Wall clock time and date at job start Tue Mar 31 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99689 * 2 1 4 4 H 1.08998 * 110.35079 * 332.13827 * 3 2 1 5 5 C 1.54589 * 110.31070 * 94.28627 * 3 2 1 6 6 C 1.54933 * 102.92498 * 140.87387 * 5 3 2 7 7 N 1.48535 * 103.22715 * 322.58016 * 6 5 3 8 8 C 1.38574 * 111.00410 * 159.72016 * 7 6 5 9 9 N 1.31212 * 126.47566 * 242.61139 * 8 7 6 10 10 N 1.28534 * 109.86220 * 179.72870 * 9 8 7 11 11 C 1.30292 * 110.05143 * 0.44827 * 10 9 8 12 12 C 1.50701 * 126.34877 * 179.82413 * 11 10 9 13 13 C 1.53000 * 109.46983 * 269.68737 * 12 11 10 14 14 C 1.53004 * 109.46988 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00516 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99783 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99956 * 180.27458 * 17 15 14 20 20 H 1.48503 * 109.47407 * 269.72718 * 19 17 15 21 21 H 1.48505 * 109.47281 * 29.72474 * 19 17 15 22 22 H 1.48501 * 109.47274 * 149.72572 * 19 17 15 23 23 N 1.36452 * 126.46932 * 62.60654 * 8 7 6 24 24 C 1.46502 * 127.13845 * 359.97438 * 23 8 7 25 25 C 1.52999 * 109.47114 * 269.97348 * 24 23 8 26 26 C 1.53000 * 117.50311 * 243.61883 * 25 24 23 27 27 C 1.53001 * 60.00061 * 252.51705 * 26 25 24 28 28 C 1.47902 * 105.81693 * 39.20916 * 7 6 5 29 29 H 1.08997 * 109.47077 * 299.99896 * 1 2 3 30 30 H 1.09000 * 109.47059 * 60.00686 * 1 2 3 31 31 H 1.09001 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.09005 * 110.71997 * 259.23089 * 5 3 2 33 33 H 1.08998 * 110.72726 * 22.51114 * 5 3 2 34 34 H 1.09003 * 110.67142 * 204.15076 * 6 5 3 35 35 H 1.08993 * 110.67400 * 81.01816 * 6 5 3 36 36 H 1.08998 * 109.47477 * 149.68775 * 12 11 10 37 37 H 1.08997 * 109.46721 * 29.68991 * 12 11 10 38 38 H 1.09006 * 109.46826 * 60.00014 * 13 12 11 39 39 H 1.08997 * 109.47123 * 299.99949 * 13 12 11 40 40 H 1.09001 * 109.46361 * 60.00532 * 14 13 12 41 41 H 1.08997 * 109.46991 * 300.00423 * 14 13 12 42 42 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.46972 * 29.97903 * 24 23 8 44 44 H 1.09004 * 109.46631 * 149.97877 * 24 23 8 45 45 H 1.08998 * 115.54740 * 29.33678 * 25 24 23 46 46 H 1.09007 * 117.49153 * 0.02562 * 26 25 24 47 47 H 1.08994 * 117.49526 * 145.01900 * 26 25 24 48 48 H 1.09000 * 117.49399 * 252.50948 * 27 26 25 49 49 H 1.08995 * 117.52031 * 107.48663 * 27 26 25 50 50 H 1.09000 * 109.91968 * 94.02187 * 28 7 6 51 51 H 1.08998 * 109.91765 * 215.31820 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0192 -0.4776 5 6 2.3274 1.7516 1.4457 6 6 3.6857 2.4812 1.2931 7 7 4.3955 1.6680 0.2728 8 6 5.4155 2.3950 -0.3200 9 7 5.5043 2.7240 -1.5871 10 7 6.5772 3.4029 -1.7878 11 6 7.2358 3.5379 -0.6718 12 6 8.5436 4.2639 -0.4886 13 6 9.7026 3.2863 -0.6940 14 6 11.0305 4.0235 -0.5087 15 6 12.1720 3.0608 -0.7116 16 1 11.9706 2.0265 -0.9486 17 6 13.4736 3.5002 -0.5937 18 7 13.7188 4.7593 -0.3036 19 14 14.8887 2.3087 -0.8527 20 1 15.2513 1.6814 0.4435 21 1 14.4784 1.2546 -1.8150 22 1 16.0613 3.0426 -1.3927 23 7 6.5172 2.9038 0.3038 24 6 6.8591 2.7942 1.7241 25 6 6.2625 3.9799 2.4852 26 6 7.2362 4.9515 3.1552 27 6 6.4092 3.9875 4.0082 28 6 3.3703 1.2851 -0.7221 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.5622 2.4344 1.8153 33 1 2.4253 0.8879 2.1033 34 1 4.2324 2.4778 2.2361 35 1 3.5370 3.5006 0.9372 36 1 8.5916 4.6777 0.5186 37 1 8.6159 5.0714 -1.2170 38 1 9.6546 2.8725 -1.7013 39 1 9.6302 2.4788 0.0345 40 1 11.0785 4.4376 0.4985 41 1 11.1025 4.8309 -1.2374 42 1 14.6345 5.0683 -0.2203 43 1 6.4546 1.8647 2.1245 44 1 7.9432 2.7977 1.8382 45 1 5.3459 4.3945 2.0658 46 1 8.3019 4.7462 3.0533 47 1 6.9604 6.0057 3.1763 48 1 5.5892 4.4077 4.5906 49 1 6.9303 3.1478 4.4679 50 1 3.3649 2.0007 -1.5442 51 1 3.5752 0.2833 -1.0997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123399444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:21 Heat of formation + Delta-G solvation = 59.896187 kcal Electronic energy + Delta-G solvation = -29391.846568 eV Core-core repulsion = 25521.541884 eV Total energy + Delta-G solvation = -3870.304684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.90120 -39.76765 -38.02070 -37.28497 -34.99150 -34.16793 -32.65843 -31.66045 -29.34467 -29.18807 -27.69478 -26.78122 -26.65187 -23.75381 -23.07380 -22.67425 -21.90057 -21.59906 -20.52145 -20.24891 -19.94559 -17.88430 -17.36761 -16.62360 -16.27249 -16.21136 -15.43517 -15.36148 -15.12648 -14.95268 -14.57001 -14.49063 -14.13390 -13.84443 -13.67523 -13.28723 -13.04726 -12.76485 -12.48219 -12.33998 -12.17947 -12.07605 -11.93273 -11.83162 -11.74298 -11.52077 -11.33523 -11.11957 -10.86611 -10.80865 -10.78038 -10.61169 -10.48650 -10.26962 -10.05045 -10.01776 -9.77310 -9.65963 -9.39820 -9.11861 -8.35731 -8.18812 -6.01037 -4.03006 1.85351 2.24768 3.00566 3.29061 3.31915 3.38588 3.42049 3.43028 3.56464 4.06310 4.15741 4.32976 4.45404 4.49409 4.59073 4.61275 4.70251 4.75450 4.83916 4.86981 4.93449 4.94619 5.04884 5.06572 5.13714 5.28345 5.28949 5.31537 5.35162 5.37855 5.40196 5.49688 5.58184 5.65278 5.68556 5.77921 5.85907 5.89231 5.94653 6.06413 6.12063 6.32383 6.61807 6.64139 6.77450 6.79412 7.04000 7.20356 7.64683 7.77753 7.98346 8.41095 8.95888 9.03478 9.61155 11.10133 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.002499 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.570989 B =11199.975865 C =12115.832422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.144 4.144 6 C 0.037 3.963 7 N -0.429 5.429 8 C 0.334 3.666 9 N -0.323 5.323 10 N -0.290 5.290 11 C 0.208 3.792 12 C -0.035 4.035 13 C -0.103 4.103 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.286 1.286 23 N -0.472 5.472 24 C 0.138 3.862 25 C -0.182 4.182 26 C -0.170 4.170 27 C -0.167 4.167 28 C 0.050 3.950 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.016 0.984 41 H 0.020 0.980 42 H 0.260 0.740 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.912 -3.155 9.447 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.182 4.182 6 C -0.090 4.090 7 N -0.153 5.153 8 C -0.022 4.022 9 N -0.167 5.167 10 N -0.128 5.128 11 C -0.060 4.060 12 C -0.075 4.075 13 C -0.142 4.142 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.198 1.198 22 H -0.212 1.212 23 N -0.166 5.166 24 C 0.015 3.985 25 C -0.201 4.201 26 C -0.207 4.207 27 C -0.204 4.204 28 C -0.077 4.077 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.106 0.894 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.785 -3.554 8.225 28.244 hybrid contribution 0.652 0.057 0.999 1.194 sum -26.133 -3.497 9.224 27.933 Atomic orbital electron populations 1.22813 0.80966 1.02955 0.99980 1.87993 1.19671 1.26824 1.94856 1.22996 0.94546 0.85191 0.95236 0.90704 1.23048 0.96045 1.01285 0.97830 1.23470 0.94255 0.95280 0.96024 1.61463 1.07919 1.33377 1.12541 1.22579 0.90824 0.98856 0.89989 1.74463 1.15245 1.15604 1.11363 1.74013 1.01981 1.15374 1.21435 1.25273 0.97991 0.98792 0.83911 1.20352 0.85695 0.98133 1.03327 1.21661 0.94382 0.97010 1.01117 1.19091 0.89403 0.95641 0.97197 1.21225 0.90964 0.95900 1.47728 0.92733 1.25009 0.98951 0.95132 0.95311 1.69959 1.19997 1.14563 1.48912 0.86608 0.81985 0.81133 0.78382 1.20724 1.19849 1.21190 1.46124 1.17714 1.42864 1.09904 1.21510 1.02404 0.98543 0.76084 1.22668 1.02043 1.00068 0.95336 1.23162 0.98092 0.96667 1.02804 1.22969 1.03238 1.02713 0.91499 1.22915 0.87167 1.04325 0.93275 0.94048 0.93870 0.89463 0.90161 0.88962 0.88522 0.92629 0.90349 0.88557 0.92420 0.93656 0.96547 0.96165 0.93010 0.88120 0.87672 0.87578 0.87592 0.88411 0.88420 0.88166 0.89421 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.38 -3.44 10.29 -35.23 -0.36 -3.80 16 3 C 0.08 0.66 3.47 -25.37 -0.09 0.57 16 4 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 5 C -0.14 -1.02 6.80 -24.88 -0.17 -1.19 16 6 C 0.04 0.32 5.07 -1.90 -0.01 0.31 16 7 N -0.43 -5.15 5.32 -170.55 -0.91 -6.05 16 8 C 0.33 5.03 7.04 -318.89 -2.24 2.78 16 9 N -0.32 -5.79 10.70 30.31 0.32 -5.47 16 10 N -0.29 -5.61 12.18 32.99 0.40 -5.21 16 11 C 0.21 3.56 7.32 -154.01 -1.13 2.43 16 12 C -0.04 -0.60 5.43 -27.88 -0.15 -0.75 16 13 C -0.10 -2.10 5.14 -26.73 -0.14 -2.24 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 N -0.47 -6.82 2.81 -114.09 -0.32 -7.14 16 24 C 0.14 1.52 5.38 -4.04 -0.02 1.50 16 25 C -0.18 -1.65 4.64 -90.62 -0.42 -2.07 16 26 C -0.17 -1.53 10.18 -26.73 -0.27 -1.80 16 27 C -0.17 -1.21 10.25 -26.73 -0.27 -1.48 16 28 C 0.05 0.56 6.29 -2.75 -0.02 0.54 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 8.11 -51.93 -0.42 -0.21 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.10 0.76 6.15 -51.93 -0.32 0.44 16 35 H 0.06 0.51 7.83 -51.93 -0.41 0.11 16 36 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 37 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16 44 H 0.11 1.21 7.62 -51.93 -0.40 0.82 16 45 H 0.11 1.00 7.05 -51.93 -0.37 0.64 16 46 H 0.11 1.05 8.03 -51.93 -0.42 0.63 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.07 6.84 -51.93 -0.36 0.72 16 51 H 0.10 1.23 7.96 -51.93 -0.41 0.81 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -33.39 409.80 -12.29 -45.69 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.94 Total: -2.03 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -4.39 Total: -13.06 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.23 Total: -49.65 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.36 Total: -3.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.39 -12.29 -45.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123399444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.583 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds