Wall clock time and date at job start Tue Mar 31 2020 18:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47148 * 300.00021 * 20 18 17 22 22 C 1.52997 * 109.46986 * 179.97438 * 21 20 18 23 23 C 1.53004 * 109.47048 * 60.00332 * 22 21 20 24 24 C 1.53004 * 109.47080 * 59.99631 * 23 22 21 25 25 C 1.52994 * 109.46972 * 300.00067 * 24 23 22 26 26 C 1.52990 * 109.47131 * 300.00112 * 21 20 18 27 27 C 1.52995 * 109.47539 * 300.00013 * 25 24 23 28 28 C 1.52995 * 109.47299 * 179.97438 * 20 18 17 29 29 C 1.52998 * 109.47479 * 180.02562 * 28 20 18 30 30 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 32 32 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 33 33 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 34 34 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 38 38 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 39 39 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 40 40 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 41 41 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 42 42 H 1.09008 * 109.47099 * 60.00248 * 21 20 18 43 43 H 1.09000 * 109.47274 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47495 * 300.00432 * 22 21 20 45 45 H 1.09000 * 109.47055 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.46992 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.46838 * 60.00263 * 24 23 22 48 48 H 1.09002 * 109.46985 * 179.97438 * 25 24 23 49 49 H 1.09006 * 109.47463 * 180.02562 * 26 21 20 50 50 H 1.09000 * 109.47322 * 59.99803 * 26 21 20 51 51 H 1.08999 * 109.47128 * 300.00235 * 27 25 24 52 52 H 1.09000 * 109.47446 * 180.02562 * 27 25 24 53 53 H 1.09000 * 109.47152 * 300.00439 * 28 20 18 54 54 H 1.08995 * 109.47076 * 59.99840 * 29 28 20 55 55 H 1.08999 * 109.47221 * 179.97438 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.6798 -1.9826 1.2700 15 1 7.8732 0.2544 1.7452 16 1 7.7258 -1.4731 3.4405 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 1.7041 -1.8823 3.9315 22 6 2.2139 -2.6041 5.1805 23 6 2.2659 -1.6212 6.3519 24 6 0.8636 -1.0701 6.6179 25 6 0.3539 -0.3483 5.3689 26 6 0.3018 -1.3313 4.1969 27 6 1.2985 0.8051 5.0251 28 6 2.7010 0.2544 4.7588 29 6 3.2110 -0.4668 6.0080 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2618 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.7721 -2.2742 -2.6699 38 1 3.6646 -2.0586 0.2387 39 1 4.4079 -2.8955 1.5989 40 1 2.2489 -1.6318 1.1527 41 1 3.6479 -1.1214 3.3987 42 1 1.6674 -2.5828 3.0970 43 1 1.5407 -3.4255 5.4256 44 1 3.2129 -2.9967 4.9910 45 1 2.6287 -2.1355 7.2418 46 1 0.9008 -0.3695 7.4521 47 1 0.1907 -1.8919 6.8627 48 1 -0.6453 0.0439 5.5582 49 1 -0.3712 -2.1530 4.4422 50 1 -0.0611 -0.8173 3.3068 51 1 1.3356 1.5053 5.8596 52 1 0.9351 1.3196 4.1355 53 1 3.3741 1.0759 4.5137 54 1 4.2099 -0.8594 5.8185 55 1 3.2486 0.2339 6.8421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134602514.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:10 Heat of formation + Delta-G solvation = -72.590167 kcal Electronic energy + Delta-G solvation = -32941.325776 eV Core-core repulsion = 29168.816396 eV Total energy + Delta-G solvation = -3772.509380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.69645 -40.23824 -38.34576 -35.98683 -34.45392 -33.62536 -33.49178 -33.30266 -31.72729 -30.00336 -27.69973 -27.31089 -26.71946 -25.47143 -23.50087 -22.47066 -22.24788 -22.04529 -21.74479 -20.93215 -19.34457 -18.72982 -17.53689 -17.03917 -16.72222 -16.21709 -16.03638 -15.86095 -15.49761 -15.34283 -15.06484 -14.89759 -14.55408 -14.35248 -14.21971 -14.17454 -14.01418 -13.62986 -13.53349 -13.44362 -13.32143 -13.23308 -13.07427 -12.90546 -12.71946 -12.55562 -12.20822 -12.16785 -11.93243 -11.80841 -11.79376 -11.73048 -11.68977 -11.63207 -11.58020 -11.12232 -10.98355 -10.87988 -10.56008 -10.50602 -10.14176 -9.79313 -8.90552 -8.21694 -5.14187 1.55371 1.62934 1.76426 1.88419 2.45449 2.70526 3.50477 3.56089 3.59723 3.63464 3.75440 3.85848 4.07817 4.12581 4.20665 4.21508 4.28777 4.31574 4.34695 4.40699 4.47021 4.47394 4.48942 4.50894 4.60637 4.70365 4.74692 4.77377 4.82978 4.85136 4.87387 4.88701 4.98379 5.00524 5.01804 5.07858 5.11328 5.17236 5.17908 5.18960 5.23300 5.26912 5.30536 5.32716 5.39392 5.51954 5.54957 5.60238 5.63968 5.70735 5.71340 5.82910 6.65672 6.72660 7.23371 7.47944 8.10787 8.24078 9.27587 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.005898 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.842670 B = 4745.965032 C = 6471.258675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.120 4.120 5 C 0.168 3.832 6 H 0.023 0.977 7 C -0.152 4.152 8 N -0.730 5.730 9 C -0.319 4.319 10 H 0.043 0.957 11 C -0.083 4.083 12 N -0.952 5.952 13 Si 1.106 2.894 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.292 1.292 17 N -0.696 5.696 18 C 0.532 3.468 19 O -0.587 6.587 20 C -0.095 4.095 21 C -0.064 4.064 22 C -0.103 4.103 23 C -0.081 4.081 24 C -0.098 4.098 25 C -0.081 4.081 26 C -0.102 4.102 27 C -0.111 4.111 28 C -0.063 4.063 29 C -0.106 4.106 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.360 0.640 39 H 0.247 0.753 40 H 0.396 0.604 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.042 0.958 51 H 0.062 0.938 52 H 0.063 0.937 53 H 0.035 0.965 54 H 0.043 0.957 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 0.255 4.314 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.158 4.158 5 C 0.060 3.940 6 H 0.041 0.959 7 C -0.212 4.212 8 N -0.374 5.374 9 C -0.452 4.452 10 H 0.061 0.939 11 C -0.278 4.278 12 N -0.600 5.600 13 Si 0.936 3.064 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.218 1.218 17 N -0.346 5.346 18 C 0.320 3.680 19 O -0.469 6.469 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.099 4.099 24 C -0.136 4.136 25 C -0.100 4.100 26 C -0.140 4.140 27 C -0.148 4.148 28 C -0.082 4.082 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.195 0.805 39 H 0.058 0.942 40 H 0.232 0.768 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.061 0.939 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.054 0.946 54 H 0.061 0.939 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.308 0.927 5.342 13.450 hybrid contribution -0.154 0.015 -1.534 1.541 sum -12.463 0.942 3.808 13.066 Atomic orbital electron populations 1.22071 0.93735 1.02592 1.02228 1.20881 0.94392 0.95976 0.84593 0.93146 1.22124 0.94692 1.01439 0.97562 1.20400 0.92146 0.94062 0.87440 0.95874 1.22253 0.99994 1.00754 0.98213 1.42471 1.18023 1.40241 1.36698 1.20078 0.95532 1.15307 1.14240 0.93895 1.26349 1.07406 0.97588 0.96430 1.70966 1.14190 1.31012 1.43811 0.82837 0.73095 0.74710 0.75805 1.21658 1.22037 1.21826 1.46026 1.65790 1.13735 1.09071 1.20658 0.75493 0.86547 0.85287 1.90500 1.53095 1.17485 1.85813 1.21265 1.00745 0.97115 0.92519 1.20875 0.94434 0.94489 0.98458 1.21492 1.00842 0.97786 0.93954 1.21068 0.95901 0.95075 0.97890 1.21514 0.95326 1.00075 0.96646 1.21054 0.98687 0.94948 0.95278 1.21542 0.95467 0.99034 0.97942 1.21665 0.93995 0.97701 1.01483 1.20724 0.97748 0.95772 0.93927 1.21561 0.98259 0.97932 0.96644 0.91370 0.94123 0.89806 0.87448 0.90684 0.91136 0.95432 0.93347 0.80550 0.94185 0.76782 0.90368 0.92119 0.89899 0.93549 0.89814 0.91046 0.90271 0.90269 0.89883 0.93876 0.91966 0.91852 0.94626 0.93856 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.48 71.98 0.68 -3.08 16 2 C 0.15 4.70 2.57 44.99 0.12 4.81 16 3 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -3.43 4.43 30.59 0.14 -3.29 16 5 C 0.17 6.32 2.89 44.99 0.13 6.45 16 6 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 7 C -0.15 -5.13 9.49 71.98 0.68 -4.45 16 8 N -0.73 -33.47 3.84 -322.95 -1.24 -34.71 16 9 C -0.32 -17.29 9.93 84.03 0.83 -16.45 16 10 H 0.04 2.43 7.83 -2.91 -0.02 2.41 16 11 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 12 N -0.95 -53.18 13.40 21.65 0.29 -52.89 16 13 Si 1.11 52.61 29.92 68.60 2.05 54.66 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 17 N -0.70 -25.30 3.69 -442.55 -1.63 -26.93 16 18 C 0.53 21.49 5.61 87.65 0.49 21.98 16 19 O -0.59 -26.43 13.32 -3.02 -0.04 -26.47 16 20 C -0.10 -3.62 2.28 -11.54 -0.03 -3.65 16 21 C -0.06 -1.96 2.62 -10.80 -0.03 -1.98 16 22 C -0.10 -2.88 5.19 30.59 0.16 -2.72 16 23 C -0.08 -2.01 3.20 -10.76 -0.03 -2.05 16 24 C -0.10 -2.04 5.19 30.59 0.16 -1.88 16 25 C -0.08 -2.00 3.19 -10.78 -0.03 -2.03 16 26 C -0.10 -2.68 4.98 30.61 0.15 -2.53 16 27 C -0.11 -3.43 4.90 30.60 0.15 -3.28 16 28 C -0.06 -2.22 2.36 -10.79 -0.03 -2.25 16 29 C -0.11 -3.21 5.20 30.63 0.16 -3.05 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.36 16.51 4.54 -92.71 -0.42 16.09 16 39 H 0.25 13.44 6.77 -92.71 -0.63 12.82 16 40 H 0.40 14.59 5.93 -92.71 -0.55 14.04 16 41 H 0.08 3.67 7.85 -2.39 -0.02 3.65 16 42 H 0.06 1.93 7.57 -2.38 -0.02 1.91 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.04 1.26 7.22 -2.39 -0.02 1.24 16 51 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.06 2.32 5.51 -2.39 -0.01 2.31 16 53 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 54 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 55 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -63.86 398.04 3.62 -60.24 By element: Atomic # 1 Polarization: 49.64 SS G_CDS: 0.03 Total: 49.67 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.17 Total: -23.57 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -2.58 Total: -114.53 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.04 Total: -26.47 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -63.86 3.62 -60.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134602514.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.350 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds