Wall clock time and date at job start Tue Mar 31 2020 17:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99744 * 2 1 4 4 C 1.46900 * 111.00342 * 123.94939 * 2 1 3 5 5 C 1.52998 * 109.46882 * 66.04860 * 4 2 1 6 6 C 1.53000 * 109.47218 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47146 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99950 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00064 * 0.02562 * 8 7 6 10 10 C 1.47426 * 119.99956 * 179.97438 * 8 7 6 11 11 C 1.39980 * 120.60986 * 5.78713 * 10 8 7 12 12 C 1.38325 * 118.36933 * 180.20092 * 11 10 8 13 13 C 1.38382 * 119.50502 * 359.52443 * 12 11 10 14 14 N 1.31840 * 121.21934 * 0.28179 * 13 12 11 15 15 C 1.32436 * 121.77513 * 359.97233 * 14 13 12 16 16 N 1.38266 * 119.82260 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00361 * 354.60720 * 16 15 14 18 18 C 1.52996 * 109.47043 * 180.02562 * 17 16 15 19 19 C 1.53007 * 109.47304 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47256 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00152 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99802 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46775 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47006 * 119.99629 * 24 22 20 27 27 H 1.48495 * 109.47004 * 239.99706 * 24 22 20 28 28 H 1.09001 * 109.47724 * 296.04520 * 1 2 3 29 29 H 1.08997 * 109.47508 * 56.04904 * 1 2 3 30 30 H 1.09004 * 109.47169 * 176.04802 * 1 2 3 31 31 H 1.09002 * 109.47197 * 183.95638 * 3 2 1 32 32 H 1.09001 * 109.47164 * 303.95177 * 3 2 1 33 33 H 1.09002 * 109.47250 * 63.95096 * 3 2 1 34 34 H 1.09007 * 109.47118 * 306.05321 * 4 2 1 35 35 H 1.08994 * 109.47447 * 186.04693 * 4 2 1 36 36 H 1.08998 * 109.47458 * 60.00265 * 5 4 2 37 37 H 1.09008 * 109.47456 * 299.99987 * 5 4 2 38 38 H 1.08999 * 109.47474 * 59.99870 * 6 5 4 39 39 H 1.09003 * 109.46838 * 299.99461 * 6 5 4 40 40 H 0.96999 * 119.99999 * 359.97438 * 7 6 5 41 41 H 1.08003 * 120.81587 * 359.97438 * 11 10 8 42 42 H 1.08001 * 120.24955 * 179.81084 * 12 11 10 43 43 H 1.08000 * 119.38976 * 180.25499 * 13 12 11 44 44 H 0.97001 * 119.99518 * 174.60748 * 16 15 14 45 45 H 1.09000 * 109.46991 * 299.99886 * 17 16 15 46 46 H 1.09003 * 109.46534 * 60.00222 * 17 16 15 47 47 H 1.09007 * 109.47499 * 300.00238 * 18 17 16 48 48 H 1.08996 * 109.47494 * 60.00309 * 18 17 16 49 49 H 1.09003 * 109.46179 * 300.00065 * 19 18 17 50 50 H 1.08996 * 109.47010 * 59.99501 * 19 18 17 51 51 H 0.97002 * 119.99733 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2425 0.9704 6 6 2.1794 -3.0402 2.1556 7 7 1.8314 -4.4542 1.9951 8 6 2.2131 -5.3518 2.9253 9 8 2.8458 -4.9879 3.8978 10 6 1.8625 -6.7747 2.7641 11 6 1.2401 -7.2274 1.5949 12 6 0.9278 -8.5712 1.4945 13 6 1.2447 -9.4242 2.5371 14 7 1.8348 -8.9792 3.6289 15 6 2.1513 -7.7021 3.7794 16 7 2.7691 -7.2792 4.9418 17 6 2.9653 -8.2170 6.0501 18 6 3.6658 -7.5006 7.2064 19 6 3.8713 -8.4801 8.3637 20 6 4.5606 -7.7744 9.5028 21 1 4.8260 -6.7315 9.4105 22 6 4.8525 -8.4599 10.6629 23 7 4.5289 -9.7296 10.7755 24 14 5.7076 -7.5852 12.0747 25 1 5.9625 -6.1713 11.6992 26 1 4.8425 -7.6293 13.2809 27 1 6.9980 -8.2600 12.3661 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3634 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5610 -0.3871 2.0629 35 1 3.0797 -0.6610 1.1756 36 1 2.0659 -2.6213 0.0453 37 1 0.5472 -2.3475 0.9324 38 1 1.7447 -2.6613 3.0806 39 1 3.2637 -2.9353 2.1939 40 1 1.3264 -4.7444 1.2195 41 1 1.0060 -6.5436 0.7924 42 1 0.4445 -8.9527 0.6072 43 1 1.0038 -10.4738 2.4550 44 1 3.0726 -6.3615 5.0235 45 1 1.9978 -8.5893 6.3866 46 1 3.5796 -9.0526 5.7145 47 1 4.6334 -7.1278 6.8702 48 1 3.0513 -6.6652 7.5419 49 1 2.9039 -8.8531 8.7000 50 1 4.4860 -9.3153 8.0280 51 1 4.7346 -10.2120 11.5915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:04 Heat of formation + Delta-G solvation = -4.333033 kcal Electronic energy + Delta-G solvation = -27578.805246 eV Core-core repulsion = 23705.715375 eV Total energy + Delta-G solvation = -3873.089872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.78455 -39.12275 -38.18998 -36.37913 -35.37618 -33.57079 -32.94297 -31.69257 -31.56026 -29.46924 -28.10085 -26.93004 -26.18256 -24.59244 -23.50610 -22.73773 -21.94224 -21.46197 -20.82765 -20.10668 -17.98286 -17.39203 -16.89136 -16.44909 -16.32989 -15.93089 -15.57052 -15.49256 -15.05542 -14.92941 -14.89417 -14.44189 -14.34049 -14.25304 -13.93094 -13.61531 -13.01956 -12.91702 -12.86305 -12.59847 -12.41813 -12.25802 -12.21252 -11.92411 -11.89932 -11.83521 -11.67802 -11.21429 -10.91244 -10.63319 -10.49976 -10.24486 -10.17320 -9.87782 -9.61396 -9.48061 -9.37129 -9.27164 -9.03810 -8.90147 -8.31470 -7.55326 -5.96258 -3.98338 0.75634 1.47254 2.80030 2.83969 3.34089 3.41140 3.45238 3.46324 3.57377 3.95516 4.38579 4.41975 4.49118 4.50785 4.58714 4.62360 4.72806 4.80913 4.87978 4.98604 5.03810 5.07236 5.08553 5.21660 5.23822 5.32399 5.39448 5.39541 5.42245 5.49582 5.64578 5.71626 5.72924 5.87911 5.91251 6.04076 6.12411 6.29890 6.42251 6.47354 6.48075 6.73282 6.82591 7.08959 7.19239 7.45284 7.61389 7.71285 7.84572 8.01770 8.03660 8.45967 8.47218 9.08500 9.65381 11.15113 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.002084 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.638131 B =13431.776703 C =16151.447445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.023 3.977 4 C 0.056 3.944 5 C -0.128 4.128 6 C 0.120 3.880 7 N -0.728 5.728 8 C 0.577 3.423 9 O -0.543 6.543 10 C -0.285 4.285 11 C 0.006 3.994 12 C -0.263 4.263 13 C 0.188 3.812 14 N -0.545 5.545 15 C 0.458 3.542 16 N -0.689 5.689 17 C 0.119 3.881 18 C -0.122 4.122 19 C 0.025 3.975 20 C -0.519 4.519 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.399 0.601 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.158 0.842 44 H 0.424 0.576 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 14.791 -28.349 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.125 4.125 4 C -0.072 4.072 5 C -0.166 4.166 6 C -0.004 4.004 7 N -0.380 5.380 8 C 0.367 3.633 9 O -0.422 6.422 10 C -0.296 4.296 11 C -0.021 4.021 12 C -0.287 4.287 13 C 0.025 3.975 14 N -0.262 5.262 15 C 0.216 3.784 16 N -0.326 5.326 17 C -0.004 4.004 18 C -0.160 4.160 19 C -0.012 4.012 20 C -0.558 4.558 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.175 0.825 44 H 0.274 0.726 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.877 14.134 -27.030 32.062 hybrid contribution -0.228 1.493 0.471 1.582 sum -10.104 15.627 -26.560 32.430 Atomic orbital electron populations 1.22465 0.87334 1.02505 1.00609 1.61973 1.08136 1.14027 1.43058 1.22394 1.00942 0.88537 1.00628 1.22037 1.00737 0.92886 0.91588 1.21788 1.01711 0.94553 0.98595 1.21295 1.00865 0.79779 0.98461 1.45717 1.58540 1.07873 1.25845 1.17958 0.78256 0.85083 0.82036 1.90475 1.41226 1.79938 1.30517 1.19936 1.16889 0.93498 0.99321 1.21344 0.90484 0.95921 0.94323 1.21631 1.10580 0.94168 1.02319 1.22724 0.87948 0.99941 0.86853 1.67485 1.19118 1.13698 1.25938 1.18446 0.86193 0.87827 0.85938 1.46024 1.58069 1.16543 1.11974 1.21676 1.00668 0.92244 0.85808 1.21885 0.98924 0.99967 0.95222 1.19024 0.97235 0.93904 0.91054 1.21275 1.38123 0.96962 0.99392 0.92593 1.25026 0.95992 0.94892 0.98614 1.69982 1.47627 1.08534 1.27257 0.86530 0.79284 0.79846 0.82316 1.19754 1.21036 1.21025 0.95498 0.91361 0.91022 0.91163 0.91260 0.95507 0.94249 0.90197 0.90241 0.91147 0.91291 0.91087 0.76557 0.85337 0.84912 0.82493 0.72579 0.91986 0.91685 0.92790 0.92831 0.96302 0.96254 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.32 60.06 0.56 0.66 16 2 N -0.55 -3.42 5.02 -251.26 -1.26 -4.68 16 3 C 0.02 0.12 9.57 60.07 0.57 0.70 16 4 C 0.06 0.34 4.96 -3.82 -0.02 0.32 16 5 C -0.13 -0.71 5.25 -26.73 -0.14 -0.85 16 6 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 7 N -0.73 -6.42 5.51 -61.38 -0.34 -6.76 16 8 C 0.58 7.58 7.75 -12.52 -0.10 7.48 16 9 O -0.54 -9.05 13.67 5.28 0.07 -8.98 16 10 C -0.28 -3.74 5.91 -104.65 -0.62 -4.35 16 11 C 0.01 0.05 9.63 -38.90 -0.37 -0.32 16 12 C -0.26 -2.37 10.09 -39.50 -0.40 -2.77 16 13 C 0.19 2.12 11.16 -17.49 -0.20 1.92 16 14 N -0.54 -8.42 9.55 -12.20 -0.12 -8.54 16 15 C 0.46 7.41 7.48 -155.18 -1.16 6.25 16 16 N -0.69 -12.42 5.57 -60.23 -0.34 -12.76 16 17 C 0.12 2.33 5.69 -4.04 -0.02 2.31 16 18 C -0.12 -2.70 5.27 -26.73 -0.14 -2.84 16 19 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 20 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 24 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 30 H 0.07 0.33 6.47 -51.93 -0.34 0.00 16 31 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 35 H 0.08 0.47 8.06 -51.93 -0.42 0.06 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.35 6.55 -51.92 -0.34 0.01 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.35 6.61 -40.82 -0.27 2.08 16 41 H 0.13 0.70 6.55 -52.48 -0.34 0.36 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.42 7.85 4.97 -40.92 -0.20 7.65 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 414.19 15.07 6.24 6.24 Total: -1.00 -34.67 414.19 -11.26 -45.93 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.64 Total: 3.05 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.61 Total: -3.99 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -1.31 Total: -59.47 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.67 -11.26 -45.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.598 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds