Wall clock time and date at job start Tue Mar 31 2020 18:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.28897 * 2 1 4 4 C 1.53997 * 110.32972 * 237.86839 * 2 1 3 5 5 N 1.47491 * 107.08624 * 242.41087 * 4 2 1 6 6 C 1.34777 * 127.03617 * 154.51108 * 5 4 2 7 7 O 1.21283 * 119.99750 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99928 * 0.30701 * 6 5 4 9 9 C 1.54893 * 129.08799 * 299.65632 * 8 6 5 10 10 C 1.57163 * 77.91494 * 180.16586 * 9 8 6 11 11 C 1.53003 * 129.25033 * 179.19490 * 10 9 8 12 12 C 1.52996 * 109.46944 * 301.28799 * 11 10 9 13 13 C 1.53000 * 109.47125 * 61.28848 * 11 10 9 14 14 C 1.53004 * 109.47065 * 181.28534 * 11 10 9 15 15 C 1.54410 * 129.01115 * 179.72317 * 8 6 5 16 16 C 1.54881 * 129.09020 * 59.78198 * 8 6 5 17 17 C 1.48119 * 105.92795 * 334.77764 * 5 4 2 18 18 C 1.54599 * 103.42335 * 39.02542 * 17 5 4 19 19 H 1.08998 * 110.73434 * 81.24140 * 18 17 5 20 20 C 1.53003 * 110.83077 * 204.44701 * 18 17 5 21 21 N 1.46501 * 109.46890 * 288.55652 * 20 18 17 22 22 C 1.36940 * 120.00047 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99827 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99930 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00117 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00440 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47451 * 90.00217 * 26 24 22 28 28 H 1.48497 * 109.47716 * 210.00389 * 26 24 22 29 29 H 1.48504 * 109.46972 * 330.00532 * 26 24 22 30 30 H 1.09001 * 109.46710 * 180.67773 * 1 2 3 31 31 H 1.08994 * 109.47145 * 300.67943 * 1 2 3 32 32 H 1.08996 * 109.47019 * 60.68409 * 1 2 3 33 33 H 1.09001 * 109.92008 * 123.05168 * 4 2 1 34 34 H 1.09001 * 110.07739 * 1.85995 * 4 2 1 35 35 H 1.08990 * 114.97952 * 291.96593 * 9 8 6 36 36 H 1.09006 * 114.97233 * 67.13264 * 9 8 6 37 37 H 1.08991 * 109.47376 * 60.00173 * 12 11 10 38 38 H 1.09006 * 109.46839 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47233 * 299.99802 * 12 11 10 40 40 H 1.09007 * 109.47224 * 60.00029 * 13 11 10 41 41 H 1.08993 * 109.47307 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.47083 * 300.00239 * 13 11 10 43 43 H 1.09001 * 109.47041 * 60.00242 * 14 11 10 44 44 H 1.09002 * 109.47010 * 179.97438 * 14 11 10 45 45 H 1.08998 * 109.47082 * 300.00030 * 14 11 10 46 46 H 1.09001 * 114.93321 * 293.12519 * 15 8 6 47 47 H 1.08997 * 114.93292 * 68.15445 * 15 8 6 48 48 H 1.09001 * 114.98050 * 292.87223 * 16 8 6 49 49 H 1.09004 * 114.97933 * 68.04276 * 16 8 6 50 50 H 1.09002 * 110.65999 * 157.50143 * 17 5 4 51 51 H 1.08995 * 110.66402 * 280.62090 * 17 5 4 52 52 H 1.09001 * 109.47462 * 48.55947 * 20 18 17 53 53 H 1.08995 * 109.46778 * 168.56333 * 20 18 17 54 54 H 0.97004 * 119.99994 * 0.02562 * 21 20 18 55 55 H 0.96999 * 120.00267 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8278 -1.9216 -0.7103 6 6 3.0615 -3.0872 -1.3454 7 8 3.7093 -3.9555 -0.8002 8 6 2.5231 -3.3090 -2.7354 9 6 1.0539 -3.3053 -3.2258 10 6 1.8426 -3.6049 -4.5517 11 6 1.3054 -3.8512 -5.9630 12 6 0.3622 -5.0558 -5.9466 13 6 0.5438 -2.6137 -6.4420 14 6 2.4729 -4.1304 -6.9116 15 6 2.6684 -4.5460 -3.6480 16 6 2.8019 -2.5063 -4.0303 17 6 3.2790 -1.5396 0.6478 18 6 2.0671 -0.7735 1.2263 19 1 1.3164 -1.4676 1.6040 20 6 2.5095 0.1940 2.3259 21 7 2.9003 -0.5654 3.5163 22 6 3.3343 0.0924 4.6362 23 1 3.3889 1.1710 4.6417 24 6 3.7051 -0.6272 5.7638 25 7 4.1218 0.0051 6.8403 26 14 3.6114 -2.4928 5.7540 27 1 4.9026 -3.0508 5.2781 28 1 3.3375 -2.9820 7.1290 29 1 2.5194 -2.9287 4.8468 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5243 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7181 -0.1226 -1.8102 34 1 1.2355 -1.1156 -1.8387 35 1 0.4450 -4.1326 -2.8615 36 1 0.5555 -2.3370 -3.1787 37 1 -0.4695 -4.8569 -5.2709 38 1 -0.0208 -5.2310 -6.9520 39 1 0.9048 -5.9375 -5.6054 40 1 1.2158 -1.7555 -6.4537 41 1 0.1607 -2.7893 -7.4472 42 1 -0.2879 -2.4148 -5.7662 43 1 3.0155 -5.0121 -6.5704 44 1 2.0902 -4.3063 -7.9170 45 1 3.1448 -3.2722 -6.9233 46 1 3.6823 -4.7440 -3.9957 47 1 2.1391 -5.4349 -3.3049 48 1 2.4126 -1.4882 -4.0335 49 1 3.8185 -2.5908 -4.4143 50 1 3.4936 -2.4257 1.2452 51 1 4.1523 -0.8897 0.5943 52 1 3.3584 0.7804 1.9741 53 1 1.6850 0.8617 2.5755 54 1 2.8516 -1.5342 3.5111 55 1 4.3805 -0.4977 7.6285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107054299.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:45 Heat of formation + Delta-G solvation = 41.318818 kcal Electronic energy + Delta-G solvation = -30088.735048 eV Core-core repulsion = 26321.165132 eV Total energy + Delta-G solvation = -3767.569916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.24965 -40.87463 -39.00848 -36.80546 -36.62362 -34.20925 -33.29439 -31.17719 -28.30474 -28.29295 -28.13071 -27.31786 -26.42328 -26.36276 -25.82387 -24.45780 -22.79772 -21.82762 -21.22906 -19.96446 -19.39005 -18.51695 -17.79005 -17.30733 -16.74345 -16.56322 -15.94948 -15.63435 -15.44765 -15.25983 -15.07173 -14.92001 -14.87699 -14.81251 -14.73889 -14.39437 -13.95206 -13.82189 -13.62248 -13.32936 -13.16188 -13.11146 -12.99045 -12.85368 -12.56519 -12.49938 -12.28458 -12.21805 -12.15814 -12.10799 -11.91401 -11.88676 -11.78472 -11.73755 -11.71067 -11.56037 -11.54205 -11.02457 -11.01549 -10.95890 -10.75049 -9.80194 -9.32168 -8.06203 -5.38496 1.33133 1.35131 1.35916 1.41388 1.78479 2.43364 3.16057 3.18980 3.25549 3.27051 3.30730 3.50066 3.51217 3.56141 3.59552 3.76343 3.88931 4.04174 4.18358 4.25450 4.26574 4.30046 4.44083 4.49498 4.52291 4.58533 4.62802 4.64325 4.76608 4.79110 4.81055 4.83523 4.84565 4.86627 4.92769 4.94128 4.97369 5.01943 5.04079 5.07571 5.14969 5.15096 5.17560 5.21454 5.22605 5.27925 5.34612 5.50402 5.51852 5.54675 5.57956 5.73663 6.18403 6.46139 7.01593 7.04513 7.81634 7.98106 9.15227 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002507 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.896989 B =11165.942864 C =11869.954489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.104 0.896 4 C 0.104 3.896 5 N -0.612 5.612 6 C 0.580 3.420 7 O -0.593 6.593 8 C -0.182 4.182 9 C -0.091 4.091 10 C -0.077 4.077 11 C -0.004 4.004 12 C -0.142 4.142 13 C -0.139 4.139 14 C -0.141 4.141 15 C -0.100 4.100 16 C -0.085 4.085 17 C 0.110 3.890 18 C -0.096 4.096 19 H 0.073 0.927 20 C 0.167 3.833 21 N -0.762 5.762 22 C -0.229 4.229 23 H 0.064 0.936 24 C -0.060 4.060 25 N -0.980 5.980 26 Si 0.946 3.054 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.259 1.259 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.077 0.923 52 H 0.034 0.966 53 H 0.038 0.962 54 H 0.362 0.638 55 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -4.346 -35.440 37.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.122 0.878 4 C -0.017 4.017 5 N -0.343 5.343 6 C 0.370 3.630 7 O -0.474 6.474 8 C -0.185 4.185 9 C -0.128 4.128 10 C -0.077 4.077 11 C -0.004 4.004 12 C -0.199 4.199 13 C -0.196 4.196 14 C -0.199 4.199 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.013 4.013 18 C -0.116 4.116 19 H 0.092 0.908 20 C 0.041 3.959 21 N -0.407 5.407 22 C -0.360 4.360 23 H 0.082 0.918 24 C -0.252 4.252 25 N -0.631 5.631 26 Si 0.774 3.226 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.184 1.184 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.090 0.910 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.052 0.948 53 H 0.056 0.944 54 H 0.194 0.806 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.212 -4.683 -35.102 37.145 hybrid contribution 0.743 -1.349 1.485 2.140 sum -10.469 -6.032 -33.617 35.722 Atomic orbital electron populations 1.21829 0.92569 1.02007 1.03184 1.22099 0.97599 0.99921 0.91401 0.87780 1.22552 0.96299 0.86177 0.96697 1.48779 1.53242 1.15222 1.17064 1.19014 0.78521 0.79707 0.85731 1.90691 1.43006 1.44751 1.68946 1.23729 1.01812 1.02472 0.90447 1.24594 0.91549 1.02767 0.93893 1.24241 0.95184 0.94974 0.93262 1.19595 0.95417 0.96666 0.88682 1.21842 0.98817 0.96704 1.02514 1.21823 1.00008 0.96235 1.01513 1.21842 0.97404 1.01578 0.99040 1.23872 1.00279 0.95430 0.94147 1.24089 0.99967 0.98461 0.89733 1.22400 0.97692 0.98594 0.82615 1.22397 0.96398 0.97358 0.95454 0.90834 1.20795 0.97330 0.93122 0.84626 1.42828 1.80683 1.04831 1.12395 1.19057 1.33973 0.92261 0.90670 0.91777 1.25395 1.02051 1.01866 0.95878 1.69854 1.52726 1.36114 1.04438 0.85548 0.78383 0.81794 0.76875 1.21078 1.21843 1.18357 0.93108 0.92606 0.89634 0.89305 0.88263 0.91008 0.88163 0.92421 0.91217 0.93311 0.92088 0.91491 0.92126 0.93301 0.91215 0.92368 0.91417 0.91448 0.88107 0.91008 0.93119 0.90489 0.94810 0.94418 0.80569 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.90 71.98 0.64 -1.47 16 2 C -0.09 -1.68 3.17 -9.91 -0.03 -1.71 16 3 H 0.10 1.70 7.85 -2.38 -0.02 1.69 16 4 C 0.10 1.73 6.38 86.53 0.55 2.28 16 5 N -0.61 -16.00 3.29 -810.07 -2.67 -18.67 16 6 C 0.58 17.35 8.00 87.66 0.70 18.05 16 7 O -0.59 -23.97 17.31 -3.04 -0.05 -24.02 16 8 C -0.18 -3.69 2.60 -63.69 -0.17 -3.86 16 9 C -0.09 -1.26 7.49 31.90 0.24 -1.02 16 10 C -0.08 -0.94 1.67 -62.12 -0.10 -1.04 16 11 C 0.00 -0.03 1.02 -52.18 -0.05 -0.09 16 12 C -0.14 -1.25 8.47 71.98 0.61 -0.64 16 13 C -0.14 -0.88 8.47 71.98 0.61 -0.27 16 14 C -0.14 -1.23 8.47 71.98 0.61 -0.62 16 15 C -0.10 -1.87 7.78 30.61 0.24 -1.64 16 16 C -0.09 -1.16 7.80 31.08 0.24 -0.92 16 17 C 0.11 3.43 6.44 86.61 0.56 3.99 16 18 C -0.10 -2.73 2.61 -9.70 -0.03 -2.75 16 19 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 20 C 0.17 6.03 5.58 86.38 0.48 6.51 16 21 N -0.76 -36.13 5.32 -343.45 -1.83 -37.96 16 22 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 23 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 24 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 25 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 26 Si 0.95 47.89 27.73 68.60 1.90 49.80 16 27 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16 28 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 29 H -0.26 -12.12 6.52 99.48 0.65 -11.47 16 30 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.20 5.42 -2.39 -0.01 1.19 16 35 H 0.07 1.09 7.91 -2.39 -0.02 1.07 16 36 H 0.10 0.98 6.54 -2.38 -0.02 0.96 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 47 H 0.07 1.35 7.91 -2.39 -0.02 1.33 16 48 H 0.10 0.96 7.97 -2.39 -0.02 0.94 16 49 H 0.07 1.05 7.93 -2.38 -0.02 1.03 16 50 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 51 H 0.08 2.41 7.93 -2.39 -0.02 2.39 16 52 H 0.03 1.22 7.99 -2.39 -0.02 1.20 16 53 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 54 H 0.36 17.03 5.53 -92.71 -0.51 16.52 16 55 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -76.70 426.16 4.37 -72.33 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.27 Total: 22.72 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.45 Total: -0.65 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.19 Total: -120.18 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.90 Total: 49.80 kcal Total: -76.70 4.37 -72.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107054299.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.650 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds