Wall clock time and date at job start Tue Mar 31 2020 18:03:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46893 * 1
3 3 C 1.46904 * 111.00111 * 2 1
4 4 C 1.53004 * 109.46959 * 293.95118 * 3 2 1
5 5 H 1.08997 * 109.86711 * 59.29765 * 4 3 2
6 6 C 1.54099 * 109.87796 * 180.30490 * 4 3 2
7 7 C 1.54812 * 104.18603 * 121.45491 * 6 4 3
8 8 C 1.54996 * 102.09432 * 20.87878 * 7 6 4
9 9 O 1.43750 * 109.87590 * 298.29208 * 4 3 2
10 10 C 1.38586 * 110.99910 * 123.95155 * 2 1 3
11 11 N 1.31217 * 126.47174 * 291.49997 * 10 2 1
12 12 N 1.28522 * 109.86104 * 179.82181 * 11 10 2
13 13 C 1.30301 * 110.05227 * 0.45324 * 12 11 10
14 14 C 1.50696 * 126.34516 * 179.76115 * 13 12 11
15 15 C 1.52999 * 109.47358 * 269.95470 * 14 13 12
16 16 C 1.50698 * 109.46983 * 179.97438 * 15 14 13
17 17 H 1.07996 * 120.00312 * 0.02562 * 16 15 14
18 18 C 1.37885 * 119.99716 * 179.97438 * 16 15 14
19 19 N 1.31509 * 119.99718 * 180.02562 * 18 16 15
20 20 Si 1.86798 * 120.00043 * 0.02562 * 18 16 15
21 21 H 1.48503 * 109.47434 * 89.99521 * 20 18 16
22 22 H 1.48497 * 109.46880 * 209.99485 * 20 18 16
23 23 H 1.48502 * 109.47082 * 329.99595 * 20 18 16
24 24 N 1.36446 * 126.47305 * 111.81466 * 10 2 1
25 25 C 1.46502 * 127.13898 * 0.02562 * 24 10 2
26 26 C 1.53005 * 109.46774 * 86.99464 * 25 24 10
27 27 C 1.52997 * 117.49747 * 243.62030 * 26 25 24
28 28 C 1.52999 * 60.00104 * 252.51261 * 27 26 25
29 29 H 1.09004 * 109.46769 * 65.62880 * 1 2 3
30 30 H 1.09003 * 109.47008 * 185.62671 * 1 2 3
31 31 H 1.08997 * 109.47505 * 305.63028 * 1 2 3
32 32 H 1.08997 * 109.46951 * 53.94953 * 3 2 1
33 33 H 1.09001 * 109.47168 * 173.95425 * 3 2 1
34 34 H 1.08999 * 110.48436 * 240.13102 * 6 4 3
35 35 H 1.08998 * 110.48565 * 2.77670 * 6 4 3
36 36 H 1.08998 * 110.90941 * 139.07833 * 7 6 4
37 37 H 1.09007 * 110.90496 * 262.64644 * 7 6 4
38 38 H 1.08991 * 110.61686 * 81.47696 * 8 7 6
39 39 H 1.09001 * 110.61689 * 204.32151 * 8 7 6
40 40 H 1.08996 * 109.47217 * 29.96100 * 14 13 12
41 41 H 1.09001 * 109.47041 * 149.95886 * 14 13 12
42 42 H 1.08996 * 109.47471 * 300.00475 * 15 14 13
43 43 H 1.09006 * 109.46805 * 60.00677 * 15 14 13
44 44 H 0.97011 * 120.00118 * 180.02562 * 19 18 16
45 45 H 1.08998 * 109.47394 * 206.99776 * 25 24 10
46 46 H 1.08999 * 109.47281 * 326.99970 * 25 24 10
47 47 H 1.08995 * 115.54890 * 29.33106 * 26 25 24
48 48 H 1.09000 * 117.50230 * 0.02562 * 27 26 25
49 49 H 1.09007 * 117.49515 * 145.02336 * 27 26 25
50 50 H 1.09000 * 117.50038 * 252.50690 * 28 27 26
51 51 H 1.09003 * 117.49575 * 107.48913 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6315 2.0574 -1.3183
5 1 0.5484 2.0769 -1.4391
6 6 2.1861 3.4951 -1.3315
7 6 3.1119 3.5332 -2.5718
8 6 2.5781 2.3452 -3.4121
9 8 2.2334 1.3538 -2.4179
10 6 1.9656 -0.7226 1.0732
11 7 1.8840 -0.3923 2.3405
12 7 2.4478 -1.2929 3.0636
13 6 2.9270 -2.2386 2.3062
14 6 3.6638 -3.4682 2.7712
15 6 5.1638 -3.1726 2.8295
16 6 5.9004 -4.4020 3.2951
17 1 5.3534 -5.3042 3.5259
18 6 7.2728 -4.3754 3.4254
19 7 7.9156 -5.4485 3.8312
20 14 8.2189 -2.8152 3.0254
21 1 8.3353 -1.9797 4.2476
22 1 9.5757 -3.1705 2.5376
23 1 7.4978 -2.0551 1.9730
24 7 2.6369 -1.9089 1.0113
25 6 2.9768 -2.6710 -0.1929
26 6 4.3104 -2.1718 -0.7527
27 6 4.2975 -1.5292 -2.1412
28 6 4.8998 -2.9224 -1.9486
29 1 -0.3633 0.4241 -0.9361
30 1 -0.3633 -1.0227 0.1008
31 1 -0.3634 0.5986 0.8352
32 1 1.5610 1.9274 0.8309
33 1 3.0797 1.3444 0.1082
34 1 1.3754 4.2158 -1.4382
35 1 2.7562 3.6923 -0.4237
36 1 2.9998 4.4732 -3.1121
37 1 4.1515 3.3724 -2.2862
38 1 1.6950 2.6416 -3.9780
39 1 3.3526 1.9693 -4.0806
40 1 3.3102 -3.7503 3.7629
41 1 3.4816 -4.2863 2.0742
42 1 5.5173 -2.8905 1.8378
43 1 5.3460 -2.3546 3.5265
44 1 8.8812 -5.4297 3.9233
45 1 3.0610 -3.7283 0.0580
46 1 2.1955 -2.5361 -0.9409
47 1 5.0075 -1.7692 -0.0179
48 1 3.3389 -1.4617 -2.6556
49 1 4.9863 -0.7035 -2.3200
50 1 5.9848 -3.0133 -2.0008
51 1 4.3375 -3.7718 -2.3365
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001123601783.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:03:44
Heat of formation + Delta-G solvation = 62.396710 kcal
Electronic energy + Delta-G solvation = -30410.525008 eV
Core-core repulsion = 26540.328755 eV
Total energy + Delta-G solvation = -3870.196253 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.66115 -39.81726 -37.58279 -37.26188 -34.45712 -33.69017 -32.42712 -31.88774
-30.67467 -28.89038 -27.55687 -26.82910 -25.54933 -24.60581 -22.33430 -22.26469
-21.63213 -21.29167 -21.07322 -20.33981 -19.61077 -17.42505 -16.93502 -16.70148
-16.39285 -15.92752 -15.73733 -15.62475 -15.00118 -14.54563 -14.37701 -14.15815
-13.92571 -13.89581 -13.45633 -13.28897 -12.89689 -12.74845 -12.61843 -12.31803
-12.13401 -11.90652 -11.83844 -11.64557 -11.46741 -11.42549 -11.39053 -11.28521
-11.08181 -10.97825 -10.53356 -10.40457 -10.35441 -10.01797 -9.90862 -9.86484
-9.83195 -9.72612 -9.27246 -8.79283 -8.57091 -8.48317 -6.08319 -4.07054
2.02153 2.47493 3.18873 3.29700 3.36793 3.40225 3.51147 3.73629
3.92482 4.22270 4.42339 4.43365 4.56635 4.69111 4.71840 4.81764
4.88952 4.90426 4.96824 5.04102 5.10379 5.15612 5.23350 5.26136
5.29157 5.34884 5.37114 5.44403 5.45269 5.49709 5.56107 5.57975
5.62448 5.68994 5.74589 5.76945 5.84815 5.99441 6.18756 6.22154
6.26185 6.33587 6.38651 6.50157 6.54600 6.76430 6.88947 7.17530
7.30134 7.45013 7.71383 8.46289 8.95192 9.09829 9.53764 11.04695
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.012956 B = 0.003561 C = 0.003282
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2160.710782 B = 7860.930636 C = 8530.115021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 N -0.451 5.451
3 C 0.073 3.927
4 C 0.083 3.917
5 H 0.070 0.930
6 C -0.152 4.152
7 C -0.155 4.155
8 C 0.043 3.957
9 O -0.350 6.350
10 C 0.326 3.674
11 N -0.318 5.318
12 N -0.298 5.298
13 C 0.210 3.790
14 C -0.022 4.022
15 C -0.003 4.003
16 C -0.520 4.520
17 H 0.076 0.924
18 C 0.072 3.928
19 N -0.900 5.900
20 Si 0.876 3.124
21 H -0.276 1.276
22 H -0.287 1.287
23 H -0.268 1.268
24 N -0.459 5.459
25 C 0.149 3.851
26 C -0.169 4.169
27 C -0.157 4.157
28 C -0.171 4.171
29 H 0.079 0.921
30 H 0.067 0.933
31 H 0.042 0.958
32 H 0.064 0.936
33 H 0.082 0.918
34 H 0.077 0.923
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.077 0.923
38 H 0.057 0.943
39 H 0.091 0.909
40 H 0.094 0.906
41 H 0.075 0.925
42 H 0.016 0.984
43 H 0.019 0.981
44 H 0.264 0.736
45 H 0.099 0.901
46 H 0.096 0.904
47 H 0.108 0.892
48 H 0.100 0.900
49 H 0.088 0.912
50 H 0.096 0.904
51 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.755 15.482 -17.956 27.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 N -0.176 5.176
3 C -0.055 4.055
4 C 0.024 3.976
5 H 0.087 0.913
6 C -0.190 4.190
7 C -0.192 4.192
8 C -0.034 4.034
9 O -0.269 6.269
10 C -0.030 4.030
11 N -0.162 5.162
12 N -0.137 5.137
13 C -0.057 4.057
14 C -0.062 4.062
15 C -0.042 4.042
16 C -0.558 4.558
17 H 0.094 0.906
18 C -0.130 4.130
19 N -0.538 5.538
20 Si 0.704 3.296
21 H -0.201 1.201
22 H -0.213 1.213
23 H -0.193 1.193
24 N -0.151 5.151
25 C 0.026 3.974
26 C -0.188 4.188
27 C -0.194 4.194
28 C -0.208 4.208
29 H 0.098 0.902
30 H 0.086 0.914
31 H 0.061 0.939
32 H 0.082 0.918
33 H 0.100 0.900
34 H 0.096 0.904
35 H 0.098 0.902
36 H 0.096 0.904
37 H 0.096 0.904
38 H 0.075 0.925
39 H 0.109 0.891
40 H 0.112 0.888
41 H 0.094 0.906
42 H 0.034 0.966
43 H 0.037 0.963
44 H 0.074 0.926
45 H 0.117 0.883
46 H 0.114 0.886
47 H 0.126 0.874
48 H 0.118 0.882
49 H 0.107 0.893
50 H 0.115 0.885
51 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -13.755 15.721 -17.128 27.013
hybrid contribution 0.768 0.729 -0.659 1.247
sum -12.987 16.449 -17.787 27.489
Atomic orbital electron populations
1.22455 0.84585 1.02623 1.01723 1.58476 1.08714 1.13997 1.36380
1.22360 1.01323 0.86120 0.95664 1.22756 0.97207 0.90300 0.87294
0.91255 1.22967 0.99878 0.96503 0.99674 1.23118 1.00395 0.99417
0.96298 1.23567 0.99238 0.88588 0.92026 1.89089 1.80345 1.29794
1.27667 1.22153 1.01148 0.88704 0.91012 1.74488 1.20069 1.22134
0.99490 1.74045 1.13631 1.00258 1.25806 1.25631 1.00174 1.00609
0.79292 1.20230 0.96212 0.87987 1.01783 1.19550 0.89390 0.98226
0.97008 1.21006 0.91969 0.97621 1.45227 0.90616 1.24941 0.97665
0.95911 0.94454 1.69899 1.08553 1.28312 1.47080 0.86832 0.79242
0.84166 0.79370 1.20125 1.21326 1.19300 1.46327 1.41931 1.18430
1.08378 1.21361 0.96221 0.95413 0.84397 1.22489 0.98007 1.05916
0.92390 1.22944 1.02739 0.95548 0.98163 1.22958 1.01065 0.95749
1.01072 0.90200 0.91412 0.93923 0.91801 0.89957 0.90429 0.90155
0.90363 0.90438 0.92502 0.89094 0.88785 0.90619 0.96559 0.96284
0.92638 0.88326 0.88591 0.87380 0.88200 0.89299 0.88505 0.88607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 9.19 60.06 0.55 0.91 16
2 N -0.45 -5.81 4.69 -182.38 -0.85 -6.66 16
3 C 0.07 0.84 4.29 -3.82 -0.02 0.83 16
4 C 0.08 0.74 3.28 -26.16 -0.09 0.65 16
5 H 0.07 0.55 6.67 -51.93 -0.35 0.21 16
6 C -0.15 -1.07 6.64 -25.20 -0.17 -1.24 16
7 C -0.15 -1.01 7.16 -24.72 -0.18 -1.19 16
8 C 0.04 0.31 7.72 38.21 0.29 0.61 16
9 O -0.35 -3.59 11.11 -35.23 -0.39 -3.98 16
10 C 0.33 5.36 6.41 -318.88 -2.04 3.32 16
11 N -0.32 -6.12 12.12 30.31 0.37 -5.75 16
12 N -0.30 -6.28 12.18 32.99 0.40 -5.88 16
13 C 0.21 4.08 7.32 -154.01 -1.13 2.95 16
14 C -0.02 -0.45 5.52 -27.89 -0.15 -0.60 16
15 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16
16 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16
17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16
18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16
19 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16
20 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16
21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
23 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16
24 N -0.46 -7.66 2.81 -114.08 -0.32 -7.98 16
25 C 0.15 2.05 6.33 -4.04 -0.03 2.02 16
26 C -0.17 -2.40 6.01 -90.62 -0.54 -2.94 16
27 C -0.16 -1.86 10.18 -26.73 -0.27 -2.13 16
28 C -0.17 -2.06 10.25 -26.73 -0.27 -2.33 16
29 H 0.08 0.66 6.74 -51.93 -0.35 0.31 16
30 H 0.07 0.73 8.06 -51.93 -0.42 0.32 16
31 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16
32 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16
33 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16
34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16
36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16
41 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16
42 H 0.02 0.39 6.55 -51.93 -0.34 0.05 16
43 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16
44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
45 H 0.10 1.30 7.17 -51.93 -0.37 0.92 16
46 H 0.10 1.15 7.87 -51.93 -0.41 0.75 16
47 H 0.11 1.89 7.49 -51.93 -0.39 1.50 16
48 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16
49 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16
50 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16
51 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16
LS Contribution 409.36 15.07 6.17 6.17
Total: -1.00 -33.14 409.36 -11.96 -45.10
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -8.86 Total: 0.47 kcal
Atomic # 6 Polarization: -7.56 SS G_CDS: -4.58 Total: -12.14 kcal
Atomic # 7 Polarization: -53.23 SS G_CDS: 0.37 Total: -52.86 kcal
Atomic # 8 Polarization: -3.59 SS G_CDS: -0.39 Total: -3.98 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -33.14 -11.96 -45.10 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001123601783.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.502 kcal
(2) G-P(sol) polarization free energy of solvation -33.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.964 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds