Wall clock time and date at job start Tue Mar 31 2020 18:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.66010 * 2 1 4 4 C 1.54600 * 110.82860 * 236.75618 * 2 1 3 5 5 N 1.48118 * 103.42032 * 204.44423 * 4 2 1 6 6 C 1.34778 * 127.03887 * 219.28604 * 5 4 2 7 7 O 1.21278 * 120.00328 * 184.56028 * 6 5 4 8 8 C 1.50706 * 119.99482 * 4.55742 * 6 5 4 9 9 C 1.53001 * 109.46902 * 244.76093 * 8 6 5 10 10 C 1.53785 * 113.61405 * 54.90959 * 9 8 6 11 11 C 1.53781 * 87.08003 * 140.06463 * 10 9 8 12 12 C 1.53782 * 87.17348 * 334.52134 * 11 10 9 13 13 C 1.52997 * 109.47049 * 124.76152 * 8 6 5 14 14 C 1.53782 * 113.61358 * 279.13868 * 13 8 6 15 15 C 1.53958 * 87.01495 * 220.04404 * 14 13 8 16 16 C 1.53771 * 87.11106 * 25.36481 * 15 14 13 17 17 C 1.47490 * 105.93315 * 39.02819 * 5 4 2 18 18 C 1.54009 * 107.07811 * 334.77468 * 17 5 4 19 19 H 1.09003 * 110.32136 * 120.20240 * 18 17 5 20 20 C 1.53000 * 110.32569 * 242.41140 * 18 17 5 21 21 N 1.46494 * 109.47663 * 293.54914 * 20 18 17 22 22 C 1.36936 * 120.00409 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99755 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00222 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00016 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00004 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47520 * 89.99988 * 26 24 22 28 28 H 1.48500 * 109.46765 * 210.00113 * 26 24 22 29 29 H 1.48502 * 109.47038 * 329.99671 * 26 24 22 30 30 H 1.08993 * 109.46736 * 296.80777 * 1 2 3 31 31 H 1.09002 * 109.47235 * 56.80625 * 1 2 3 32 32 H 1.08997 * 109.47195 * 176.80916 * 1 2 3 33 33 H 1.08999 * 110.62287 * 85.93643 * 4 2 1 34 34 H 1.08998 * 110.54888 * 322.92576 * 4 2 1 35 35 H 1.08996 * 109.47038 * 4.76448 * 8 6 5 36 36 H 1.08998 * 112.84794 * 283.70690 * 9 8 6 37 37 H 1.09002 * 113.61393 * 25.51053 * 10 9 8 38 38 H 1.08998 * 113.61048 * 254.61285 * 10 9 8 39 39 H 1.08996 * 113.61979 * 89.11575 * 11 10 9 40 40 H 1.09004 * 113.61118 * 219.93681 * 11 10 9 41 41 H 1.09004 * 113.61268 * 140.02665 * 12 11 10 42 42 H 1.09003 * 113.61702 * 270.92770 * 12 11 10 43 43 H 1.09010 * 112.84564 * 50.33021 * 13 8 6 44 44 H 1.08998 * 113.61352 * 334.56608 * 14 13 8 45 45 H 1.09001 * 113.61385 * 105.47212 * 14 13 8 46 46 H 1.08999 * 113.53847 * 270.80905 * 15 14 13 47 47 H 1.09004 * 113.74070 * 139.94388 * 15 14 13 48 48 H 1.09008 * 113.61432 * 220.08959 * 16 15 14 49 49 H 1.08998 * 113.69823 * 89.19974 * 16 15 14 50 50 H 1.08996 * 109.91692 * 94.13701 * 17 5 4 51 51 H 1.09003 * 109.91573 * 215.23019 * 17 5 4 52 52 H 1.09001 * 109.47211 * 53.55488 * 20 18 17 53 53 H 1.09000 * 109.46686 * 173.54611 * 20 18 17 54 54 H 0.97005 * 119.99963 * 0.02562 * 21 20 18 55 55 H 0.97004 * 120.00143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0797 -0.7921 -1.2085 5 7 3.4279 -1.2112 -0.7603 6 6 4.5538 -1.2497 -1.5001 7 8 5.5770 -1.6943 -1.0245 8 6 4.5412 -0.7404 -2.9184 9 6 4.8132 -1.8997 -3.8791 10 6 3.8492 -3.0849 -3.7028 11 6 3.8354 -3.2001 -5.2362 12 6 4.1929 -1.7050 -5.2757 13 6 5.6248 0.3264 -3.0868 14 6 5.2058 1.7159 -2.5781 15 6 5.9213 2.2948 -3.8122 16 6 5.6713 0.9404 -4.4960 17 6 3.2875 -1.5718 0.6629 18 6 2.0776 -0.7916 1.2099 19 1 1.3210 -1.4808 1.5853 20 6 2.5201 0.1678 2.3166 21 7 2.9887 -0.6018 3.4717 22 6 3.4379 0.0475 4.5905 23 1 3.4463 1.1270 4.6215 24 6 3.8825 -0.6818 5.6847 25 7 4.3146 -0.0577 6.7599 26 14 3.8687 -2.5490 5.6308 27 1 5.1633 -3.0383 5.0927 28 1 3.6694 -3.0823 7.0023 29 1 2.7622 -3.0107 4.7546 30 1 -0.3632 0.4635 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3633 -1.0260 -0.0572 33 1 2.1487 -0.1519 -2.0879 34 1 1.4547 -1.6615 -1.4124 35 1 3.5663 -0.3061 -3.1398 36 1 5.8632 -2.1909 -3.9044 37 1 2.8857 -2.8045 -3.2772 38 1 4.2994 -3.9434 -3.2045 39 1 4.6181 -3.8469 -5.6326 40 1 2.8516 -3.4248 -5.6483 41 1 4.9204 -1.4502 -6.0465 42 1 3.3231 -1.0479 -5.2795 43 1 6.5986 0.0023 -2.7194 44 1 4.1276 1.8758 -2.5834 45 1 5.6713 1.9932 -1.6323 46 1 6.9763 2.5102 -3.6426 47 1 5.3897 3.1242 -4.2789 48 1 6.5120 0.5924 -5.0963 49 1 4.7210 0.8866 -5.0272 50 1 3.1125 -2.6434 0.7589 51 1 4.1896 -1.2928 1.2074 52 1 3.3287 0.7991 1.9483 53 1 1.6779 0.7927 2.6138 54 1 2.9816 -1.5715 3.4437 55 1 4.6257 -0.5673 7.5244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106588105.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:28 Heat of formation + Delta-G solvation = -14.150345 kcal Electronic energy + Delta-G solvation = -30765.059684 eV Core-core repulsion = 26995.084445 eV Total energy + Delta-G solvation = -3769.975239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.82884 -40.24910 -38.76890 -38.71965 -36.62738 -34.23475 -33.32715 -32.17231 -30.78765 -27.58079 -27.22154 -26.79603 -26.33531 -25.48124 -24.90003 -23.55467 -22.37074 -21.24597 -20.74954 -20.05530 -19.84056 -19.67700 -18.10360 -17.33331 -16.87114 -16.65387 -16.47377 -16.21106 -16.05252 -15.64978 -15.32838 -15.06204 -14.83533 -14.81352 -14.21300 -14.08150 -13.80860 -13.55109 -13.42611 -13.37033 -13.32612 -13.14005 -13.13737 -12.90447 -12.83480 -12.69792 -12.58590 -12.33826 -12.17045 -12.12166 -11.90750 -11.79940 -11.50855 -11.47707 -11.42764 -11.38014 -11.24633 -11.17003 -11.04836 -10.67349 -10.55659 -9.72716 -9.35690 -8.08333 -5.41745 1.30859 1.36430 1.42011 1.61192 1.94614 2.42728 3.23095 3.28297 3.40384 3.50752 3.62147 3.66895 3.70660 3.79862 3.85820 3.95256 3.98643 4.00612 4.07720 4.13145 4.20164 4.30150 4.40742 4.47315 4.51100 4.55382 4.58048 4.65570 4.73440 4.84150 4.84933 4.85859 4.88781 4.89083 4.91588 4.92966 4.98850 5.03143 5.07886 5.10373 5.11358 5.15895 5.18921 5.19580 5.25393 5.33267 5.37696 5.42560 5.55731 5.61341 5.63008 5.69848 6.15779 6.58080 7.02169 7.17016 7.78099 7.96608 9.13366 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.012988 B = 0.003145 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.328690 B = 8901.433910 C = 9116.430327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.081 0.919 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.532 3.468 7 O -0.599 6.599 8 C -0.069 4.069 9 C -0.098 4.098 10 C -0.148 4.148 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.105 4.105 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.111 4.111 17 C 0.107 3.893 18 C -0.096 4.096 19 H 0.098 0.902 20 C 0.167 3.833 21 N -0.758 5.758 22 C -0.236 4.236 23 H 0.056 0.944 24 C -0.062 4.062 25 N -0.983 5.983 26 Si 0.951 3.049 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.247 1.247 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.063 0.937 51 H 0.040 0.960 52 H 0.009 0.991 53 H 0.035 0.965 54 H 0.365 0.635 55 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.585 -1.214 -33.648 34.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.480 6.480 8 C -0.089 4.089 9 C -0.117 4.117 10 C -0.185 4.185 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.124 4.124 14 C -0.183 4.183 15 C -0.175 4.175 16 C -0.148 4.148 17 C -0.016 4.016 18 C -0.115 4.115 19 H 0.116 0.884 20 C 0.041 3.959 21 N -0.404 5.404 22 C -0.367 4.367 23 H 0.074 0.926 24 C -0.254 4.254 25 N -0.633 5.633 26 Si 0.778 3.222 27 H -0.213 1.213 28 H -0.215 1.215 29 H -0.171 1.171 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.125 0.875 50 H 0.081 0.919 51 H 0.058 0.942 52 H 0.027 0.973 53 H 0.053 0.947 54 H 0.198 0.802 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.926 -1.267 -33.342 34.294 hybrid contribution 1.031 -1.109 1.703 2.279 sum -6.895 -2.376 -31.639 32.468 Atomic orbital electron populations 1.21717 0.91502 1.03101 1.02924 1.22212 0.97760 0.99019 0.92048 0.90071 1.22905 0.81072 0.99801 0.97994 1.48993 1.09791 1.65576 1.10720 1.21120 0.80941 0.76958 0.88699 1.90674 1.33794 1.48949 1.74570 1.21407 1.01958 0.96963 0.88611 1.22473 0.99346 0.93810 0.96081 1.23032 0.99725 0.97604 0.98180 1.22768 1.02582 0.97395 0.94447 1.23017 1.01127 0.96635 0.94348 1.22466 0.97261 0.92949 0.99723 1.23098 1.01593 0.95805 0.97840 1.22807 1.00496 0.97969 0.96222 1.22884 1.03473 0.94459 0.94013 1.21985 0.98531 0.98863 0.82235 1.22338 0.96204 0.97545 0.95448 0.88422 1.20808 0.95885 0.93369 0.85864 1.42745 1.78555 1.04693 1.14414 1.19031 1.33423 0.91980 0.92236 0.92613 1.25493 1.01415 1.02661 0.95818 1.69875 1.50853 1.36384 1.06205 0.85469 0.78601 0.80911 0.77241 1.21347 1.21544 1.17094 0.92853 0.89920 0.91381 0.87176 0.88554 0.86572 0.90814 0.89367 0.94100 0.90502 0.89905 0.90166 0.87916 0.91844 0.88460 0.94338 0.91045 0.89618 0.90989 0.87451 0.91908 0.94172 0.97268 0.94656 0.80204 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.16 71.98 0.66 -1.14 16 2 C -0.09 -1.69 3.19 -9.70 -0.03 -1.72 16 3 H 0.08 1.63 7.86 -2.39 -0.02 1.61 16 4 C 0.10 1.60 6.37 86.61 0.55 2.16 16 5 N -0.62 -16.11 3.29 -810.05 -2.67 -18.78 16 6 C 0.53 15.58 5.96 87.66 0.52 16.10 16 7 O -0.60 -24.52 17.07 -3.02 -0.05 -24.57 16 8 C -0.07 -1.29 1.66 -11.54 -0.02 -1.31 16 9 C -0.10 -1.65 2.92 -10.17 -0.03 -1.68 16 10 C -0.15 -2.43 6.94 31.12 0.22 -2.21 16 11 C -0.13 -1.48 8.07 31.12 0.25 -1.23 16 12 C -0.11 -1.06 6.10 31.21 0.19 -0.87 16 13 C -0.10 -2.07 3.01 -10.27 -0.03 -2.10 16 14 C -0.15 -2.75 7.62 31.18 0.24 -2.51 16 15 C -0.14 -1.95 8.09 31.18 0.25 -1.70 16 16 C -0.11 -1.37 6.56 31.12 0.20 -1.16 16 17 C 0.11 3.44 6.29 86.53 0.54 3.99 16 18 C -0.10 -2.68 2.65 -9.90 -0.03 -2.71 16 19 H 0.10 2.54 7.85 -2.39 -0.02 2.52 16 20 C 0.17 6.45 5.34 86.38 0.46 6.91 16 21 N -0.76 -37.03 5.14 -343.47 -1.76 -38.79 16 22 C -0.24 -14.09 10.47 84.03 0.88 -13.21 16 23 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 24 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 25 N -0.98 -65.21 13.97 21.65 0.30 -64.91 16 26 Si 0.95 47.65 27.74 68.60 1.90 49.55 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 29 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.11 1.06 6.22 -2.39 -0.01 1.04 16 34 H 0.10 1.13 8.01 -2.39 -0.02 1.11 16 35 H 0.12 1.45 5.42 -2.39 -0.01 1.44 16 36 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 37 H 0.09 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.10 0.57 7.91 -2.39 -0.02 0.55 16 43 H 0.06 1.70 7.94 -2.38 -0.02 1.68 16 44 H 0.10 1.47 7.99 -2.39 -0.02 1.45 16 45 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.11 0.83 7.33 -2.39 -0.02 0.81 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 51 H 0.04 1.67 7.53 -2.39 -0.02 1.65 16 52 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 53 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 54 H 0.36 17.07 5.37 -92.70 -0.50 16.57 16 55 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -81.28 419.81 3.30 -77.98 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.28 Total: 27.29 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.30 Total: -7.77 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -4.13 Total: -122.48 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.90 Total: 49.55 kcal Total: -81.28 3.30 -77.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106588105.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.829 kcal (2) G-P(sol) polarization free energy of solvation -81.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds