Wall clock time and date at job start Tue Mar 31 2020 19:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00122 * 2 1 4 4 H 1.07994 * 120.00085 * 202.16440 * 3 2 1 5 5 C 1.38817 * 119.99813 * 22.15835 * 3 2 1 6 6 N 1.31622 * 119.99870 * 11.27631 * 5 3 2 7 7 Si 1.86801 * 120.00051 * 191.26779 * 5 3 2 8 8 H 1.48501 * 109.46847 * 90.00425 * 7 5 3 9 9 H 1.48501 * 109.47371 * 210.00441 * 7 5 3 10 10 H 1.48498 * 109.47207 * 330.00702 * 7 5 3 11 11 C 1.46495 * 119.99841 * 180.02562 * 2 1 3 12 12 C 1.50706 * 109.46995 * 269.99761 * 11 2 1 13 13 C 1.38219 * 120.00908 * 260.02258 * 12 11 2 14 14 C 1.38212 * 120.03627 * 179.97438 * 13 12 11 15 15 C 1.38328 * 120.04171 * 359.97438 * 14 13 12 16 16 I 2.09495 * 119.99504 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.01332 * 359.75077 * 15 14 13 18 18 C 1.38443 * 120.00604 * 80.00186 * 12 11 2 19 19 F 1.35104 * 120.02207 * 0.02562 * 18 12 11 20 20 H 1.09001 * 109.47203 * 274.48502 * 1 2 3 21 21 H 1.09005 * 109.46661 * 34.48680 * 1 2 3 22 22 H 1.09007 * 109.46981 * 154.48068 * 1 2 3 23 23 H 0.97003 * 119.99859 * 179.97438 * 6 5 3 24 24 H 1.09006 * 109.47053 * 150.00274 * 11 2 1 25 25 H 1.08995 * 109.47635 * 30.00130 * 11 2 1 26 26 H 1.08004 * 119.98588 * 0.02562 * 13 12 11 27 27 H 1.07994 * 119.97966 * 180.02562 * 14 13 12 28 28 H 1.07998 * 120.02364 * 180.26843 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1698 1.2204 -0.3528 5 6 1.5325 2.3437 0.4534 6 7 0.3804 2.2709 1.0856 7 14 2.3373 4.0049 0.1666 8 1 1.8737 4.5622 -1.1295 9 1 1.9649 4.9317 1.2655 10 1 3.8129 3.8413 0.1356 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 6 3.6825 -1.4841 2.0028 14 6 3.9134 -1.8829 3.3058 15 6 2.9097 -2.5024 4.0285 16 53 3.2614 -3.1071 6.0033 17 6 1.6732 -2.7185 3.4495 18 6 1.4435 -2.3249 2.1420 19 9 0.2371 -2.5406 1.5732 20 1 -0.3634 0.0804 1.0245 21 1 -0.3633 0.8471 -0.5819 22 1 -0.3633 -0.9275 -0.4428 23 1 -0.0507 3.0799 1.4028 24 1 3.1500 -1.1381 -0.5143 25 1 1.6085 -2.0281 -0.5147 26 1 4.4665 -0.9993 1.4399 27 1 4.8776 -1.7100 3.7603 28 1 0.8881 -3.1983 4.0151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140735980.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:56 Heat of formation + Delta-G solvation = 1.281767 kcal Electronic energy + Delta-G solvation = -15196.555799 eV Core-core repulsion = 12407.427398 eV Total energy + Delta-G solvation = -2789.128401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.83763 -40.18018 -37.48296 -34.25334 -32.62931 -31.57675 -29.81298 -27.97424 -26.73107 -23.83578 -23.54750 -21.88008 -18.81164 -18.10777 -17.40559 -17.08804 -16.79145 -16.37992 -15.39241 -15.12042 -14.99012 -14.69814 -14.15367 -13.62806 -13.54651 -13.11042 -12.86331 -12.82603 -12.51948 -12.12079 -12.08254 -11.89139 -11.74207 -11.19938 -10.95387 -10.66648 -9.89788 -9.57470 -8.86527 -7.84205 -5.32847 0.01069 0.04521 0.19850 1.47652 1.48862 1.57214 2.44045 2.56458 3.31623 3.39244 3.72070 3.79432 3.97849 4.00939 4.29162 4.57262 4.61403 4.82232 4.88928 5.00195 5.07643 5.18556 5.30169 5.46677 5.61913 5.69124 5.85109 6.28659 7.10962 7.80473 8.26252 9.19328 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.004285 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.665559 B = 6532.686207 C = 7121.190511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.604 5.604 3 C -0.261 4.261 4 H 0.082 0.918 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.262 1.262 11 C 0.177 3.823 12 C -0.113 4.113 13 C -0.082 4.082 14 C -0.093 4.093 15 C -0.095 4.095 16 I -0.016 7.016 17 C -0.128 4.128 18 C 0.087 3.913 19 F -0.145 7.145 20 H -0.002 1.002 21 H 0.020 0.980 22 H 0.023 0.977 23 H 0.247 0.753 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.150 0.850 27 H 0.154 0.846 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -13.787 9.961 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.325 5.325 3 C -0.391 4.391 4 H 0.100 0.900 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.214 1.214 9 H -0.226 1.226 10 H -0.187 1.187 11 C 0.051 3.949 12 C -0.117 4.117 13 C -0.102 4.102 14 C -0.113 4.113 15 C -0.236 4.236 16 I 0.132 6.868 17 C -0.149 4.149 18 C 0.065 3.935 19 F -0.124 7.124 20 H 0.017 0.983 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.555 -14.073 11.322 19.985 hybrid contribution -0.700 1.440 -1.157 1.976 sum 7.854 -12.633 10.165 18.017 Atomic orbital electron populations 1.20514 0.82710 0.95641 0.97292 1.44281 1.02017 1.01311 1.84892 1.19638 0.98537 0.85850 1.35029 0.89992 1.25846 0.98303 1.02012 0.98510 1.70272 1.19136 1.27417 1.41638 0.85227 0.78762 0.79635 0.76598 1.21390 1.22644 1.18650 1.20095 0.97647 0.87397 0.89769 1.21405 0.93444 0.95425 1.01449 1.21162 0.96239 0.97796 0.95036 1.21319 0.99294 0.96829 0.93880 1.24058 0.95931 1.05770 0.97804 1.96699 1.96231 1.89754 1.04081 1.21030 0.97957 1.02588 0.93350 1.17721 0.81298 1.01886 0.92590 1.91445 1.42950 1.92958 1.85064 0.98342 0.96102 0.95810 0.94401 0.90289 0.91961 0.83216 0.82878 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 8.16 127.77 1.04 10.43 15 2 N -0.60 -29.89 2.91 -731.28 -2.13 -32.02 15 3 C -0.26 -13.80 9.68 84.03 0.81 -12.99 15 4 H 0.08 4.07 7.84 -2.91 -0.02 4.05 15 5 C -0.05 -2.84 5.13 84.86 0.44 -2.41 15 6 N -0.94 -55.75 10.57 21.65 0.23 -55.53 15 7 Si 0.97 44.28 29.57 68.60 2.03 46.31 15 8 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 9 H -0.30 -14.00 7.11 99.48 0.71 -13.30 15 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 11 C 0.18 6.97 5.56 85.64 0.48 7.45 15 12 C -0.11 -4.17 5.47 -19.82 -0.11 -4.28 15 13 C -0.08 -2.59 9.67 22.26 0.22 -2.37 15 14 C -0.09 -2.58 9.76 22.28 0.22 -2.36 15 15 C -0.10 -2.71 6.20 22.29 0.14 -2.57 15 16 I -0.02 -0.37 40.26 -18.82 -0.76 -1.13 15 17 C -0.13 -4.09 9.74 22.32 0.22 -3.87 15 18 C 0.09 3.23 7.25 22.37 0.16 3.39 15 19 F -0.15 -5.78 15.76 44.97 0.71 -5.08 15 20 H 0.00 -0.10 7.41 -2.39 -0.02 -0.12 15 21 H 0.02 1.13 7.19 -2.38 -0.02 1.11 15 22 H 0.02 1.07 7.79 -2.38 -0.02 1.05 15 23 H 0.25 14.34 8.31 -92.71 -0.77 13.57 15 24 H 0.08 2.79 7.89 -2.38 -0.02 2.77 15 25 H 0.06 2.30 7.67 -2.39 -0.02 2.28 15 26 H 0.15 4.19 8.04 -2.91 -0.02 4.17 15 27 H 0.15 3.40 8.06 -2.91 -0.02 3.37 15 28 H 0.14 4.10 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -61.55 275.25 4.86 -56.69 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.17 Total: 0.33 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.61 Total: -9.58 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.90 Total: -87.54 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.71 Total: -5.08 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 53 Polarization: -0.37 SS G_CDS: -0.76 Total: -1.13 kcal Total: -61.55 4.86 -56.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140735980.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.970 kcal (2) G-P(sol) polarization free energy of solvation -61.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds