Wall clock time and date at job start Tue Mar 31 2020 19:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47144 * 269.99809 * 3 2 1 5 5 H 1.48497 * 109.47121 * 29.99532 * 3 2 1 6 6 H 1.48498 * 109.47061 * 149.99955 * 3 2 1 7 7 C 1.39935 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99855 * 197.88292 * 7 2 1 9 9 C 1.41442 * 119.99998 * 17.88553 * 7 2 1 10 10 C 1.40791 * 120.17388 * 204.43871 * 9 7 2 11 11 C 1.37719 * 120.03975 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41485 * 359.74924 * 11 10 9 13 13 C 1.39898 * 120.35290 * 0.51221 * 12 11 10 14 14 C 1.47848 * 120.02344 * 179.76761 * 13 12 11 15 15 O 1.21570 * 119.99815 * 179.72271 * 14 13 12 16 16 N 1.34780 * 120.00159 * 359.71983 * 14 13 12 17 17 C 1.39379 * 119.99905 * 180.02562 * 16 14 13 18 18 C 1.36147 * 126.26436 * 0.02562 * 17 16 14 19 19 C 1.39728 * 107.85783 * 179.97438 * 18 17 16 20 20 N 1.30838 * 108.44720 * 0.22631 * 19 18 17 21 21 N 1.35814 * 126.26217 * 179.97438 * 17 16 14 22 22 Br 1.85006 * 126.09198 * 0.02562 * 21 17 16 23 23 C 1.39047 * 119.94934 * 359.48601 * 13 12 11 24 24 H 0.96999 * 120.00534 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.97832 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.78978 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.82143 * 180.27489 * 12 11 10 28 28 H 0.96999 * 119.99877 * 359.97438 * 16 14 13 29 29 H 1.07993 * 126.07191 * 359.97438 * 18 17 16 30 30 H 1.08004 * 125.78185 * 179.97438 * 19 18 17 31 31 H 1.07997 * 120.20723 * 180.23222 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6526 0.6999 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3520 -2.4074 -0.3751 10 6 1.8263 -3.6500 0.0866 11 6 1.1858 -4.8123 -0.2813 12 6 0.0716 -4.7690 -1.1006 13 6 -0.4109 -3.5440 -1.5736 14 6 -1.5989 -3.5066 -2.4528 15 8 -2.0208 -2.4414 -2.8595 16 7 -2.2141 -4.6533 -2.8036 17 6 -3.3338 -4.6180 -3.6329 18 6 -3.9110 -3.5031 -4.1597 19 6 -5.0037 -3.9095 -4.9299 20 7 -5.0903 -5.2136 -4.8700 21 7 -4.0482 -5.6896 -4.0642 22 35 -3.7092 -7.4616 -3.6547 23 6 0.2242 -2.3612 -1.2114 24 1 -0.4851 0.8400 0.0004 25 1 2.6929 -3.6916 0.7297 26 1 1.5528 -5.7632 0.0755 27 1 -0.4259 -5.6861 -1.3796 28 1 -1.8772 -5.5032 -2.4795 29 1 -3.5826 -2.4854 -4.0091 30 1 -5.6673 -3.2572 -5.4782 31 1 -0.1470 -1.4130 -1.5711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188667246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:07 Heat of formation + Delta-G solvation = 97.561179 kcal Electronic energy + Delta-G solvation = -19643.073752 eV Core-core repulsion = 16359.632783 eV Total energy + Delta-G solvation = -3283.440969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.25737 -39.31275 -37.22224 -34.74218 -33.82593 -32.87399 -30.69039 -29.62940 -29.50650 -28.63128 -25.47333 -23.54284 -21.71262 -21.26677 -20.74050 -19.42950 -18.40540 -17.57459 -15.99320 -15.61791 -15.59662 -15.06668 -14.76518 -14.19963 -14.17521 -13.62128 -13.38391 -13.19349 -12.77458 -12.64967 -11.80912 -11.63579 -11.32312 -11.30789 -11.21179 -10.94589 -10.83476 -10.74376 -10.59658 -10.12989 -9.85093 -9.34220 -9.31505 -9.14799 -8.11703 -7.77241 -7.67779 -6.92346 -4.54048 -0.37862 1.56314 2.12350 2.68683 2.87326 2.90524 3.01992 3.05362 3.07386 3.65605 3.83645 4.48669 4.55567 4.90546 5.23054 5.44592 5.49770 5.84742 5.90719 6.09812 6.16798 6.41628 6.56741 6.81282 6.84745 6.89196 7.07041 7.20602 7.29552 7.52991 7.58808 7.70990 7.83078 8.01510 8.35410 8.46488 8.67190 8.68901 10.02372 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.003306 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.601859 B = 8468.551233 C = 9657.872769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.099 3.901 10 C -0.208 4.208 11 C -0.092 4.092 12 C -0.223 4.223 13 C -0.126 4.126 14 C 0.574 3.426 15 O -0.505 6.505 16 N -0.652 5.652 17 C 0.337 3.663 18 C -0.274 4.274 19 C 0.074 3.926 20 N -0.282 5.282 21 N -0.388 5.388 22 Br 0.225 6.775 23 C -0.086 4.086 24 H 0.287 0.713 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.412 0.588 29 H 0.186 0.814 30 H 0.194 0.806 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 -10.728 -5.944 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.228 4.228 11 C -0.111 4.111 12 C -0.243 4.243 13 C -0.129 4.129 14 C 0.366 3.634 15 O -0.379 6.379 16 N -0.301 5.301 17 C 0.116 3.884 18 C -0.307 4.307 19 C -0.114 4.114 20 N -0.104 5.104 21 N -0.264 5.264 22 Br 0.230 6.770 23 C -0.106 4.106 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.249 0.751 29 H 0.203 0.797 30 H 0.211 0.789 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.375 -11.496 -6.367 15.069 hybrid contribution 0.841 0.817 0.509 1.279 sum -6.533 -10.679 -5.858 13.822 Atomic orbital electron populations 1.69767 1.07627 1.30076 1.32984 1.25988 0.94807 1.01704 0.92167 0.86231 0.80369 0.80187 0.79566 1.19018 1.20121 1.18512 1.19641 0.98353 0.90964 1.39494 0.89832 1.17592 0.91052 0.92578 0.89135 1.21139 1.03491 0.92656 1.05508 1.20426 0.95693 0.96925 0.98031 1.20294 1.01649 0.94284 1.08052 1.19187 0.95883 0.95816 1.02055 1.19017 0.83187 0.81598 0.79574 1.90648 1.64571 1.29243 1.53425 1.43284 1.26570 1.12219 1.48005 1.18460 0.88493 0.87465 0.93964 1.21828 1.01249 0.99212 1.08456 1.24003 0.97473 0.92157 0.97811 1.77681 1.05891 1.12583 1.14266 1.51874 1.27096 1.01981 1.45471 1.97885 1.93907 0.92717 1.92487 1.21651 0.96337 0.96183 0.96420 0.90205 0.88347 0.88624 0.89422 0.75055 0.79704 0.78935 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.58 10.96 55.55 0.61 -18.97 16 2 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.89 29.60 -169.99 -5.03 12.85 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.46 -11.34 9.05 -37.73 -0.34 -11.68 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.10 2.47 5.57 -106.87 -0.60 1.87 16 10 C -0.21 -4.64 9.78 -38.81 -0.38 -5.02 16 11 C -0.09 -1.84 10.01 -39.72 -0.40 -2.24 16 12 C -0.22 -4.38 9.55 -38.91 -0.37 -4.75 16 13 C -0.13 -2.78 5.87 -105.04 -0.62 -3.39 16 14 C 0.57 11.84 7.74 -12.33 -0.10 11.74 16 15 O -0.51 -11.47 13.46 5.30 0.07 -11.40 16 16 N -0.65 -11.12 5.37 -12.20 -0.07 -11.19 16 17 C 0.34 5.67 7.76 -152.74 -1.19 4.49 16 18 C -0.27 -4.55 9.65 -39.78 -0.38 -4.93 16 19 C 0.07 1.03 12.00 -17.42 -0.21 0.82 16 20 N -0.28 -4.32 12.65 30.60 0.39 -3.93 16 21 N -0.39 -5.93 4.56 31.24 0.14 -5.79 16 22 Br 0.22 2.58 34.64 -68.01 -2.36 0.23 16 23 C -0.09 -2.14 8.24 -38.44 -0.32 -2.46 16 24 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 25 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.09 1.41 6.38 -52.49 -0.33 1.08 16 28 H 0.41 6.06 6.35 -40.82 -0.26 5.80 16 29 H 0.19 3.31 5.83 -52.49 -0.31 3.01 16 30 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.14 3.67 5.74 -52.49 -0.30 3.37 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -27.89 297.58 -8.76 -36.65 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -2.02 Total: 10.96 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -4.98 Total: -13.89 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 1.07 Total: -39.88 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 35 Polarization: 2.58 SS G_CDS: -2.36 Total: 0.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.89 -8.76 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188667246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.207 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds