Wall clock time and date at job start Tue Mar 31 2020 18:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99689 * 2 1 4 4 H 1.08998 * 110.35079 * 332.13827 * 3 2 1 5 5 C 1.54589 * 110.31070 * 94.28627 * 3 2 1 6 6 C 1.54933 * 102.92498 * 140.87387 * 5 3 2 7 7 N 1.48535 * 103.22715 * 322.58016 * 6 5 3 8 8 C 1.38574 * 111.00410 * 159.72016 * 7 6 5 9 9 N 1.31212 * 126.47566 * 242.61139 * 8 7 6 10 10 N 1.28534 * 109.86220 * 179.72870 * 9 8 7 11 11 C 1.30292 * 110.05143 * 0.44827 * 10 9 8 12 12 C 1.50701 * 126.34877 * 179.82413 * 11 10 9 13 13 C 1.53000 * 109.46983 * 269.68737 * 12 11 10 14 14 C 1.53004 * 109.46988 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00516 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99783 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99956 * 180.27458 * 17 15 14 20 20 H 1.48503 * 109.47407 * 269.72718 * 19 17 15 21 21 H 1.48505 * 109.47281 * 29.72474 * 19 17 15 22 22 H 1.48501 * 109.47274 * 149.72572 * 19 17 15 23 23 N 1.36452 * 126.46932 * 62.60654 * 8 7 6 24 24 C 1.46502 * 127.13845 * 359.97438 * 23 8 7 25 25 C 1.52999 * 109.47114 * 269.97348 * 24 23 8 26 26 C 1.53000 * 117.50311 * 243.61883 * 25 24 23 27 27 C 1.53001 * 60.00061 * 252.51705 * 26 25 24 28 28 C 1.47902 * 105.81693 * 39.20916 * 7 6 5 29 29 H 1.08997 * 109.47077 * 299.99896 * 1 2 3 30 30 H 1.09000 * 109.47059 * 60.00686 * 1 2 3 31 31 H 1.09001 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.09005 * 110.71997 * 259.23089 * 5 3 2 33 33 H 1.08998 * 110.72726 * 22.51114 * 5 3 2 34 34 H 1.09003 * 110.67142 * 204.15076 * 6 5 3 35 35 H 1.08993 * 110.67400 * 81.01816 * 6 5 3 36 36 H 1.08998 * 109.47477 * 149.68775 * 12 11 10 37 37 H 1.08997 * 109.46721 * 29.68991 * 12 11 10 38 38 H 1.09006 * 109.46826 * 60.00014 * 13 12 11 39 39 H 1.08997 * 109.47123 * 299.99949 * 13 12 11 40 40 H 1.09001 * 109.46361 * 60.00532 * 14 13 12 41 41 H 1.08997 * 109.46991 * 300.00423 * 14 13 12 42 42 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.46972 * 29.97903 * 24 23 8 44 44 H 1.09004 * 109.46631 * 149.97877 * 24 23 8 45 45 H 1.08998 * 115.54740 * 29.33678 * 25 24 23 46 46 H 1.09007 * 117.49153 * 0.02562 * 26 25 24 47 47 H 1.08994 * 117.49526 * 145.01900 * 26 25 24 48 48 H 1.09000 * 117.49399 * 252.50948 * 27 26 25 49 49 H 1.08995 * 117.52031 * 107.48663 * 27 26 25 50 50 H 1.09000 * 109.91968 * 94.02187 * 28 7 6 51 51 H 1.08998 * 109.91765 * 215.31820 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3390 2.0192 -0.4776 5 6 2.3274 1.7516 1.4457 6 6 3.6857 2.4812 1.2931 7 7 4.3955 1.6680 0.2728 8 6 5.4155 2.3950 -0.3200 9 7 5.5043 2.7240 -1.5871 10 7 6.5772 3.4029 -1.7878 11 6 7.2358 3.5379 -0.6718 12 6 8.5436 4.2639 -0.4886 13 6 9.7026 3.2863 -0.6940 14 6 11.0305 4.0235 -0.5087 15 6 12.1720 3.0608 -0.7116 16 1 11.9706 2.0265 -0.9486 17 6 13.4736 3.5002 -0.5937 18 7 13.7188 4.7593 -0.3036 19 14 14.8887 2.3087 -0.8527 20 1 15.2513 1.6814 0.4435 21 1 14.4784 1.2546 -1.8150 22 1 16.0613 3.0426 -1.3927 23 7 6.5172 2.9038 0.3038 24 6 6.8591 2.7942 1.7241 25 6 6.2625 3.9799 2.4852 26 6 7.2362 4.9515 3.1552 27 6 6.4092 3.9875 4.0082 28 6 3.3703 1.2851 -0.7221 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.5622 2.4344 1.8153 33 1 2.4253 0.8879 2.1033 34 1 4.2324 2.4778 2.2361 35 1 3.5370 3.5006 0.9372 36 1 8.5916 4.6777 0.5186 37 1 8.6159 5.0714 -1.2170 38 1 9.6546 2.8725 -1.7013 39 1 9.6302 2.4788 0.0345 40 1 11.0785 4.4376 0.4985 41 1 11.1025 4.8309 -1.2374 42 1 14.6345 5.0683 -0.2203 43 1 6.4546 1.8647 2.1245 44 1 7.9432 2.7977 1.8382 45 1 5.3459 4.3945 2.0658 46 1 8.3019 4.7462 3.0533 47 1 6.9604 6.0057 3.1763 48 1 5.5892 4.4077 4.5906 49 1 6.9303 3.1478 4.4679 50 1 3.3649 2.0007 -1.5442 51 1 3.5752 0.2833 -1.0997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123399444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:20 Heat of formation + Delta-G solvation = 42.384486 kcal Electronic energy + Delta-G solvation = -29392.605933 eV Core-core repulsion = 25521.541884 eV Total energy + Delta-G solvation = -3871.064048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.12832 -40.54087 -38.78811 -38.01877 -36.64896 -35.36442 -34.44348 -32.80774 -30.69639 -30.04440 -28.64593 -28.40118 -27.16757 -25.59230 -23.97644 -23.32221 -22.80021 -22.65168 -22.00859 -21.28193 -21.07413 -18.86604 -18.42334 -18.04741 -17.58446 -17.27051 -16.55699 -16.12487 -16.07124 -16.01399 -15.75374 -15.54688 -15.32473 -15.11982 -14.62950 -14.35033 -14.11669 -13.85160 -13.73904 -13.46876 -13.27692 -13.15280 -12.96850 -12.86022 -12.68960 -12.64567 -12.50030 -12.43267 -12.37579 -12.31106 -11.77354 -11.71007 -11.56393 -11.55184 -11.39163 -11.23537 -11.12737 -11.01720 -10.73724 -10.57870 -10.53806 -9.38997 -8.19417 -6.29246 0.67394 1.14072 1.39645 1.41114 1.52029 1.71247 2.41294 2.52407 2.74370 2.77665 3.13905 3.28803 3.35285 3.49308 3.60893 3.68168 3.84589 3.95086 4.01509 4.03246 4.10138 4.13731 4.21795 4.31693 4.32285 4.34258 4.50544 4.53886 4.57199 4.58563 4.63582 4.71802 4.76467 4.79341 4.81166 4.91314 4.96860 5.00282 5.02183 5.03819 5.07237 5.12265 5.17480 5.25334 5.39642 5.46309 5.51731 5.73759 5.85421 6.08329 6.24373 6.26174 6.85950 7.39225 7.67589 8.91804 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.002499 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.570989 B =11199.975865 C =12115.832422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.084 3.916 4 H 0.092 0.908 5 C -0.132 4.132 6 C 0.037 3.963 7 N -0.433 5.433 8 C 0.350 3.650 9 N -0.358 5.358 10 N -0.325 5.325 11 C 0.199 3.801 12 C -0.021 4.021 13 C -0.085 4.085 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.052 0.948 17 C 0.004 3.996 18 N -0.927 5.927 19 Si 0.959 3.041 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.281 1.281 23 N -0.467 5.467 24 C 0.133 3.867 25 C -0.184 4.184 26 C -0.185 4.185 27 C -0.141 4.141 28 C 0.048 3.952 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.007 0.993 41 H -0.003 1.003 42 H 0.264 0.736 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.072 0.928 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.493 -3.922 11.679 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.025 3.975 4 H 0.109 0.891 5 C -0.170 4.170 6 C -0.089 4.089 7 N -0.158 5.158 8 C -0.008 4.008 9 N -0.202 5.202 10 N -0.164 5.164 11 C -0.070 4.070 12 C -0.061 4.061 13 C -0.124 4.124 14 C -0.007 4.007 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.784 3.216 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.206 1.206 23 N -0.160 5.160 24 C 0.011 3.989 25 C -0.203 4.203 26 C -0.222 4.222 27 C -0.178 4.178 28 C -0.080 4.080 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.136 0.864 49 H 0.126 0.874 50 H 0.091 0.909 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.389 -4.330 10.481 30.570 hybrid contribution 1.075 0.248 0.332 1.152 sum -27.314 -4.082 10.813 29.659 Atomic orbital electron populations 1.23003 0.79217 1.03924 1.01097 1.87956 1.21621 1.27194 1.95031 1.22957 0.93089 0.85521 0.95899 0.89050 1.23038 0.95552 1.01595 0.96823 1.23609 0.95067 0.94944 0.95277 1.61581 1.07962 1.33237 1.12976 1.22896 0.91272 0.97237 0.89396 1.74384 1.15435 1.17121 1.13257 1.73913 1.02966 1.16532 1.22956 1.25037 0.98070 0.99530 0.84346 1.20103 0.84550 0.97007 1.04412 1.21354 0.93596 0.97307 1.00121 1.18958 0.91162 0.94852 0.95750 1.21634 0.92329 0.96346 1.47878 0.92939 1.25873 1.01727 0.96899 0.94898 1.70069 1.20804 1.16274 1.49585 0.85541 0.78496 0.78872 0.78714 1.19492 1.19461 1.20635 1.46241 1.17029 1.41989 1.10782 1.21776 1.02383 1.00318 0.74392 1.22527 1.01835 0.99354 0.96608 1.23186 0.97527 0.97268 1.04234 1.23080 1.02829 1.01869 0.90070 1.22902 0.88868 1.02866 0.93325 0.92455 0.93180 0.88696 0.87245 0.88936 0.87149 0.92789 0.88319 0.88940 0.94206 0.93124 0.97457 0.98490 0.92719 0.86690 0.88289 0.87623 0.88912 0.88032 0.86441 0.87360 0.90934 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.40 -6.66 10.29 -148.98 -1.53 -8.19 16 3 C 0.08 1.25 3.47 31.47 0.11 1.36 16 4 H 0.09 1.06 7.82 -2.39 -0.02 1.04 16 5 C -0.13 -1.46 6.80 31.80 0.22 -1.25 16 6 C 0.04 0.56 5.07 86.65 0.44 1.00 16 7 N -0.43 -9.99 5.32 -693.50 -3.69 -13.68 16 8 C 0.35 10.47 7.04 260.12 1.83 12.30 16 9 N -0.36 -13.20 10.70 -58.01 -0.62 -13.82 16 10 N -0.33 -12.99 12.18 -49.53 -0.60 -13.59 16 11 C 0.20 6.93 7.32 137.64 1.01 7.93 16 12 C -0.02 -0.73 5.43 29.85 0.16 -0.57 16 13 C -0.08 -3.56 5.14 30.60 0.16 -3.40 16 14 C 0.03 1.54 4.97 29.85 0.15 1.69 16 15 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.24 5.46 84.66 0.46 0.71 16 18 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 19 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 N -0.47 -13.31 2.81 -514.86 -1.45 -14.76 16 24 C 0.13 2.75 5.38 86.38 0.46 3.22 16 25 C -0.18 -2.96 4.64 -10.79 -0.05 -3.01 16 26 C -0.19 -3.03 10.18 30.59 0.31 -2.72 16 27 C -0.14 -1.61 10.25 30.60 0.31 -1.30 16 28 C 0.05 1.05 6.29 86.45 0.54 1.59 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.39 8.11 -2.39 -0.02 0.38 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.11 1.39 6.15 -2.39 -0.01 1.37 16 35 H 0.05 0.88 7.83 -2.39 -0.02 0.86 16 36 H 0.10 2.97 7.92 -2.39 -0.02 2.95 16 37 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.12 2.04 7.93 -2.39 -0.02 2.02 16 44 H 0.10 2.20 7.62 -2.38 -0.02 2.18 16 45 H 0.11 1.76 7.05 -2.39 -0.02 1.75 16 46 H 0.09 1.77 8.03 -2.38 -0.02 1.75 16 47 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.07 1.82 6.84 -2.39 -0.02 1.81 16 51 H 0.09 2.14 7.96 -2.39 -0.02 2.12 16 Total: -1.00 -73.60 409.80 2.89 -70.70 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.90 Total: 13.84 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 7.58 Total: -11.80 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -6.07 Total: -111.10 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -1.53 Total: -8.19 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.60 2.89 -70.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123399444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.086 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds