * 214.98332 * 26 24 23 50 50 H 1.09004 * 117.49781 * 359.97438 * 26 24 23 51 51 H 1.09003 * 115.55365 * 280.49827 * 27 23 22 52 52 H 1.08996 * 117.50237 * 0.02562 * 28 27 23 53 53 H 1.09007 * 117.49716 * 145.01986 * 28 27 23 54 54 H 1.09000 * 117.49483 * 214.98222 * 29 27 23 55 55 H 1.09000 * 117.49520 * 359.97438 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2465 -1.5539 -0.7364 6 6 4.0073 -2.4026 -1.4954 7 1 4.8492 -2.9146 -1.0534 8 6 3.6961 -2.6050 -2.8330 9 7 2.6704 -1.9807 -3.3719 10 14 4.7334 -3.7633 -3.8682 11 1 5.8198 -4.3354 -3.0330 12 1 3.8792 -4.8605 -4.3896 13 1 5.3262 -3.0145 -5.0054 14 6 3.4633 -1.2487 0.6896 15 6 2.0790 -0.7934 1.2151 16 1 1.4454 -1.6512 1.4409 17 6 2.2279 0.1121 2.4393 18 6 2.8019 -0.6963 3.6047 19 7 2.9439 0.1707 4.7771 20 6 3.4341 -0.3287 5.9290 21 8 3.7573 -1.4957 5.9951 22 6 3.5808 0.5632 7.1349 23 6 4.1250 -0.2525 8.3094 24 6 5.5539 -0.7028 7.9989 25 6 5.7886 -2.1963 7.7638 26 6 6.2769 -1.5386 9.0570 27 6 4.1253 0.6103 9.5728 28 6 3.5949 -0.0228 10.8607 29 6 2.7689 1.0416 10.1341 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0260 -0.0563 33 1 1.3130 -1.4784 -1.5751 34 1 2.3741 -0.1057 -1.9976 35 1 2.4527 -2.1224 -4.3065 36 1 4.1932 -0.4465 0.7991 37 1 3.7969 -2.1394 1.2218 38 1 2.9009 0.9360 2.2022 39 1 1.2518 0.5091 2.7185 40 1 2.1288 -1.5202 3.8418 41 1 3.7779 -1.0932 3.3256 42 1 2.6858 1.1041 4.7242 43 1 4.2715 1.3744 6.9050 44 1 2.6084 0.9781 7.4003 45 1 3.4944 -1.1276 8.4671 46 1 6.1517 -0.0016 7.4166 47 1 4.9252 -2.8581 7.8308 48 1 6.5411 -2.4777 7.0272 49 1 7.3504 -1.3876 9.1705 50 1 5.7346 -1.7674 9.9745 51 1 4.9534 1.3136 9.6617 52 1 3.2461 -1.0540 10.8080 53 1 4.0738 0.2643 11.7969 54 1 2.7047 2.0285 10.5925 55 1 1.8763 0.7110 9.6030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103758347.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:52 Heat of formation + Delta-G solvation = -4.908880 kcal Electronic energy + Delta-G solvation = -28937.142698 eV Core-core repulsion = 25167.568199 eV Total energy + Delta-G solvation = -3769.574499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.97448 -39.82423 -39.10530 -36.94424 -36.31098 -34.95443 -33.06538 -32.52823 -32.03608 -28.57894 -27.53918 -26.43201 -25.25970 -23.50636 -23.20336 -23.07633 -22.25686 -21.55973 -21.29441 -20.68575 -20.43503 -18.86085 -17.89710 -17.04416 -16.95202 -16.73200 -16.39920 -16.10447 -15.95018 -15.55718 -15.32694 -15.13053 -14.77555 -14.48143 -14.22875 -14.14793 -13.84377 -13.43035 -13.37277 -13.22229 -13.09868 -12.92081 -12.80636 -12.69635 -12.39601 -12.36067 -12.35372 -12.25542 -12.17434 -11.96770 -11.89331 -11.79571 -11.42354 -11.28459 -11.20375 -11.12305 -11.07457 -10.85824 -10.72896 -10.65831 -10.42135 -9.94094 -8.89263 -7.86464 -5.21449 1.42556 1.43691 1.54249 1.82946 2.31317 2.47575 2.94121 3.07021 3.31003 3.62099 3.66245 3.76376 3.82855 3.97034 3.99225 4.04209 4.12241 4.18347 4.25478 4.27928 4.33850 4.37319 4.42224 4.49523 4.54126 4.62841 4.67998 4.74922 4.76330 4.82684 4.83388 4.86242 4.89539 4.91903 5.01614 5.06446 5.10799 5.14056 5.14893 5.16203 5.21694 5.30017 5.34260 5.34506 5.37140 5.40647 5.46088 5.54292 5.54978 5.61425 5.74907 5.83263 6.20022 6.73035 7.09954 7.45347 7.77794 8.42818 9.23935 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.002064 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.252032 B =13564.997923 C =14958.816172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.242 4.242 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.134 3.866 15 C -0.079 4.079 16 H 0.069 0.931 17 C -0.098 4.098 18 C 0.126 3.874 19 N -0.721 5.721 20 C 0.500 3.500 21 O -0.572 6.572 22 C -0.124 4.124 23 C -0.006 4.006 24 C -0.136 4.136 25 C -0.171 4.171 26 C -0.171 4.171 27 C -0.141 4.141 28 C -0.186 4.186 29 C -0.175 4.175 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.010 0.990 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.023 0.977 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.416 0.584 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.056 0.944 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.113 0.887 52 H 0.083 0.917 53 H 0.101 0.899 54 H 0.107 0.893 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 11.962 28.892 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.099 0.901 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.371 4.371 7 H 0.095 0.905 8 C -0.262 4.262 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.009 3.991 15 C -0.099 4.099 16 H 0.088 0.912 17 C -0.136 4.136 18 C 0.002 3.998 19 N -0.374 5.374 20 C 0.287 3.713 21 O -0.451 6.451 22 C -0.164 4.164 23 C -0.024 4.024 24 C -0.154 4.154 25 C -0.208 4.208 26 C -0.208 4.208 27 C -0.159 4.159 28 C -0.223 4.223 29 C -0.212 4.212 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.018 0.982 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.252 0.748 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.131 0.869 52 H 0.102 0.898 53 H 0.119 0.881 54 H 0.125 0.875 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.191 11.044 28.737 30.809 hybrid contribution 0.563 -0.817 -1.508 1.805 sum -0.628 10.227 27.229 29.093 Atomic orbital electron populations 1.21635 0.93148 1.01213 1.02405 1.22372 0.96826 0.98616 0.94255 0.90088 1.21059 0.87814 0.91891 0.92798 1.44912 1.32729 1.51183 1.07025 1.19480 1.07753 1.17755 0.92099 0.90489 1.25663 0.99979 1.02383 0.98172 1.70199 1.30377 1.47042 1.12315 0.85014 0.77928 0.77974 0.78466 1.19237 1.21770 1.21694 1.21807 0.96177 0.96929 0.84192 1.22199 0.95591 0.98028 0.94110 0.91249 1.21582 1.02852 0.97571 0.91600 1.21160 1.00076 0.93454 0.85100 1.45960 1.65792 1.14776 1.10895 1.21356 0.76031 0.88742 0.85133 1.90727 1.50169 1.19522 1.84707 1.21721 1.05194 0.98352 0.91093 1.19993 0.93701 0.96426 0.92324 1.22173 0.96805 0.93739 1.02671 1.22680 1.02242 0.96291 0.99576 1.23006 1.00456 1.04079 0.93221 1.22175 0.98377 1.02236 0.93121 1.23040 1.04680 0.98231 0.96308 1.23046 0.94499 0.99871 1.03759 0.89783 0.92915 0.94186 0.97160 0.98241 0.94433 0.95968 0.95273 0.90247 0.88452 0.92929 0.93780 0.74753 0.86704 0.86535 0.92557 0.88387 0.90588 0.90782 0.88439 0.88480 0.86859 0.89822 0.88061 0.87513 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.16 71.98 0.66 -2.98 16 2 C -0.10 -3.54 3.02 -9.60 -0.03 -3.57 16 3 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 4 C 0.19 9.54 4.98 86.68 0.43 9.97 16 5 N -0.63 -33.94 3.40 -691.31 -2.35 -36.30 16 6 C -0.24 -14.23 10.28 84.03 0.86 -13.37 16 7 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 9 N -0.95 -58.97 10.34 21.65 0.22 -58.74 16 10 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 C 0.13 5.62 5.89 86.85 0.51 6.13 16 15 C -0.08 -2.55 2.52 -9.40 -0.02 -2.57 16 16 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 17 C -0.10 -2.11 4.84 30.60 0.15 -1.96 16 18 C 0.13 2.99 5.52 86.38 0.48 3.47 16 19 N -0.72 -12.67 5.56 -463.05 -2.57 -15.25 16 20 C 0.50 10.34 7.60 87.66 0.67 11.00 16 21 O -0.57 -17.17 13.52 -3.03 -0.04 -17.21 16 22 C -0.12 -1.54 5.11 29.85 0.15 -1.38 16 23 C -0.01 -0.08 1.76 -10.79 -0.02 -0.10 16 24 C -0.14 -2.46 4.33 -10.79 -0.05 -2.51 16 25 C -0.17 -3.90 8.61 30.62 0.26 -3.64 16 26 C -0.17 -2.89 9.88 30.62 0.30 -2.58 16 27 C -0.14 -1.53 4.72 -10.79 -0.05 -1.58 16 28 C -0.19 -2.01 10.18 30.62 0.31 -1.70 16 29 C -0.17 -1.57 9.75 30.62 0.30 -1.27 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 33 H 0.01 0.58 7.01 -2.39 -0.02 0.56 16 34 H 0.00 -0.04 7.52 -2.39 -0.02 -0.06 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.02 0.92 8.00 -2.38 -0.02 0.90 16 37 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 38 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.29 7.45 -2.39 -0.02 1.27 16 42 H 0.42 4.25 8.47 -92.71 -0.79 3.47 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.12 0.91 7.54 -2.39 -0.02 0.89 16 45 H 0.06 1.12 7.50 -2.39 -0.02 1.11 16 46 H 0.10 1.73 8.11 -2.39 -0.02 1.71 16 47 H 0.08 2.01 7.84 -2.39 -0.02 1.99 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 51 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 53 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 54 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 55 H 0.09 0.85 7.98 -2.39 -0.02 0.83 16 Total: -1.00 -75.63 428.84 2.72 -72.92 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.05 Total: 17.28 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.38 Total: -12.28 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.70 Total: -110.29 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.04 Total: -17.21 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -75.63 2.72 -72.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103758347.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.008 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds