Wall clock time and date at job start Tue Mar 31 2020 19:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48500 * 109.47168 * 180.28080 * 3 2 1 5 5 H 1.48504 * 109.46890 * 300.27885 * 3 2 1 6 6 H 1.48491 * 109.47063 * 60.27619 * 3 2 1 7 7 C 1.38811 * 120.00132 * 180.27966 * 2 1 3 8 8 H 1.08002 * 119.99666 * 179.72475 * 7 2 1 9 9 N 1.36696 * 119.99985 * 359.71792 * 7 2 1 10 10 C 1.38852 * 119.99687 * 173.36146 * 9 7 2 11 11 C 1.38300 * 120.54285 * 121.66154 * 10 9 7 12 12 Br 1.89101 * 120.23669 * 359.95265 * 11 10 9 13 13 C 1.39935 * 119.53145 * 179.97438 * 11 10 9 14 14 N 1.30714 * 120.70332 * 359.97438 * 13 11 10 15 15 N 1.39882 * 121.16383 * 0.02562 * 14 13 11 16 16 C 1.39890 * 119.80470 * 179.97438 * 15 14 13 17 17 C 1.38922 * 120.07154 * 48.44582 * 16 15 14 18 18 C 1.38103 * 119.92175 * 179.74299 * 17 16 15 19 19 C 1.38297 * 120.07291 * 0.53268 * 18 17 16 20 20 C 1.38296 * 120.15100 * 359.72530 * 19 18 17 21 21 C 1.38094 * 120.07208 * 0.02562 * 20 19 18 22 22 C 1.34828 * 120.38863 * 359.73573 * 15 14 13 23 23 O 1.22031 * 120.34742 * 180.25997 * 22 15 14 24 24 H 0.97004 * 120.00443 * 359.72264 * 1 2 3 25 25 H 0.96999 * 120.00135 * 353.37103 * 9 7 2 26 26 H 1.07999 * 119.65071 * 179.97438 * 13 11 10 27 27 H 1.07996 * 120.04043 * 359.97438 * 17 16 15 28 28 H 1.07997 * 119.96288 * 180.28119 * 18 17 16 29 29 H 1.08000 * 119.92241 * 179.74364 * 19 18 17 30 30 H 1.07999 * 119.96434 * 179.97438 * 20 19 18 31 31 H 1.08007 * 120.03501 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3466 -0.0069 5 1 1.8857 2.3994 -1.2091 6 1 1.8959 2.3935 1.2158 7 6 2.0098 -1.2021 -0.0059 8 1 3.0898 -1.2020 -0.0104 9 7 1.3263 -2.3860 -0.0058 10 6 2.0131 -3.5840 -0.1507 11 6 1.9271 -4.5652 0.8201 12 35 0.8707 -4.2875 2.3638 13 6 2.6277 -5.7649 0.6523 14 7 3.3605 -5.9666 -0.4111 15 7 3.4684 -4.9944 -1.4110 16 6 4.2611 -5.2401 -2.5371 17 6 4.1334 -6.4370 -3.2307 18 6 4.9139 -6.6741 -4.3451 19 6 5.8295 -5.7262 -4.7643 20 6 5.9630 -4.5359 -4.0730 21 6 5.1820 -4.2902 -2.9609 22 6 2.8089 -3.8238 -1.2981 23 8 2.8997 -2.9781 -2.1731 24 1 -0.4851 0.8400 0.0041 25 1 0.3616 -2.3891 0.0953 26 1 2.5622 -6.5323 1.4094 27 1 3.4220 -7.1796 -2.9010 28 1 4.8119 -7.6024 -4.8874 29 1 6.4415 -5.9159 -5.6337 30 1 6.6792 -3.7979 -4.4028 31 1 5.2870 -3.3606 -2.4212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183768.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:39 Heat of formation + Delta-G solvation = 57.802732 kcal Electronic energy + Delta-G solvation = -20130.780911 eV Core-core repulsion = 16845.615887 eV Total energy + Delta-G solvation = -3285.165024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04448 -39.79120 -38.03551 -37.83020 -35.14012 -33.78260 -32.03858 -31.85476 -30.52834 -29.76286 -27.00253 -25.35766 -24.16308 -23.06274 -22.66837 -20.47546 -19.58469 -18.73052 -17.78590 -17.14856 -16.94050 -16.92955 -16.44109 -15.88130 -15.43140 -15.08279 -14.88447 -14.34170 -13.92031 -13.81325 -13.69514 -13.49577 -13.23820 -12.92565 -12.71250 -12.48114 -12.20199 -12.16372 -11.94005 -11.70241 -10.85893 -10.76527 -10.55306 -10.46826 -9.88693 -9.40921 -9.01350 -8.88002 -5.83027 -0.65192 0.36933 0.44972 1.09965 1.13544 1.32743 1.36736 1.45084 1.49263 2.07053 2.40581 2.76570 2.79501 3.02082 3.72194 4.01882 4.04889 4.23199 4.26371 4.41921 4.52695 4.58570 4.80516 4.90177 4.95487 5.09371 5.28799 5.38807 5.43606 5.55502 5.59151 5.62516 6.08248 6.29676 6.76401 7.02023 7.09310 7.21746 8.18494 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.005639 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.831941 B = 4963.898685 C = 7200.873422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C -0.015 4.015 3 Si 1.006 2.994 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.237 4.237 8 H 0.095 0.905 9 N -0.499 5.499 10 C 0.080 3.920 11 C -0.280 4.280 12 Br -0.051 7.051 13 C 0.173 3.827 14 N -0.329 5.329 15 N -0.386 5.386 16 C 0.132 3.868 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.131 4.131 22 C 0.505 3.495 23 O -0.570 6.570 24 H 0.296 0.704 25 H 0.403 0.597 26 H 0.214 0.786 27 H 0.127 0.873 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -8.992 -0.761 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.223 4.223 3 Si 0.826 3.174 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.370 4.370 8 H 0.113 0.887 9 N -0.103 5.103 10 C -0.051 4.051 11 C -0.379 4.379 12 Br 0.032 6.968 13 C -0.020 4.020 14 N -0.146 5.146 15 N -0.198 5.198 16 C 0.041 3.959 17 C -0.144 4.144 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.128 4.128 21 C -0.152 4.152 22 C 0.299 3.701 23 O -0.450 6.450 24 H 0.107 0.893 25 H 0.241 0.759 26 H 0.230 0.770 27 H 0.145 0.855 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.167 0.833 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.665 -8.624 -1.155 10.382 hybrid contribution -0.911 1.517 0.167 1.777 sum 4.754 -7.107 -0.988 8.607 Atomic orbital electron populations 1.69717 1.07562 1.31568 1.40450 1.26538 0.96738 1.03588 0.95448 0.84668 0.78394 0.75280 0.79048 1.18679 1.19480 1.18068 1.20415 0.93231 0.83368 1.39999 0.88739 1.40677 1.08470 1.02067 1.59054 1.18421 1.01885 0.89223 0.95577 1.21593 1.17471 1.02855 0.96015 1.96410 1.68911 1.97418 1.34101 1.23601 0.89370 0.94686 0.94330 1.75411 1.24918 1.14237 1.00048 1.46581 1.41180 1.13890 1.18172 1.17840 0.93254 0.97185 0.87575 1.21239 1.01317 0.96007 0.95831 1.21422 0.94944 1.00860 0.95000 1.21604 0.98729 0.92759 1.00562 1.21293 0.98790 0.98791 0.93880 1.21128 0.95683 0.98631 0.99754 1.18221 0.81097 0.82525 0.88213 1.90867 1.64986 1.45232 1.43919 0.89318 0.75897 0.77020 0.85457 0.81953 0.81804 0.83319 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.43 13.06 21.65 0.28 -42.15 16 2 C -0.02 -0.74 5.50 84.87 0.47 -0.28 16 3 Si 1.01 38.30 29.55 68.60 2.03 40.33 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.24 -12.16 8.99 84.07 0.76 -11.41 16 8 H 0.09 4.99 7.83 -2.91 -0.02 4.96 16 9 N -0.50 -24.92 4.48 -183.28 -0.82 -25.74 16 10 C 0.08 3.82 6.11 38.90 0.24 4.05 16 11 C -0.28 -11.26 6.28 22.70 0.14 -11.12 16 12 Br -0.05 -1.82 33.09 -20.37 -0.67 -2.50 16 13 C 0.17 6.07 11.07 85.27 0.94 7.02 16 14 N -0.33 -12.76 11.27 -57.05 -0.64 -13.40 16 15 N -0.39 -16.89 3.62 -311.07 -1.12 -18.02 16 16 C 0.13 5.20 5.66 38.18 0.22 5.42 16 17 C -0.12 -3.93 9.72 22.40 0.22 -3.71 16 18 C -0.10 -2.44 10.04 22.25 0.22 -2.21 16 19 C -0.12 -2.60 10.04 22.30 0.22 -2.38 16 20 C -0.11 -3.00 10.04 22.25 0.22 -2.78 16 21 C -0.13 -4.91 8.71 22.40 0.20 -4.71 16 22 C 0.51 25.10 7.19 85.08 0.61 25.71 16 23 O -0.57 -31.52 14.76 -5.42 -0.08 -31.60 16 24 H 0.30 13.33 8.31 -92.71 -0.77 12.56 16 25 H 0.40 20.32 7.98 -92.71 -0.74 19.58 16 26 H 0.21 5.48 8.06 -2.91 -0.02 5.46 16 27 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 31 H 0.10 4.06 7.41 -2.91 -0.02 4.04 16 Total: -1.00 -62.13 302.34 3.87 -58.26 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.45 Total: 31.22 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.46 Total: 3.61 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -2.31 Total: -99.31 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.08 Total: -31.60 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 35 Polarization: -1.82 SS G_CDS: -0.67 Total: -2.50 kcal Total: -62.13 3.87 -58.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183768.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.059 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds