Wall clock time and date at job start Tue Mar 31 2020 18:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.45674 * 2 1 4 4 C 1.53038 * 109.44841 * 240.03522 * 2 1 3 5 5 C 1.52758 * 109.38318 * 301.22939 * 4 2 1 6 6 N 1.46923 * 109.00581 * 305.58534 * 5 4 2 7 7 C 1.34781 * 120.63477 * 233.58801 * 6 5 4 8 8 O 1.21276 * 120.00458 * 179.71948 * 7 6 5 9 9 C 1.50700 * 119.99391 * 359.71480 * 7 6 5 10 10 C 1.53004 * 109.47129 * 185.70265 * 9 7 6 11 11 C 1.53001 * 109.46683 * 66.20164 * 10 9 7 12 12 C 1.53003 * 117.49680 * 248.74567 * 11 10 9 13 13 C 1.52999 * 117.49657 * 180.09014 * 11 10 9 14 14 C 1.52995 * 109.47321 * 186.19861 * 10 9 7 15 15 C 1.52999 * 117.50104 * 134.05779 * 14 10 9 16 16 C 1.52997 * 117.50035 * 65.39622 * 14 10 9 17 17 C 1.46929 * 118.74000 * 53.30785 * 6 5 4 18 18 C 1.53035 * 109.46139 * 119.97142 * 2 1 3 19 19 H 1.09005 * 109.52317 * 178.60615 * 18 2 1 20 20 C 1.52997 * 109.50405 * 298.69032 * 18 2 1 21 21 N 1.46492 * 109.47506 * 184.83855 * 20 18 2 22 22 C 1.36942 * 119.99851 * 179.97438 * 21 20 18 23 23 H 1.07992 * 120.00342 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99805 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00008 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00001 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46860 * 90.00134 * 26 24 22 28 28 H 1.48496 * 109.47085 * 210.00339 * 26 24 22 29 29 H 1.48498 * 109.47113 * 330.00519 * 26 24 22 30 30 H 1.09004 * 109.46880 * 300.02662 * 1 2 3 31 31 H 1.09001 * 109.47425 * 60.02108 * 1 2 3 32 32 H 1.08998 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49440 * 61.29713 * 4 2 1 34 34 H 1.08997 * 109.49957 * 181.36495 * 4 2 1 35 35 H 1.09005 * 109.51031 * 185.70441 * 5 4 2 36 36 H 1.08994 * 109.43535 * 65.42008 * 5 4 2 37 37 H 1.09001 * 109.47851 * 305.70770 * 9 7 6 38 38 H 1.09008 * 109.46996 * 65.71119 * 9 7 6 39 39 H 1.08998 * 109.47160 * 306.19958 * 10 9 7 40 40 H 1.09001 * 115.55405 * 34.41300 * 11 10 9 41 41 H 1.09003 * 117.49721 * 0.02562 * 12 11 10 42 42 H 1.08999 * 117.49911 * 145.01671 * 12 11 10 43 43 H 1.09004 * 117.49842 * 214.97185 * 13 11 10 44 44 H 1.08997 * 117.50123 * 359.97438 * 13 11 10 45 45 H 1.09004 * 115.55071 * 279.72516 * 14 10 9 46 46 H 1.09002 * 117.49667 * 359.97438 * 15 14 10 47 47 H 1.08999 * 117.50007 * 145.01922 * 15 14 10 48 48 H 1.09005 * 117.49808 * 214.98135 * 16 14 10 49 49 H 1.09004 * 117.49734 * 0.02562 * 16 14 10 50 50 H 1.09005 * 109.58291 * 66.43297 * 17 6 5 51 51 H 1.09004 * 109.58576 * 186.85168 * 17 6 5 52 52 H 1.09000 * 109.46871 * 304.83970 * 20 18 2 53 53 H 1.09008 * 109.47159 * 64.83371 * 20 18 2 54 54 H 0.96995 * 120.00353 * 359.97438 * 21 20 18 55 55 H 0.96994 * 120.00004 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 1.5039 -2.1513 -1.2644 6 7 1.8620 -2.8089 -0.0003 7 6 2.5157 -3.9875 -0.0003 8 8 2.8101 -4.5178 1.0499 9 6 2.8806 -4.6465 -1.3055 10 6 3.4820 -6.0261 -1.0297 11 6 2.4101 -6.9391 -0.4310 12 6 2.5712 -7.3517 1.0335 13 6 2.8177 -8.3717 -0.0809 14 6 3.9936 -6.6305 -2.3388 15 6 5.3834 -7.2701 -2.3261 16 6 5.1640 -5.9291 -3.0309 17 6 1.4994 -2.1541 1.2641 18 6 2.0399 -0.7208 1.2500 19 1 3.1297 -0.7431 1.2386 20 6 1.5573 0.0193 2.4990 21 7 2.1398 -0.6025 3.6907 22 6 1.8488 -0.1063 4.9335 23 1 1.1897 0.7431 5.0351 24 6 2.4004 -0.6958 6.0627 25 7 3.2033 -1.7314 5.9390 26 14 2.0042 -0.0185 7.7579 27 1 0.7993 -0.7009 8.2944 28 1 3.1539 -0.2564 8.6671 29 1 1.7443 1.4403 7.6598 30 1 -0.3633 0.5143 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6953 -0.1933 -2.1399 34 1 3.1293 -0.7425 -1.2389 35 1 1.9456 -2.6971 -2.0982 36 1 0.4194 -2.1314 -1.3715 37 1 1.9869 -4.7560 -1.9198 38 1 3.6102 -4.0309 -1.8319 39 1 4.3095 -5.9279 -0.3271 40 1 1.3971 -6.7801 -0.8006 41 1 3.4405 -6.9722 1.5706 42 1 1.6641 -7.4643 1.6273 43 1 2.0726 -9.1551 -0.2197 44 1 3.8492 -8.6638 -0.2774 45 1 3.2347 -7.0883 -2.9735 46 1 5.9335 -7.2599 -1.3851 47 1 5.5390 -8.1484 -2.9526 48 1 5.1753 -5.9258 -4.1209 49 1 5.5698 -5.0373 -2.5534 50 1 0.4144 -2.1345 1.3674 51 1 1.9380 -2.7020 2.0982 52 1 1.8672 1.0629 2.4454 53 1 0.4700 -0.0344 2.5558 54 1 2.7314 -1.3656 3.5996 55 1 3.5890 -2.1431 6.7280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133341826.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:51 Heat of formation + Delta-G solvation = -7.272323 kcal Electronic energy + Delta-G solvation = -30403.851366 eV Core-core repulsion = 26634.174381 eV Total energy + Delta-G solvation = -3769.676986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.53111 -39.98948 -38.69789 -36.95543 -36.60420 -34.83743 -33.49270 -32.80297 -31.38856 -28.71781 -27.75345 -26.31561 -25.13738 -24.84693 -23.26180 -23.10309 -22.54558 -22.26110 -21.04249 -20.38816 -19.29701 -18.87662 -18.02829 -17.06886 -16.81994 -16.79483 -16.33469 -16.07591 -15.90823 -15.66397 -15.37602 -15.16964 -14.88579 -14.78033 -14.50634 -14.17196 -14.04670 -13.75854 -13.31513 -13.25834 -13.05363 -12.86309 -12.80480 -12.62304 -12.46960 -12.37513 -12.36231 -12.26359 -12.12467 -11.99687 -11.97917 -11.91751 -11.69004 -11.33198 -11.22844 -11.18083 -11.08961 -10.94616 -10.80346 -10.67011 -10.44847 -9.46428 -9.02315 -7.96203 -5.26809 1.42816 1.46148 1.54571 1.78966 2.09580 2.53529 2.91885 3.03033 3.36441 3.55375 3.61921 3.73890 3.84685 3.88328 3.97354 4.01915 4.13643 4.17449 4.21761 4.22804 4.27998 4.33292 4.36669 4.43062 4.44894 4.56456 4.59190 4.63763 4.74490 4.78506 4.80833 4.82879 4.85374 4.86686 4.88527 4.95056 5.04066 5.07824 5.11282 5.12852 5.13792 5.21007 5.27466 5.31719 5.32219 5.33847 5.35793 5.42843 5.46841 5.55026 5.61112 5.65404 6.24110 6.58627 7.29419 7.36687 8.06436 8.28619 9.27182 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003190 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.066332 B = 8774.795133 C =10541.718248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.612 5.612 7 C 0.496 3.504 8 O -0.577 6.577 9 C -0.117 4.117 10 C -0.010 4.010 11 C -0.133 4.133 12 C -0.182 4.182 13 C -0.161 4.161 14 C -0.136 4.136 15 C -0.187 4.187 16 C -0.174 4.174 17 C 0.132 3.868 18 C -0.089 4.089 19 H 0.046 0.954 20 C 0.159 3.841 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.977 3.023 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.265 1.265 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.065 0.935 51 H 0.044 0.956 52 H 0.021 0.979 53 H 0.028 0.972 54 H 0.370 0.630 55 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -6.429 -28.116 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.345 5.345 7 C 0.285 3.715 8 O -0.456 6.456 9 C -0.156 4.156 10 C -0.029 4.029 11 C -0.151 4.151 12 C -0.220 4.220 13 C -0.198 4.198 14 C -0.154 4.154 15 C -0.224 4.224 16 C -0.211 4.211 17 C 0.009 3.991 18 C -0.108 4.108 19 H 0.065 0.935 20 C 0.033 3.967 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.805 3.195 27 H -0.213 1.213 28 H -0.222 1.222 29 H -0.190 1.190 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.095 0.905 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.105 0.895 50 H 0.083 0.917 51 H 0.063 0.937 52 H 0.039 0.961 53 H 0.046 0.954 54 H 0.201 0.799 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.000 -6.574 -27.468 28.403 hybrid contribution 0.379 0.041 2.140 2.173 sum -2.621 -6.534 -25.329 26.289 Atomic orbital electron populations 1.21946 0.94100 1.02054 1.02399 1.21064 0.96850 0.99201 0.92785 0.90526 1.21871 1.00775 0.95255 0.98205 1.22031 1.01685 0.93700 0.84747 1.48287 1.57487 1.21096 1.07630 1.21559 0.76747 0.80605 0.92548 1.90758 1.54822 1.64232 1.35767 1.21731 1.04202 0.96163 0.93529 1.20031 0.95918 0.92081 0.94859 1.22182 0.99462 0.96432 0.96990 1.22687 1.01933 1.05048 0.92289 1.22989 1.02780 0.92093 1.01944 1.22151 0.91815 1.04013 0.97391 1.23039 0.99251 0.97632 1.02462 1.23043 1.01969 0.95722 1.00392 1.21243 0.98977 0.92554 0.86326 1.21524 0.99088 0.94553 0.95681 0.93520 1.20869 0.95874 0.94745 0.85241 1.42687 1.57064 1.37279 1.02034 1.19667 1.22491 1.10585 0.85021 0.90355 1.25672 1.00564 0.98972 1.01982 1.69877 1.37320 1.25933 1.29107 0.85088 0.76665 0.78282 0.79420 1.21347 1.22246 1.18981 0.93665 0.90034 0.92613 0.87090 0.92281 0.86801 0.89655 0.86036 0.86853 0.93489 0.87692 0.91578 0.90739 0.87736 0.88602 0.86025 0.90509 0.87547 0.86879 0.89509 0.91651 0.93717 0.96079 0.95382 0.79877 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.11 71.98 0.58 -2.36 16 2 C -0.08 -1.80 2.71 -10.77 -0.03 -1.83 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -1.94 5.61 30.53 0.17 -1.77 16 5 C 0.10 1.56 5.81 86.22 0.50 2.07 16 6 N -0.61 -16.53 2.98 -819.73 -2.44 -18.97 16 7 C 0.50 14.75 7.39 87.66 0.65 15.40 16 8 O -0.58 -23.86 13.20 -3.02 -0.04 -23.90 16 9 C -0.12 -2.15 3.47 29.85 0.10 -2.05 16 10 C -0.01 -0.21 1.77 -10.79 -0.02 -0.23 16 11 C -0.13 -3.01 4.39 -10.79 -0.05 -3.06 16 12 C -0.18 -5.35 8.79 30.62 0.27 -5.08 16 13 C -0.16 -3.39 9.88 30.62 0.30 -3.08 16 14 C -0.14 -1.95 4.73 -10.80 -0.05 -2.00 16 15 C -0.19 -2.77 10.18 30.62 0.31 -2.46 16 16 C -0.17 -2.21 9.73 30.62 0.30 -1.91 16 17 C 0.13 4.71 5.05 86.36 0.44 5.15 16 18 C -0.09 -3.00 2.15 -10.72 -0.02 -3.02 16 19 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 20 C 0.16 6.66 5.19 86.38 0.45 7.11 16 21 N -0.75 -41.08 5.38 -343.46 -1.85 -42.92 16 22 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 23 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 24 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 25 N -0.97 -64.10 13.06 21.65 0.28 -63.82 16 26 Si 0.98 48.54 29.55 68.60 2.03 50.57 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 H 0.04 1.06 6.57 -2.39 -0.02 1.05 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.13 4.99 -2.39 -0.01 1.12 16 33 H 0.11 1.02 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.07 5.95 -2.38 -0.01 1.05 16 36 H 0.09 1.13 6.70 -2.39 -0.02 1.11 16 37 H 0.12 1.48 7.66 -2.39 -0.02 1.46 16 38 H 0.11 1.63 7.27 -2.38 -0.02 1.61 16 39 H 0.05 1.32 7.39 -2.39 -0.02 1.30 16 40 H 0.11 2.16 8.11 -2.39 -0.02 2.14 16 41 H 0.07 2.35 7.83 -2.39 -0.02 2.33 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 47 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.09 1.24 7.93 -2.38 -0.02 1.22 16 50 H 0.07 2.26 6.69 -2.38 -0.02 2.24 16 51 H 0.04 2.11 6.21 -2.39 -0.01 2.10 16 52 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.03 1.16 6.73 -2.38 -0.02 1.14 16 54 H 0.37 22.32 6.89 -92.71 -0.64 21.68 16 55 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -79.07 414.79 3.41 -75.65 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: 0.22 Total: 40.65 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.21 Total: -17.26 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -4.01 Total: -125.71 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -79.07 3.41 -75.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133341826.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.381 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds