Wall clock time and date at job start Tue Mar 31 2020 18:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47147 * 2 1 4 4 N 1.30833 * 125.89818 * 90.02174 * 3 2 1 5 5 N 1.40080 * 108.20556 * 180.02562 * 4 3 2 6 6 C 1.46500 * 126.03902 * 180.02562 * 5 4 3 7 7 C 1.34947 * 107.92848 * 359.97438 * 5 4 3 8 8 C 1.50700 * 126.13027 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47158 * 90.02628 * 8 7 5 10 10 C 1.35324 * 107.74064 * 0.22974 * 7 5 4 11 11 C 1.50697 * 126.03567 * 179.77235 * 10 7 5 12 12 N 1.46897 * 109.47237 * 90.00051 * 11 10 7 13 13 C 1.46901 * 111.00345 * 45.69577 * 12 11 10 14 14 C 1.53236 * 109.33891 * 187.25781 * 13 12 11 15 15 H 1.08997 * 109.63613 * 65.87703 * 14 13 12 16 16 C 1.53002 * 109.62518 * 186.46103 * 14 13 12 17 17 N 1.47080 * 108.52044 * 306.16200 * 14 13 12 18 18 C 1.36935 * 120.88454 * 231.20858 * 17 14 13 19 19 H 1.07999 * 119.99965 * 126.48045 * 18 17 14 20 20 C 1.38814 * 119.99858 * 306.47900 * 18 17 14 21 21 N 1.31614 * 120.00469 * 337.99539 * 20 18 17 22 22 Si 1.86802 * 119.99762 * 157.99530 * 20 18 17 23 23 H 1.48501 * 109.46868 * 60.00037 * 22 20 18 24 24 H 1.48496 * 109.47018 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47148 * 300.00286 * 22 20 18 26 26 C 1.47082 * 118.23206 * 51.19288 * 17 14 13 27 27 H 1.09000 * 109.79122 * 68.62011 * 26 17 14 28 28 C 1.53001 * 109.62660 * 189.10151 * 26 17 14 29 29 C 1.46903 * 111.00090 * 169.99840 * 12 11 10 30 30 H 1.08996 * 109.47430 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47259 * 60.00088 * 1 2 3 32 32 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47430 * 239.99922 * 2 1 3 34 34 H 1.08997 * 109.46782 * 119.99894 * 2 1 3 35 35 H 1.08999 * 109.47439 * 269.97538 * 6 5 4 36 36 H 1.09003 * 109.47285 * 29.97206 * 6 5 4 37 37 H 1.09001 * 109.47232 * 149.97445 * 6 5 4 38 38 H 1.08998 * 109.46870 * 330.02616 * 8 7 5 39 39 H 1.09003 * 109.47101 * 210.02532 * 8 7 5 40 40 H 1.08997 * 109.47285 * 179.97438 * 9 8 7 41 41 H 1.09003 * 109.47037 * 299.99944 * 9 8 7 42 42 H 1.09000 * 109.47090 * 59.99692 * 9 8 7 43 43 H 1.09004 * 109.47036 * 209.99774 * 11 10 7 44 44 H 1.08997 * 109.47191 * 329.99693 * 11 10 7 45 45 H 1.09001 * 109.48962 * 307.21616 * 13 12 11 46 46 H 1.08993 * 109.49133 * 67.29277 * 13 12 11 47 47 H 1.09002 * 109.47256 * 186.88765 * 16 14 13 48 48 H 1.09007 * 109.46875 * 306.88174 * 16 14 13 49 49 H 1.08993 * 109.47670 * 66.88381 * 16 14 13 50 50 H 0.96997 * 120.00345 * 185.05249 * 21 20 18 51 51 H 1.08997 * 109.47506 * 179.02703 * 28 26 17 52 52 H 1.09000 * 109.47203 * 299.02790 * 28 26 17 53 53 H 1.09001 * 109.47357 * 59.02774 * 28 26 17 54 54 H 1.09003 * 109.48881 * 292.70475 * 29 12 11 55 55 H 1.08996 * 109.49093 * 52.78223 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1439 1.0598 5 7 2.7326 3.4024 0.6341 6 6 3.1269 4.5158 1.5008 7 6 2.7341 3.4077 -0.7153 8 6 3.1398 4.5592 -1.5989 9 6 4.6374 4.4689 -1.8988 10 6 2.3007 2.1957 -1.1330 11 6 2.1386 1.7576 -2.5657 12 7 3.3906 1.1505 -3.0368 13 6 3.9254 0.2090 -2.0441 14 6 5.3140 -0.2626 -2.4886 15 1 6.0085 0.5772 -2.4726 16 6 5.8090 -1.3622 -1.5469 17 7 5.2115 -0.7931 -3.8566 18 6 5.7078 -2.0303 -4.1698 19 1 5.0737 -2.7607 -4.6502 20 6 7.0259 -2.3456 -3.8699 21 7 7.9099 -1.3855 -3.6992 22 14 7.5452 -4.1327 -3.7084 23 1 7.2895 -4.8400 -4.9889 24 1 8.9934 -4.2002 -3.3868 25 1 6.7656 -4.7785 -2.6220 26 6 4.5614 0.0406 -4.8792 27 1 5.1824 0.9097 -5.0963 28 6 4.3581 -0.7774 -6.1561 29 6 3.2024 0.5004 -4.3407 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2559 5.1345 1.7165 36 1 3.5341 4.1241 2.4329 37 1 3.8842 5.1172 0.9978 38 1 2.9271 5.4996 -1.0906 39 1 2.5791 4.5158 -2.5326 40 1 4.9308 5.3015 -2.5382 41 1 5.1982 4.5123 -0.9650 42 1 4.8502 3.5284 -2.4070 43 1 1.3326 1.0268 -2.6332 44 1 1.8982 2.6217 -3.1850 45 1 4.0022 0.7052 -1.0767 46 1 3.2589 -0.6494 -1.9611 47 1 6.8425 -1.6100 -1.7892 48 1 5.7516 -1.0111 -0.5165 49 1 5.1858 -2.2487 -1.6640 50 1 8.8446 -1.6055 -3.5624 51 1 3.8607 -0.1627 -6.9062 52 1 5.3261 -1.1031 -6.5369 53 1 3.7426 -1.6495 -5.9348 54 1 2.5460 -0.3622 -4.2256 55 1 2.7550 1.2079 -5.0387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119516243.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:29 Heat of formation + Delta-G solvation = 79.725583 kcal Electronic energy + Delta-G solvation = -31956.319405 eV Core-core repulsion = 28222.707683 eV Total energy + Delta-G solvation = -3733.611722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.48050 -39.88774 -36.79660 -35.94602 -34.66782 -34.02202 -33.27915 -32.61166 -30.61072 -29.31761 -28.21921 -27.49630 -26.81801 -25.85114 -24.47304 -24.12857 -22.84652 -21.94806 -20.83626 -20.27795 -19.97017 -18.08379 -17.38921 -17.12860 -16.58260 -16.14800 -16.08159 -15.97952 -15.72553 -15.25268 -15.04336 -14.94657 -14.76400 -14.63582 -14.30510 -13.86150 -13.83525 -13.55355 -13.45759 -13.30327 -13.27048 -13.16375 -12.96790 -12.72276 -12.62981 -12.55828 -12.47852 -12.31384 -12.30034 -12.19440 -12.08614 -11.98778 -11.86387 -11.80923 -11.49428 -11.43854 -11.23391 -11.05646 -10.15454 -9.96077 -9.33759 -8.88659 -8.24948 -7.66853 -5.50168 0.94835 1.43871 1.47535 1.52315 1.67439 1.73804 2.50004 3.26137 3.30548 3.55123 3.65286 3.66950 4.00183 4.17085 4.19327 4.27965 4.32484 4.38270 4.39476 4.43242 4.46836 4.49065 4.58261 4.62887 4.65334 4.68499 4.71228 4.75367 4.80884 4.84537 4.90659 4.91404 4.94453 4.96915 5.01702 5.02321 5.05226 5.07608 5.11558 5.25260 5.29273 5.32824 5.43039 5.53260 5.55184 5.61017 5.70391 5.74800 5.78239 5.85241 6.21810 6.36635 6.45203 6.63514 6.82863 7.30764 7.89375 8.64507 9.19273 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.003942 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.769481 B = 7100.473054 C = 7311.364653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C 0.082 3.918 4 N -0.334 5.334 5 N -0.380 5.380 6 C 0.094 3.906 7 C 0.106 3.894 8 C -0.049 4.049 9 C -0.141 4.141 10 C -0.246 4.246 11 C 0.141 3.859 12 N -0.532 5.532 13 C 0.076 3.924 14 C 0.200 3.800 15 H -0.009 1.009 16 C -0.129 4.129 17 N -0.591 5.591 18 C -0.265 4.265 19 H 0.044 0.956 20 C 0.003 3.997 21 N -0.909 5.909 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.165 3.835 27 H 0.005 0.995 28 C -0.117 4.117 29 C 0.061 3.939 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.055 0.945 48 H 0.037 0.963 49 H 0.042 0.958 50 H 0.251 0.749 51 H 0.071 0.929 52 H 0.035 0.965 53 H 0.045 0.955 54 H 0.023 0.977 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 12.874 5.696 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.084 4.084 4 N -0.156 5.156 5 N -0.162 5.162 6 C -0.046 4.046 7 C -0.023 4.023 8 C -0.088 4.088 9 C -0.199 4.199 10 C -0.257 4.257 11 C 0.013 3.987 12 N -0.256 5.256 13 C -0.054 4.054 14 C 0.094 3.906 15 H 0.009 0.991 16 C -0.187 4.187 17 N -0.317 5.317 18 C -0.396 4.396 19 H 0.061 0.939 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.759 3.241 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.059 3.941 27 H 0.023 0.977 28 C -0.175 4.175 29 C -0.069 4.069 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.090 0.910 52 H 0.054 0.946 53 H 0.064 0.936 54 H 0.041 0.959 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.435 13.432 7.121 20.289 hybrid contribution 0.551 -1.748 -0.382 1.872 sum -12.884 11.685 6.739 18.653 Atomic orbital electron populations 1.21605 0.92727 1.02719 1.01901 1.20158 0.97440 0.88608 1.03029 1.22321 0.98437 0.97053 0.90582 1.77188 1.23207 0.91937 1.23270 1.48558 1.51632 1.11303 1.04719 1.22105 1.02215 0.85545 0.94703 1.21249 0.98499 0.98020 0.84521 1.20248 0.97233 0.93259 0.98070 1.21653 0.94295 1.02678 1.01297 1.19640 1.15759 0.94638 0.95697 1.20311 0.89773 0.98416 0.90211 1.61978 1.27671 1.33308 1.02658 1.22431 0.95820 0.92648 0.94465 1.20174 0.92266 0.92938 0.85210 0.99112 1.21760 1.02372 0.98398 0.96164 1.44246 1.68118 1.15998 1.03290 1.18672 0.92160 0.89857 1.38866 0.93859 1.26043 0.96245 0.99054 0.98329 1.70179 1.01066 1.32692 1.51130 0.85946 0.76589 0.82841 0.78755 1.19789 1.22062 1.20094 1.20679 0.91477 0.92179 0.89729 0.97739 1.21557 1.00482 0.99315 0.96141 1.22506 0.96963 0.96543 0.90844 0.92896 0.92425 0.90618 0.90552 0.91052 0.89113 0.89476 0.87700 0.88555 0.88439 0.90279 0.93726 0.93723 0.94700 0.89188 0.92355 0.96119 0.92593 0.94374 0.93872 0.94020 0.91047 0.94612 0.93573 0.95880 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.05 -1.46 5.91 29.85 0.18 -1.28 16 3 C 0.08 2.49 5.09 43.10 0.22 2.71 16 4 N -0.33 -10.46 12.58 -47.39 -0.60 -11.06 16 5 N -0.38 -9.78 4.01 -356.02 -1.43 -11.21 16 6 C 0.09 1.49 11.09 127.77 1.42 2.91 16 7 C 0.11 2.70 6.19 41.41 0.26 2.96 16 8 C -0.05 -0.92 5.74 29.85 0.17 -0.75 16 9 C -0.14 -3.12 9.89 71.98 0.71 -2.41 16 10 C -0.25 -7.09 4.20 -20.14 -0.08 -7.18 16 11 C 0.14 3.93 5.22 85.56 0.45 4.38 16 12 N -0.53 -18.37 4.77 -899.84 -4.29 -22.67 16 13 C 0.08 3.00 3.53 86.38 0.30 3.30 16 14 C 0.20 9.67 3.21 44.96 0.14 9.81 16 15 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 16 C -0.13 -6.21 7.98 71.98 0.57 -5.63 16 17 N -0.59 -29.56 2.81 -650.65 -1.83 -31.39 16 18 C -0.27 -14.26 6.71 84.03 0.56 -13.70 16 19 H 0.04 2.37 7.19 -2.91 -0.02 2.34 16 20 C 0.00 0.15 3.21 84.86 0.27 0.43 16 21 N -0.91 -53.44 12.12 21.65 0.26 -53.18 16 22 Si 0.93 43.95 29.61 68.60 2.03 45.98 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C 0.17 7.09 3.66 44.96 0.16 7.25 16 27 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 28 C -0.12 -4.52 8.19 71.98 0.59 -3.93 16 29 C 0.06 2.10 4.87 86.38 0.42 2.52 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.27 5.15 -2.39 -0.01 2.26 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.22 7.66 -2.39 -0.02 1.20 16 38 H 0.10 1.24 7.72 -2.39 -0.02 1.22 16 39 H 0.10 1.69 7.14 -2.39 -0.02 1.67 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.03 0.96 7.88 -2.39 -0.02 0.94 16 44 H 0.09 2.16 7.14 -2.39 -0.02 2.14 16 45 H 0.06 2.36 5.53 -2.39 -0.01 2.35 16 46 H 0.02 0.84 6.18 -2.39 -0.01 0.83 16 47 H 0.06 3.00 5.15 -2.39 -0.01 2.99 16 48 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.04 2.07 7.69 -2.39 -0.02 2.05 16 50 H 0.25 14.35 8.32 -92.71 -0.77 13.58 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.03 1.56 7.69 -2.39 -0.02 1.54 16 53 H 0.05 1.77 7.57 -2.39 -0.02 1.76 16 54 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 55 H 0.09 2.55 8.11 -2.39 -0.02 2.53 16 Total: -1.00 -67.97 411.92 2.05 -65.93 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.84 Total: 18.36 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 7.06 Total: -0.76 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -7.88 Total: -129.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.97 2.05 -65.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119516243.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.651 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds