Wall clock time and date at job start Tue Mar 31 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00111 * 2 1 4 4 C 1.53004 * 109.46959 * 293.95118 * 3 2 1 5 5 H 1.08997 * 109.86711 * 59.29765 * 4 3 2 6 6 C 1.54099 * 109.87796 * 180.30490 * 4 3 2 7 7 C 1.54812 * 104.18603 * 121.45491 * 6 4 3 8 8 C 1.54996 * 102.09432 * 20.87878 * 7 6 4 9 9 O 1.43750 * 109.87590 * 298.29208 * 4 3 2 10 10 C 1.38586 * 110.99910 * 123.95155 * 2 1 3 11 11 N 1.31217 * 126.47174 * 291.49997 * 10 2 1 12 12 N 1.28522 * 109.86104 * 179.82181 * 11 10 2 13 13 C 1.30301 * 110.05227 * 0.45324 * 12 11 10 14 14 C 1.50696 * 126.34516 * 179.76115 * 13 12 11 15 15 C 1.52999 * 109.47358 * 269.95470 * 14 13 12 16 16 C 1.50698 * 109.46983 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00312 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99716 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99718 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47434 * 89.99521 * 20 18 16 22 22 H 1.48497 * 109.46880 * 209.99485 * 20 18 16 23 23 H 1.48502 * 109.47082 * 329.99595 * 20 18 16 24 24 N 1.36446 * 126.47305 * 111.81466 * 10 2 1 25 25 C 1.46502 * 127.13898 * 0.02562 * 24 10 2 26 26 C 1.53005 * 109.46774 * 86.99464 * 25 24 10 27 27 C 1.52997 * 117.49747 * 243.62030 * 26 25 24 28 28 C 1.52999 * 60.00104 * 252.51261 * 27 26 25 29 29 H 1.09004 * 109.46769 * 65.62880 * 1 2 3 30 30 H 1.09003 * 109.47008 * 185.62671 * 1 2 3 31 31 H 1.08997 * 109.47505 * 305.63028 * 1 2 3 32 32 H 1.08997 * 109.46951 * 53.94953 * 3 2 1 33 33 H 1.09001 * 109.47168 * 173.95425 * 3 2 1 34 34 H 1.08999 * 110.48436 * 240.13102 * 6 4 3 35 35 H 1.08998 * 110.48565 * 2.77670 * 6 4 3 36 36 H 1.08998 * 110.90941 * 139.07833 * 7 6 4 37 37 H 1.09007 * 110.90496 * 262.64644 * 7 6 4 38 38 H 1.08991 * 110.61686 * 81.47696 * 8 7 6 39 39 H 1.09001 * 110.61689 * 204.32151 * 8 7 6 40 40 H 1.08996 * 109.47217 * 29.96100 * 14 13 12 41 41 H 1.09001 * 109.47041 * 149.95886 * 14 13 12 42 42 H 1.08996 * 109.47471 * 300.00475 * 15 14 13 43 43 H 1.09006 * 109.46805 * 60.00677 * 15 14 13 44 44 H 0.97011 * 120.00118 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47394 * 206.99776 * 25 24 10 46 46 H 1.08999 * 109.47281 * 326.99970 * 25 24 10 47 47 H 1.08995 * 115.54890 * 29.33106 * 26 25 24 48 48 H 1.09000 * 117.50230 * 0.02562 * 27 26 25 49 49 H 1.09007 * 117.49515 * 145.02336 * 27 26 25 50 50 H 1.09000 * 117.50038 * 252.50690 * 28 27 26 51 51 H 1.09003 * 117.49575 * 107.48913 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5484 2.0769 -1.4391 6 6 2.1861 3.4951 -1.3315 7 6 3.1119 3.5332 -2.5718 8 6 2.5781 2.3452 -3.4121 9 8 2.2334 1.3538 -2.4179 10 6 1.9656 -0.7226 1.0732 11 7 1.8840 -0.3923 2.3405 12 7 2.4478 -1.2929 3.0636 13 6 2.9270 -2.2386 2.3062 14 6 3.6638 -3.4682 2.7712 15 6 5.1638 -3.1726 2.8295 16 6 5.9004 -4.4020 3.2951 17 1 5.3534 -5.3042 3.5259 18 6 7.2728 -4.3754 3.4254 19 7 7.9156 -5.4485 3.8312 20 14 8.2189 -2.8152 3.0254 21 1 8.3353 -1.9797 4.2476 22 1 9.5757 -3.1705 2.5376 23 1 7.4978 -2.0551 1.9730 24 7 2.6369 -1.9089 1.0113 25 6 2.9768 -2.6710 -0.1929 26 6 4.3104 -2.1718 -0.7527 27 6 4.2975 -1.5292 -2.1412 28 6 4.8998 -2.9224 -1.9486 29 1 -0.3633 0.4241 -0.9361 30 1 -0.3633 -1.0227 0.1008 31 1 -0.3634 0.5986 0.8352 32 1 1.5610 1.9274 0.8309 33 1 3.0797 1.3444 0.1082 34 1 1.3754 4.2158 -1.4382 35 1 2.7562 3.6923 -0.4237 36 1 2.9998 4.4732 -3.1121 37 1 4.1515 3.3724 -2.2862 38 1 1.6950 2.6416 -3.9780 39 1 3.3526 1.9693 -4.0806 40 1 3.3102 -3.7503 3.7629 41 1 3.4816 -4.2863 2.0742 42 1 5.5173 -2.8905 1.8378 43 1 5.3460 -2.3546 3.5265 44 1 8.8812 -5.4297 3.9233 45 1 3.0610 -3.7283 0.0580 46 1 2.1955 -2.5361 -0.9409 47 1 5.0075 -1.7692 -0.0179 48 1 3.3389 -1.4617 -2.6556 49 1 4.9863 -0.7035 -2.3200 50 1 5.9848 -3.0133 -2.0008 51 1 4.3375 -3.7718 -2.3365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123601783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:43 Heat of formation + Delta-G solvation = 44.490707 kcal Electronic energy + Delta-G solvation = -30411.301470 eV Core-core repulsion = 26540.328755 eV Total energy + Delta-G solvation = -3870.972716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.05509 -40.50673 -38.66121 -38.25343 -36.16211 -35.21278 -33.84110 -33.01947 -31.57718 -30.35252 -28.74046 -27.80361 -27.19927 -25.57149 -23.49089 -23.16944 -22.98413 -22.49035 -21.94476 -21.45249 -21.02767 -19.10817 -18.35804 -17.79421 -17.43610 -16.86595 -16.63546 -16.43100 -16.31217 -16.13710 -15.55775 -15.28292 -15.15411 -14.98530 -14.80059 -14.62222 -14.44782 -14.02179 -13.50960 -13.43635 -13.13937 -13.04462 -12.97382 -12.91902 -12.72772 -12.52960 -12.34402 -12.28553 -12.16981 -12.10662 -11.97129 -11.84818 -11.61736 -11.54640 -11.53266 -11.42154 -10.96564 -10.94536 -10.79515 -10.54725 -10.05047 -9.79535 -8.32355 -6.35218 0.66413 1.23071 1.29194 1.31413 1.41043 1.71630 2.30574 2.56598 2.89198 3.01038 3.03075 3.38855 3.61869 3.65837 3.74882 3.76172 3.94945 3.97333 4.00938 4.03803 4.10934 4.18761 4.22997 4.25708 4.36779 4.44635 4.49075 4.55743 4.57151 4.62625 4.67193 4.71764 4.81112 4.82703 4.85617 4.87226 4.97324 4.98711 5.01410 5.06683 5.12740 5.15361 5.22134 5.27346 5.29775 5.41020 5.49930 5.60729 5.62101 6.10039 6.20982 6.22824 6.71112 7.28922 7.65670 8.83735 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.003561 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.710782 B = 7860.930636 C = 8530.115021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.448 5.448 3 C 0.075 3.925 4 C 0.089 3.911 5 H 0.087 0.913 6 C -0.151 4.151 7 C -0.152 4.152 8 C 0.039 3.961 9 O -0.374 6.374 10 C 0.345 3.655 11 N -0.347 5.347 12 N -0.329 5.329 13 C 0.198 3.802 14 C -0.011 4.011 15 C 0.008 3.992 16 C -0.523 4.523 17 H 0.050 0.950 18 C 0.019 3.981 19 N -0.941 5.941 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.259 1.259 24 N -0.456 5.456 25 C 0.148 3.852 26 C -0.191 4.191 27 C -0.136 4.136 28 C -0.161 4.161 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.019 0.981 43 H 0.004 0.996 44 H 0.267 0.733 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.070 0.930 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 17.241 -20.939 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.174 5.174 3 C -0.052 4.052 4 C 0.031 3.969 5 H 0.104 0.896 6 C -0.189 4.189 7 C -0.190 4.190 8 C -0.037 4.037 9 O -0.294 6.294 10 C -0.012 4.012 11 N -0.191 5.191 12 N -0.169 5.169 13 C -0.070 4.070 14 C -0.051 4.051 15 C -0.031 4.031 16 C -0.561 4.561 17 H 0.068 0.932 18 C -0.179 4.179 19 N -0.582 5.582 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.202 1.202 23 H -0.184 1.184 24 N -0.147 5.147 25 C 0.027 3.973 26 C -0.211 4.211 27 C -0.173 4.173 28 C -0.198 4.198 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.037 0.963 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.137 0.863 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.051 17.487 -20.129 30.618 hybrid contribution 1.121 0.187 0.219 1.157 sum -13.930 17.673 -19.910 30.046 Atomic orbital electron populations 1.22562 0.82722 1.02789 1.03228 1.58789 1.10140 1.14384 1.34044 1.22388 0.99625 0.85535 0.97676 1.22753 0.98069 0.90627 0.85484 0.89554 1.22992 1.00552 0.95787 0.99573 1.23113 0.99511 1.00218 0.96134 1.23728 1.00126 0.88183 0.91654 1.89047 1.80642 1.31262 1.28414 1.22592 0.99194 0.88253 0.91165 1.74418 1.21457 1.22442 1.00809 1.73945 1.14569 1.01088 1.27308 1.25273 1.01001 1.00280 0.80488 1.19964 0.93714 0.89075 1.02305 1.19354 0.91714 0.95762 0.96258 1.21276 0.92245 0.98090 1.44514 0.93213 1.25726 0.98802 0.98854 0.94524 1.70016 1.09088 1.30421 1.48659 0.85879 0.78279 0.80412 0.79361 1.19951 1.20237 1.18373 1.46457 1.41305 1.18636 1.08292 1.21605 0.96708 0.95317 0.83705 1.22347 0.97762 1.08266 0.92687 1.22923 1.03152 0.95382 0.95861 1.23063 1.01093 0.96651 0.99018 0.87207 0.91629 0.94184 0.92022 0.92597 0.88303 0.91053 0.88356 0.91676 0.90874 0.88689 0.89267 0.88782 0.96301 0.97757 0.92342 0.87733 0.86252 0.91187 0.86911 0.89524 0.89008 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.19 127.69 1.17 1.80 16 2 N -0.45 -10.82 4.69 -730.92 -3.43 -14.24 16 3 C 0.08 1.66 4.29 86.30 0.37 2.03 16 4 C 0.09 1.37 3.28 30.97 0.10 1.47 16 5 H 0.09 1.05 6.67 -2.39 -0.02 1.04 16 6 C -0.15 -1.77 6.64 31.58 0.21 -1.56 16 7 C -0.15 -1.62 7.16 31.90 0.23 -1.39 16 8 C 0.04 0.46 7.72 72.67 0.56 1.02 16 9 O -0.37 -6.69 11.11 -148.98 -1.66 -8.35 16 10 C 0.35 11.14 6.41 260.11 1.67 12.81 16 11 N -0.35 -13.48 12.12 -58.00 -0.70 -14.19 16 12 N -0.33 -14.13 12.18 -49.54 -0.60 -14.73 16 13 C 0.20 7.75 7.32 137.64 1.01 8.76 16 14 C -0.01 -0.44 5.52 29.85 0.16 -0.27 16 15 C 0.01 0.37 4.02 29.85 0.12 0.49 16 16 C -0.52 -29.67 9.66 25.60 0.25 -29.42 16 17 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 18 C 0.02 1.11 5.47 84.66 0.46 1.57 16 19 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 20 Si 0.94 45.57 27.47 68.60 1.88 47.46 16 21 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 24 N -0.46 -14.95 2.81 -514.84 -1.45 -16.40 16 25 C 0.15 3.84 6.33 86.38 0.55 4.39 16 26 C -0.19 -5.23 6.01 -10.79 -0.06 -5.30 16 27 C -0.14 -2.94 10.18 30.59 0.31 -2.63 16 28 C -0.16 -3.54 10.25 30.59 0.31 -3.23 16 29 H 0.11 1.41 6.74 -2.38 -0.02 1.40 16 30 H 0.06 1.27 8.06 -2.39 -0.02 1.25 16 31 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.97 7.70 -2.39 -0.02 0.95 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.09 3.39 7.22 -2.39 -0.02 3.38 16 42 H 0.02 0.90 6.55 -2.39 -0.02 0.88 16 43 H 0.00 0.21 7.57 -2.38 -0.02 0.19 16 44 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 45 H 0.10 2.57 7.17 -2.39 -0.02 2.55 16 46 H 0.12 2.53 7.87 -2.39 -0.02 2.51 16 47 H 0.07 2.48 7.49 -2.39 -0.02 2.46 16 48 H 0.11 2.18 8.03 -2.39 -0.02 2.16 16 49 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 50 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.16 409.36 2.62 -70.54 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.84 Total: 17.36 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 7.42 Total: -9.47 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -5.88 Total: -117.54 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -1.66 Total: -8.35 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.46 kcal Total: -73.16 2.62 -70.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123601783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.033 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds