Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.52239 * 2 1 4 4 C 1.53192 * 109.49364 * 120.07898 * 2 1 3 5 5 N 1.46926 * 108.77820 * 65.31637 * 4 2 1 6 6 C 1.34773 * 120.62904 * 233.58715 * 5 4 2 7 7 O 1.21277 * 120.00553 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99638 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47072 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47080 * 64.99707 * 9 8 6 11 11 C 1.52992 * 117.50219 * 248.62163 * 10 9 8 12 12 C 1.52996 * 60.00186 * 252.50874 * 11 10 9 13 13 C 1.52999 * 109.47345 * 184.99851 * 9 8 6 14 14 C 1.52998 * 117.50026 * 128.61998 * 13 9 8 15 15 C 1.52995 * 60.00033 * 252.51259 * 14 13 9 16 16 C 1.46927 * 118.73580 * 53.60911 * 5 4 2 17 17 C 1.53192 * 108.77318 * 306.38910 * 16 5 4 18 18 C 1.53033 * 109.49842 * 239.91522 * 2 1 3 19 19 H 1.09002 * 109.45686 * 181.39464 * 18 2 1 20 20 C 1.53000 * 109.44919 * 61.43110 * 18 2 1 21 21 N 1.46499 * 109.47082 * 174.93972 * 20 18 2 22 22 C 1.36940 * 120.00261 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99708 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00533 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00142 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47200 * 60.00385 * 26 24 22 28 28 H 1.48505 * 109.47039 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.46991 * 299.99593 * 26 24 22 30 30 H 1.08996 * 109.47372 * 299.92340 * 1 2 3 31 31 H 1.08996 * 109.46993 * 59.92307 * 1 2 3 32 32 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58809 * 305.52972 * 4 2 1 34 34 H 1.09002 * 109.58657 * 185.10958 * 4 2 1 35 35 H 1.08998 * 109.47194 * 299.99510 * 8 6 5 36 36 H 1.09009 * 109.47313 * 60.00139 * 8 6 5 37 37 H 1.08998 * 109.47122 * 305.00204 * 9 8 6 38 38 H 1.09002 * 115.54954 * 34.33680 * 10 9 8 39 39 H 1.09004 * 117.49917 * 359.97438 * 11 10 9 40 40 H 1.08998 * 117.50201 * 145.02334 * 11 10 9 41 41 H 1.08999 * 117.50221 * 252.50638 * 12 11 10 42 42 H 1.09003 * 117.49602 * 107.48723 * 12 11 10 43 43 H 1.09003 * 115.55249 * 274.33432 * 13 9 8 44 44 H 1.08998 * 117.50050 * 0.02562 * 14 13 9 45 45 H 1.09002 * 117.49846 * 145.02309 * 14 13 9 46 46 H 1.09003 * 117.49745 * 252.50775 * 15 14 13 47 47 H 1.08999 * 117.49886 * 107.49434 * 15 14 13 48 48 H 1.08997 * 109.58859 * 66.17990 * 16 5 4 49 49 H 1.09001 * 109.58530 * 186.46228 * 16 5 4 50 50 H 1.09005 * 109.49451 * 174.58740 * 17 16 5 51 51 H 1.08994 * 109.50120 * 294.65354 * 17 16 5 52 52 H 1.09003 * 109.46979 * 294.93724 * 20 18 2 53 53 H 1.08998 * 109.47112 * 54.93862 * 20 18 2 54 54 H 0.96997 * 120.00146 * 359.97438 * 21 20 18 55 55 H 0.97004 * 119.99623 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 1.6514 -2.1381 1.1697 6 6 0.9746 -2.7219 2.1784 7 8 0.6820 -2.0792 3.1643 8 6 0.5824 -4.1738 2.0817 9 6 -0.1695 -4.5845 3.3493 10 6 -1.4884 -3.8135 3.4323 11 6 -1.6255 -2.7649 4.5379 12 6 -2.3913 -4.0857 4.6371 13 6 -0.4584 -6.0863 3.3069 14 6 -0.0538 -6.9182 4.5256 15 6 0.7397 -7.0341 3.2226 16 6 2.0140 -2.9040 -0.0306 17 6 1.5030 -2.1558 -1.2658 18 6 2.0408 -0.7231 -1.2482 19 1 3.1306 -0.7444 -1.2351 20 6 1.5605 0.0170 -2.4982 21 7 2.1476 -0.6029 -3.6886 22 6 1.8587 -0.1071 -4.9320 23 1 1.1977 0.7408 -5.0350 24 6 2.4154 -0.6941 -6.0599 25 7 3.2206 -1.7277 -5.9344 26 14 2.0218 -0.0172 -7.7559 27 1 2.4581 1.3999 -7.8367 28 1 2.7357 -0.8149 -8.7851 29 1 0.5583 -0.0991 -7.9941 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6006 -0.2730 2.1390 34 1 3.1274 -0.6462 1.2982 35 1 -0.0610 -4.3193 1.2140 36 1 1.4783 -4.7859 1.9766 37 1 0.4403 -4.3563 4.2235 38 1 -1.9721 -3.6053 2.4779 39 1 -0.7761 -2.6246 5.2065 40 1 -2.1993 -1.8664 4.3110 41 1 -3.4688 -4.0562 4.4755 42 1 -2.0455 -4.8140 5.3707 43 1 -1.3670 -6.3756 2.7789 44 1 0.4179 -6.3956 5.3577 45 1 -0.6964 -7.7550 4.7996 46 1 0.6192 -7.9471 2.6394 47 1 1.7338 -6.5877 3.1974 48 1 3.0979 -3.0043 -0.0865 49 1 1.5574 -3.8928 0.0151 50 1 1.8482 -2.6629 -2.1669 51 1 0.4133 -2.1360 -1.2543 52 1 0.4736 -0.0386 -2.5581 53 1 1.8684 1.0612 -2.4429 54 1 2.7410 -1.3646 -3.5962 55 1 3.6099 -2.1377 -6.7227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185761687.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -4.405873 kcal Electronic energy + Delta-G solvation = -30168.788640 eV Core-core repulsion = 26399.235953 eV Total energy + Delta-G solvation = -3769.552687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.52284 -39.94726 -38.67935 -36.96631 -36.47209 -34.81229 -33.40668 -32.42591 -31.89397 -28.46282 -28.20193 -26.18482 -25.26106 -24.10020 -23.28836 -23.12038 -22.77138 -22.22304 -21.06785 -20.30524 -19.55745 -18.87863 -18.02278 -16.95142 -16.82747 -16.72366 -16.34899 -16.02249 -15.78726 -15.47738 -15.36521 -15.18733 -15.04456 -14.59950 -14.56137 -14.16957 -13.87474 -13.65995 -13.59780 -13.16927 -13.11726 -12.96754 -12.77015 -12.65292 -12.41117 -12.37252 -12.32710 -12.24503 -12.21461 -12.01990 -11.95386 -11.89493 -11.53263 -11.35437 -11.21161 -11.18582 -11.07414 -10.88768 -10.77125 -10.66179 -10.38589 -9.49579 -8.95540 -7.93573 -5.21052 1.47824 1.50067 1.56210 1.78077 2.10951 2.57127 2.94275 3.05677 3.39693 3.55895 3.64364 3.76366 3.79591 3.87215 3.98576 4.06782 4.12827 4.17052 4.25181 4.26395 4.28798 4.34657 4.37704 4.44706 4.48088 4.52131 4.64981 4.68082 4.73295 4.78647 4.81242 4.83503 4.87358 4.87630 4.90326 4.94700 5.00995 5.09507 5.11613 5.14358 5.17168 5.20123 5.22350 5.25001 5.33330 5.36528 5.37815 5.38314 5.50722 5.55167 5.57694 5.69996 6.29492 6.54486 7.32579 7.36163 8.12954 8.37218 9.29550 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002444 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.363439 B =11452.109833 C =12172.928320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.510 3.490 7 O -0.563 6.563 8 C -0.129 4.129 9 C -0.001 4.001 10 C -0.139 4.139 11 C -0.161 4.161 12 C -0.172 4.172 13 C -0.145 4.145 14 C -0.179 4.179 15 C -0.179 4.179 16 C 0.113 3.887 17 C -0.121 4.121 18 C -0.077 4.077 19 H 0.065 0.935 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.970 3.030 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.019 0.981 53 H 0.012 0.988 54 H 0.376 0.624 55 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -9.017 22.527 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.300 3.700 7 O -0.442 6.442 8 C -0.169 4.169 9 C -0.020 4.020 10 C -0.157 4.157 11 C -0.198 4.198 12 C -0.209 4.209 13 C -0.163 4.163 14 C -0.216 4.216 15 C -0.216 4.216 16 C -0.010 4.010 17 C -0.159 4.159 18 C -0.096 4.096 19 H 0.084 0.916 20 C 0.033 3.967 21 N -0.384 5.384 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.799 3.201 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.037 0.963 53 H 0.030 0.970 54 H 0.209 0.791 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.985 -8.559 22.938 25.459 hybrid contribution 0.197 0.413 -1.379 1.453 sum -6.788 -8.146 21.559 24.025 Atomic orbital electron populations 1.21762 0.94953 1.01505 1.01120 1.21390 0.96446 0.99590 0.93539 0.89666 1.21549 0.99613 0.80925 0.98003 1.48173 1.56079 1.11345 1.18461 1.21087 0.76536 0.90463 0.81920 1.90668 1.55295 1.66280 1.31973 1.21782 1.02812 0.91624 1.00656 1.19966 0.93727 0.91836 0.96472 1.22103 0.97409 1.02375 0.93820 1.22666 1.01996 0.92779 1.02355 1.22998 0.97922 0.99296 1.00711 1.22202 0.99673 0.91203 1.03196 1.23040 1.03969 1.02717 0.91882 1.23033 0.96134 1.01563 1.00859 1.21836 1.01020 0.95406 0.82712 1.21840 1.00946 0.95340 0.97763 1.21164 0.99798 0.95273 0.93391 0.91643 1.20837 0.95413 0.94578 0.85920 1.42545 1.56800 1.37570 1.01515 1.19558 1.22315 1.10600 0.85307 0.91194 1.25490 1.00596 0.99078 1.01308 1.69790 1.36925 1.25769 1.29216 0.85272 0.77548 0.77460 0.79847 1.20642 1.22014 1.20552 0.92764 0.93067 0.93091 0.89819 0.90962 0.87784 0.87252 0.92002 0.89043 0.90133 0.90442 0.88572 0.88455 0.87319 0.89342 0.88078 0.87899 0.88762 0.90528 0.87562 0.91890 0.91840 0.96334 0.97038 0.79138 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.38 71.98 0.60 -2.85 16 2 C -0.09 -2.24 2.72 -10.72 -0.03 -2.27 16 3 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.12 2.80 5.83 86.36 0.50 3.30 16 5 N -0.61 -13.31 2.41 -818.90 -1.97 -15.29 16 6 C 0.51 11.54 7.45 87.66 0.65 12.19 16 7 O -0.56 -15.89 12.90 -3.02 -0.04 -15.93 16 8 C -0.13 -2.14 3.42 29.85 0.10 -2.03 16 9 C 0.00 -0.02 1.82 -10.79 -0.02 -0.04 16 10 C -0.14 -2.63 4.27 -10.80 -0.05 -2.68 16 11 C -0.16 -3.42 8.57 30.59 0.26 -3.16 16 12 C -0.17 -2.89 9.88 30.59 0.30 -2.59 16 13 C -0.14 -1.95 4.81 -10.80 -0.05 -2.00 16 14 C -0.18 -2.21 10.18 30.59 0.31 -1.90 16 15 C -0.18 -2.13 9.67 30.59 0.30 -1.83 16 16 C 0.11 2.31 6.34 86.36 0.55 2.86 16 17 C -0.12 -3.31 4.90 30.67 0.15 -3.16 16 18 C -0.08 -2.31 1.96 -10.77 -0.02 -2.33 16 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 20 C 0.16 6.20 5.18 86.38 0.45 6.65 16 21 N -0.74 -36.84 5.32 -343.46 -1.83 -38.66 16 22 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 23 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.97 -58.01 13.06 21.65 0.28 -57.72 16 26 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.38 6.59 -2.39 -0.02 1.37 16 32 H 0.05 1.33 5.97 -2.39 -0.01 1.32 16 33 H 0.08 2.07 7.01 -2.38 -0.02 2.06 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.55 7.69 -2.39 -0.02 1.53 16 36 H 0.11 1.45 6.92 -2.38 -0.02 1.43 16 37 H 0.06 1.26 7.47 -2.39 -0.02 1.24 16 38 H 0.09 1.81 8.11 -2.39 -0.02 1.80 16 39 H 0.08 1.92 7.85 -2.39 -0.02 1.91 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 44 H 0.09 1.16 8.05 -2.39 -0.02 1.14 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.09 1.12 7.58 -2.39 -0.02 1.10 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.11 1.68 5.93 -2.39 -0.01 1.67 16 50 H 0.06 2.06 7.15 -2.38 -0.02 2.04 16 51 H 0.06 1.79 6.34 -2.39 -0.02 1.77 16 52 H 0.02 0.75 6.74 -2.39 -0.02 0.73 16 53 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 54 H 0.38 19.53 6.85 -92.71 -0.63 18.90 16 55 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -64.94 415.50 4.01 -60.93 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.22 Total: 37.15 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.32 Total: -18.32 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.52 Total: -111.67 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.04 Total: -15.93 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -64.94 4.01 -60.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761687.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.527 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds