Wall clock time and date at job start Tue Mar 31 2020 18:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00111 * 2 1 4 4 C 1.53004 * 109.46959 * 293.95118 * 3 2 1 5 5 H 1.08997 * 109.86711 * 59.29765 * 4 3 2 6 6 C 1.54099 * 109.87796 * 180.30490 * 4 3 2 7 7 C 1.54812 * 104.18603 * 121.45491 * 6 4 3 8 8 C 1.54996 * 102.09432 * 20.87878 * 7 6 4 9 9 O 1.43750 * 109.87590 * 298.29208 * 4 3 2 10 10 C 1.38586 * 110.99910 * 123.95155 * 2 1 3 11 11 N 1.31217 * 126.47174 * 291.49997 * 10 2 1 12 12 N 1.28522 * 109.86104 * 179.82181 * 11 10 2 13 13 C 1.30301 * 110.05227 * 0.45324 * 12 11 10 14 14 C 1.50696 * 126.34516 * 179.76115 * 13 12 11 15 15 C 1.52999 * 109.47358 * 269.95470 * 14 13 12 16 16 C 1.50698 * 109.46983 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00312 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99716 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99718 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47434 * 89.99521 * 20 18 16 22 22 H 1.48497 * 109.46880 * 209.99485 * 20 18 16 23 23 H 1.48502 * 109.47082 * 329.99595 * 20 18 16 24 24 N 1.36446 * 126.47305 * 111.81466 * 10 2 1 25 25 C 1.46502 * 127.13898 * 0.02562 * 24 10 2 26 26 C 1.53005 * 109.46774 * 86.99464 * 25 24 10 27 27 C 1.52997 * 117.49747 * 243.62030 * 26 25 24 28 28 C 1.52999 * 60.00104 * 252.51261 * 27 26 25 29 29 H 1.09004 * 109.46769 * 65.62880 * 1 2 3 30 30 H 1.09003 * 109.47008 * 185.62671 * 1 2 3 31 31 H 1.08997 * 109.47505 * 305.63028 * 1 2 3 32 32 H 1.08997 * 109.46951 * 53.94953 * 3 2 1 33 33 H 1.09001 * 109.47168 * 173.95425 * 3 2 1 34 34 H 1.08999 * 110.48436 * 240.13102 * 6 4 3 35 35 H 1.08998 * 110.48565 * 2.77670 * 6 4 3 36 36 H 1.08998 * 110.90941 * 139.07833 * 7 6 4 37 37 H 1.09007 * 110.90496 * 262.64644 * 7 6 4 38 38 H 1.08991 * 110.61686 * 81.47696 * 8 7 6 39 39 H 1.09001 * 110.61689 * 204.32151 * 8 7 6 40 40 H 1.08996 * 109.47217 * 29.96100 * 14 13 12 41 41 H 1.09001 * 109.47041 * 149.95886 * 14 13 12 42 42 H 1.08996 * 109.47471 * 300.00475 * 15 14 13 43 43 H 1.09006 * 109.46805 * 60.00677 * 15 14 13 44 44 H 0.97011 * 120.00118 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47394 * 206.99776 * 25 24 10 46 46 H 1.08999 * 109.47281 * 326.99970 * 25 24 10 47 47 H 1.08995 * 115.54890 * 29.33106 * 26 25 24 48 48 H 1.09000 * 117.50230 * 0.02562 * 27 26 25 49 49 H 1.09007 * 117.49515 * 145.02336 * 27 26 25 50 50 H 1.09000 * 117.50038 * 252.50690 * 28 27 26 51 51 H 1.09003 * 117.49575 * 107.48913 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5484 2.0769 -1.4391 6 6 2.1861 3.4951 -1.3315 7 6 3.1119 3.5332 -2.5718 8 6 2.5781 2.3452 -3.4121 9 8 2.2334 1.3538 -2.4179 10 6 1.9656 -0.7226 1.0732 11 7 1.8840 -0.3923 2.3405 12 7 2.4478 -1.2929 3.0636 13 6 2.9270 -2.2386 2.3062 14 6 3.6638 -3.4682 2.7712 15 6 5.1638 -3.1726 2.8295 16 6 5.9004 -4.4020 3.2951 17 1 5.3534 -5.3042 3.5259 18 6 7.2728 -4.3754 3.4254 19 7 7.9156 -5.4485 3.8312 20 14 8.2189 -2.8152 3.0254 21 1 8.3353 -1.9797 4.2476 22 1 9.5757 -3.1705 2.5376 23 1 7.4978 -2.0551 1.9730 24 7 2.6369 -1.9089 1.0113 25 6 2.9768 -2.6710 -0.1929 26 6 4.3104 -2.1718 -0.7527 27 6 4.2975 -1.5292 -2.1412 28 6 4.8998 -2.9224 -1.9486 29 1 -0.3633 0.4241 -0.9361 30 1 -0.3633 -1.0227 0.1008 31 1 -0.3634 0.5986 0.8352 32 1 1.5610 1.9274 0.8309 33 1 3.0797 1.3444 0.1082 34 1 1.3754 4.2158 -1.4382 35 1 2.7562 3.6923 -0.4237 36 1 2.9998 4.4732 -3.1121 37 1 4.1515 3.3724 -2.2862 38 1 1.6950 2.6416 -3.9780 39 1 3.3526 1.9693 -4.0806 40 1 3.3102 -3.7503 3.7629 41 1 3.4816 -4.2863 2.0742 42 1 5.5173 -2.8905 1.8378 43 1 5.3460 -2.3546 3.5265 44 1 8.8812 -5.4297 3.9233 45 1 3.0610 -3.7283 0.0580 46 1 2.1955 -2.5361 -0.9409 47 1 5.0075 -1.7692 -0.0179 48 1 3.3389 -1.4617 -2.6556 49 1 4.9863 -0.7035 -2.3200 50 1 5.9848 -3.0133 -2.0008 51 1 4.3375 -3.7718 -2.3365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123601783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:44 Heat of formation + Delta-G solvation = 62.396710 kcal Electronic energy + Delta-G solvation = -30410.525008 eV Core-core repulsion = 26540.328755 eV Total energy + Delta-G solvation = -3870.196253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.66115 -39.81726 -37.58279 -37.26188 -34.45712 -33.69017 -32.42712 -31.88774 -30.67467 -28.89038 -27.55687 -26.82910 -25.54933 -24.60581 -22.33430 -22.26469 -21.63213 -21.29167 -21.07322 -20.33981 -19.61077 -17.42505 -16.93502 -16.70148 -16.39285 -15.92752 -15.73733 -15.62475 -15.00118 -14.54563 -14.37701 -14.15815 -13.92571 -13.89581 -13.45633 -13.28897 -12.89689 -12.74845 -12.61843 -12.31803 -12.13401 -11.90652 -11.83844 -11.64557 -11.46741 -11.42549 -11.39053 -11.28521 -11.08181 -10.97825 -10.53356 -10.40457 -10.35441 -10.01797 -9.90862 -9.86484 -9.83195 -9.72612 -9.27246 -8.79283 -8.57091 -8.48317 -6.08319 -4.07054 2.02153 2.47493 3.18873 3.29700 3.36793 3.40225 3.51147 3.73629 3.92482 4.22270 4.42339 4.43365 4.56635 4.69111 4.71840 4.81764 4.88952 4.90426 4.96824 5.04102 5.10379 5.15612 5.23350 5.26136 5.29157 5.34884 5.37114 5.44403 5.45269 5.49709 5.56107 5.57975 5.62448 5.68994 5.74589 5.76945 5.84815 5.99441 6.18756 6.22154 6.26185 6.33587 6.38651 6.50157 6.54600 6.76430 6.88947 7.17530 7.30134 7.45013 7.71383 8.46289 8.95192 9.09829 9.53764 11.04695 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.003561 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.710782 B = 7860.930636 C = 8530.115021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.451 5.451 3 C 0.073 3.927 4 C 0.083 3.917 5 H 0.070 0.930 6 C -0.152 4.152 7 C -0.155 4.155 8 C 0.043 3.957 9 O -0.350 6.350 10 C 0.326 3.674 11 N -0.318 5.318 12 N -0.298 5.298 13 C 0.210 3.790 14 C -0.022 4.022 15 C -0.003 4.003 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.900 5.900 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.268 1.268 24 N -0.459 5.459 25 C 0.149 3.851 26 C -0.169 4.169 27 C -0.157 4.157 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.264 0.736 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 15.482 -17.956 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.176 5.176 3 C -0.055 4.055 4 C 0.024 3.976 5 H 0.087 0.913 6 C -0.190 4.190 7 C -0.192 4.192 8 C -0.034 4.034 9 O -0.269 6.269 10 C -0.030 4.030 11 N -0.162 5.162 12 N -0.137 5.137 13 C -0.057 4.057 14 C -0.062 4.062 15 C -0.042 4.042 16 C -0.558 4.558 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.193 1.193 24 N -0.151 5.151 25 C 0.026 3.974 26 C -0.188 4.188 27 C -0.194 4.194 28 C -0.208 4.208 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.118 0.882 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.755 15.721 -17.128 27.013 hybrid contribution 0.768 0.729 -0.659 1.247 sum -12.987 16.449 -17.787 27.489 Atomic orbital electron populations 1.22455 0.84585 1.02623 1.01723 1.58476 1.08714 1.13997 1.36380 1.22360 1.01323 0.86120 0.95664 1.22756 0.97207 0.90300 0.87294 0.91255 1.22967 0.99878 0.96503 0.99674 1.23118 1.00395 0.99417 0.96298 1.23567 0.99238 0.88588 0.92026 1.89089 1.80345 1.29794 1.27667 1.22153 1.01148 0.88704 0.91012 1.74488 1.20069 1.22134 0.99490 1.74045 1.13631 1.00258 1.25806 1.25631 1.00174 1.00609 0.79292 1.20230 0.96212 0.87987 1.01783 1.19550 0.89390 0.98226 0.97008 1.21006 0.91969 0.97621 1.45227 0.90616 1.24941 0.97665 0.95911 0.94454 1.69899 1.08553 1.28312 1.47080 0.86832 0.79242 0.84166 0.79370 1.20125 1.21326 1.19300 1.46327 1.41931 1.18430 1.08378 1.21361 0.96221 0.95413 0.84397 1.22489 0.98007 1.05916 0.92390 1.22944 1.02739 0.95548 0.98163 1.22958 1.01065 0.95749 1.01072 0.90200 0.91412 0.93923 0.91801 0.89957 0.90429 0.90155 0.90363 0.90438 0.92502 0.89094 0.88785 0.90619 0.96559 0.96284 0.92638 0.88326 0.88591 0.87380 0.88200 0.89299 0.88505 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.19 60.06 0.55 0.91 16 2 N -0.45 -5.81 4.69 -182.38 -0.85 -6.66 16 3 C 0.07 0.84 4.29 -3.82 -0.02 0.83 16 4 C 0.08 0.74 3.28 -26.16 -0.09 0.65 16 5 H 0.07 0.55 6.67 -51.93 -0.35 0.21 16 6 C -0.15 -1.07 6.64 -25.20 -0.17 -1.24 16 7 C -0.15 -1.01 7.16 -24.72 -0.18 -1.19 16 8 C 0.04 0.31 7.72 38.21 0.29 0.61 16 9 O -0.35 -3.59 11.11 -35.23 -0.39 -3.98 16 10 C 0.33 5.36 6.41 -318.88 -2.04 3.32 16 11 N -0.32 -6.12 12.12 30.31 0.37 -5.75 16 12 N -0.30 -6.28 12.18 32.99 0.40 -5.88 16 13 C 0.21 4.08 7.32 -154.01 -1.13 2.95 16 14 C -0.02 -0.45 5.52 -27.89 -0.15 -0.60 16 15 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 16 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 20 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 24 N -0.46 -7.66 2.81 -114.08 -0.32 -7.98 16 25 C 0.15 2.05 6.33 -4.04 -0.03 2.02 16 26 C -0.17 -2.40 6.01 -90.62 -0.54 -2.94 16 27 C -0.16 -1.86 10.18 -26.73 -0.27 -2.13 16 28 C -0.17 -2.06 10.25 -26.73 -0.27 -2.33 16 29 H 0.08 0.66 6.74 -51.93 -0.35 0.31 16 30 H 0.07 0.73 8.06 -51.93 -0.42 0.32 16 31 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 41 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 42 H 0.02 0.39 6.55 -51.93 -0.34 0.05 16 43 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.10 1.30 7.17 -51.93 -0.37 0.92 16 46 H 0.10 1.15 7.87 -51.93 -0.41 0.75 16 47 H 0.11 1.89 7.49 -51.93 -0.39 1.50 16 48 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 49 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 50 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -33.14 409.36 -11.96 -45.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.86 Total: 0.47 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -4.58 Total: -12.14 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.37 Total: -52.86 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.39 Total: -3.98 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.14 -11.96 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123601783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.502 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds