Wall clock time and date at job start Tue Mar 31 2020 19:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00122 * 2 1 4 4 H 1.07994 * 120.00085 * 202.16440 * 3 2 1 5 5 C 1.38817 * 119.99813 * 22.15835 * 3 2 1 6 6 N 1.31622 * 119.99870 * 11.27631 * 5 3 2 7 7 Si 1.86801 * 120.00051 * 191.26779 * 5 3 2 8 8 H 1.48501 * 109.46847 * 90.00425 * 7 5 3 9 9 H 1.48501 * 109.47371 * 210.00441 * 7 5 3 10 10 H 1.48498 * 109.47207 * 330.00702 * 7 5 3 11 11 C 1.46495 * 119.99841 * 180.02562 * 2 1 3 12 12 C 1.50706 * 109.46995 * 269.99761 * 11 2 1 13 13 C 1.38219 * 120.00908 * 260.02258 * 12 11 2 14 14 C 1.38212 * 120.03627 * 179.97438 * 13 12 11 15 15 C 1.38328 * 120.04171 * 359.97438 * 14 13 12 16 16 I 2.09495 * 119.99504 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.01332 * 359.75077 * 15 14 13 18 18 C 1.38443 * 120.00604 * 80.00186 * 12 11 2 19 19 F 1.35104 * 120.02207 * 0.02562 * 18 12 11 20 20 H 1.09001 * 109.47203 * 274.48502 * 1 2 3 21 21 H 1.09005 * 109.46661 * 34.48680 * 1 2 3 22 22 H 1.09007 * 109.46981 * 154.48068 * 1 2 3 23 23 H 0.97003 * 119.99859 * 179.97438 * 6 5 3 24 24 H 1.09006 * 109.47053 * 150.00274 * 11 2 1 25 25 H 1.08995 * 109.47635 * 30.00130 * 11 2 1 26 26 H 1.08004 * 119.98588 * 0.02562 * 13 12 11 27 27 H 1.07994 * 119.97966 * 180.02562 * 14 13 12 28 28 H 1.07998 * 120.02364 * 180.26843 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1698 1.2204 -0.3528 5 6 1.5325 2.3437 0.4534 6 7 0.3804 2.2709 1.0856 7 14 2.3373 4.0049 0.1666 8 1 1.8737 4.5622 -1.1295 9 1 1.9649 4.9317 1.2655 10 1 3.8129 3.8413 0.1356 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 3.6825 -1.4841 2.0028 14 6 3.9134 -1.8829 3.3058 15 6 2.9097 -2.5024 4.0285 16 53 3.2614 -3.1071 6.0033 17 6 1.6732 -2.7185 3.4495 18 6 1.4435 -2.3249 2.1420 19 9 0.2371 -2.5406 1.5732 20 1 -0.3634 0.0804 1.0245 21 1 -0.3633 0.8471 -0.5819 22 1 -0.3633 -0.9275 -0.4428 23 1 -0.0507 3.0799 1.4028 24 1 3.1500 -1.1381 -0.5143 25 1 1.6085 -2.0281 -0.5147 26 1 4.4665 -0.9993 1.4399 27 1 4.8776 -1.7100 3.7603 28 1 0.8881 -3.1983 4.0151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140735980.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:57 Heat of formation + Delta-G solvation = 15.616593 kcal Electronic energy + Delta-G solvation = -15195.934194 eV Core-core repulsion = 12407.427398 eV Total energy + Delta-G solvation = -2788.506796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.35182 -38.82160 -35.69173 -32.65316 -30.89842 -30.24280 -28.36600 -25.98900 -25.12895 -22.47355 -21.83615 -20.32819 -16.93911 -16.63265 -15.91791 -15.59110 -15.24430 -14.66793 -13.67999 -13.55534 -13.28840 -13.09016 -12.68305 -12.23668 -11.95215 -11.48377 -11.18945 -10.96128 -10.70797 -10.48769 -10.34428 -10.12101 -10.02402 -9.89233 -9.82682 -8.64715 -8.57700 -8.20216 -6.90076 -5.82827 -3.26903 1.24915 1.37619 1.54259 3.32861 3.38732 3.40519 3.85121 4.42790 4.76699 5.02848 5.23485 5.28244 5.48071 5.59575 5.66131 5.92816 6.02978 6.31219 6.39271 6.47999 6.54483 6.77635 6.87930 7.21572 7.34386 7.67558 7.75228 8.27538 9.11599 9.73042 10.22086 11.20810 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.004285 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.665559 B = 6532.686207 C = 7121.190511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.585 5.585 3 C -0.258 4.258 4 H 0.073 0.927 5 C 0.005 3.995 6 N -0.899 5.899 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.177 3.823 12 C -0.093 4.093 13 C -0.081 4.081 14 C -0.097 4.097 15 C -0.092 4.092 16 I -0.056 7.056 17 C -0.125 4.125 18 C 0.109 3.891 19 F -0.134 7.134 20 H 0.030 0.970 21 H 0.047 0.953 22 H 0.002 0.998 23 H 0.255 0.745 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -12.984 9.040 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.305 5.305 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.543 5.543 7 Si 0.738 3.262 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.050 3.950 12 C -0.099 4.099 13 C -0.102 4.102 14 C -0.118 4.118 15 C -0.234 4.234 16 I 0.094 6.906 17 C -0.147 4.147 18 C 0.087 3.913 19 F -0.112 7.112 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.020 0.980 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.144 0.856 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.476 -13.217 10.405 18.025 hybrid contribution -0.160 1.418 -0.982 1.733 sum 6.315 -11.799 9.423 16.368 Atomic orbital electron populations 1.20881 0.81784 0.95871 0.99598 1.44229 1.02248 1.00128 1.83866 1.19288 0.98386 0.84910 1.36156 0.90960 1.25118 0.97584 0.98804 0.97925 1.70090 1.17381 1.27379 1.39408 0.86202 0.78889 0.83700 0.77437 1.21299 1.21625 1.20319 1.20034 0.97302 0.89061 0.88635 1.21507 0.92174 0.93737 1.02477 1.20896 0.96656 0.98409 0.94201 1.21000 0.98223 0.98104 0.94497 1.23618 0.96554 1.07291 0.95903 1.96663 1.96466 1.90120 1.07380 1.20846 0.96933 1.02860 0.94039 1.17396 0.81588 1.00807 0.91487 1.91481 1.42254 1.92752 1.84748 0.95181 0.93434 0.97970 0.93489 0.91981 0.92789 0.84792 0.85634 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.16 59.85 0.49 4.55 15 2 N -0.59 -14.46 2.91 -182.49 -0.53 -14.99 15 3 C -0.26 -6.86 9.68 -15.06 -0.15 -7.01 15 4 H 0.07 1.85 7.84 -52.49 -0.41 1.43 15 5 C 0.01 0.14 5.13 -17.43 -0.09 0.05 15 6 N -0.90 -25.97 10.57 55.49 0.59 -25.38 15 7 Si 0.91 21.42 29.57 -169.99 -5.03 16.40 15 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 11 C 0.18 3.57 5.56 -5.19 -0.03 3.54 15 12 C -0.09 -1.78 5.47 -104.55 -0.57 -2.35 15 13 C -0.08 -1.36 9.67 -39.60 -0.38 -1.75 15 14 C -0.10 -1.49 9.76 -39.56 -0.39 -1.88 15 15 C -0.09 -1.43 6.20 -39.55 -0.25 -1.67 15 16 I -0.06 -0.70 40.26 -73.02 -2.94 -3.64 15 17 C -0.13 -2.09 9.74 -39.50 -0.38 -2.47 15 18 C 0.11 2.06 7.25 -39.42 -0.29 1.78 15 19 F -0.13 -2.64 15.76 2.25 0.04 -2.61 15 20 H 0.03 0.82 7.41 -51.93 -0.38 0.44 15 21 H 0.05 1.26 7.19 -51.93 -0.37 0.89 15 22 H 0.00 0.04 7.79 -51.92 -0.40 -0.36 15 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 15 24 H 0.06 1.15 7.89 -51.93 -0.41 0.74 15 25 H 0.05 1.02 7.67 -51.93 -0.40 0.62 15 26 H 0.13 2.06 8.04 -52.48 -0.42 1.64 15 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.13 1.96 8.06 -52.49 -0.42 1.54 15 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -28.62 275.25 -8.54 -37.17 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -2.78 Total: -3.89 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.03 Total: -7.20 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.06 Total: -40.37 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 53 Polarization: -0.70 SS G_CDS: -2.94 Total: -3.64 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.62 -8.54 -37.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140735980.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.784 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds