Wall clock time and date at job start Tue Mar 31 2020 18:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48500 * 109.47494 * 270.00462 * 3 2 1 5 5 H 1.48508 * 109.46748 * 30.00009 * 3 2 1 6 6 H 1.48501 * 109.47130 * 149.99658 * 3 2 1 7 7 C 1.37870 * 119.99850 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.85284 * 359.97438 * 7 2 1 9 9 C 1.53227 * 108.53428 * 128.64234 * 8 7 2 10 10 C 1.52952 * 109.40919 * 54.62924 * 9 8 7 11 11 H 1.09005 * 109.35326 * 56.47218 * 10 9 8 12 12 N 1.46499 * 109.41805 * 176.29492 * 10 9 8 13 13 S 1.65603 * 120.00202 * 237.76242 * 12 10 9 14 14 O 1.42098 * 104.27706 * 49.37676 * 13 12 10 15 15 O 1.42101 * 104.27946 * 177.23897 * 13 12 10 16 16 C 1.81406 * 104.44702 * 293.31022 * 13 12 10 17 17 Cl 1.80296 * 109.47293 * 64.89317 * 16 13 12 18 18 Cl 1.80295 * 109.47184 * 184.89563 * 16 13 12 19 19 Cl 1.80304 * 109.46825 * 304.89120 * 16 13 12 20 20 C 1.52956 * 109.81779 * 296.40429 * 10 9 8 21 21 C 1.51274 * 120.84030 * 179.97438 * 7 2 1 22 22 H 0.96998 * 120.00035 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.62358 * 8.92786 * 8 7 2 24 24 H 1.09004 * 109.62843 * 248.35481 * 8 7 2 25 25 H 1.09002 * 109.48353 * 294.64354 * 9 8 7 26 26 H 1.09006 * 109.48006 * 174.61336 * 9 8 7 27 27 H 0.96997 * 119.99985 * 57.75476 * 12 10 9 28 28 H 1.09005 * 109.48245 * 183.58085 * 20 10 9 29 29 H 1.09007 * 109.47822 * 303.59892 * 20 10 9 30 30 H 1.09000 * 109.61790 * 111.63486 * 21 7 2 31 31 H 1.09010 * 109.63772 * 351.06373 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8223 -3.3822 -1.1357 10 6 3.3394 -3.5066 -0.9855 11 1 3.5728 -3.9117 -0.0008 12 7 3.8588 -4.4068 -2.0180 13 16 4.7099 -5.7598 -1.5851 14 8 3.9001 -6.3820 -0.5969 15 8 4.9886 -6.4081 -2.8185 16 6 6.2361 -5.1169 -0.8448 17 17 5.8381 -4.2133 0.6638 18 17 7.3373 -6.4889 -0.4507 19 17 7.0499 -4.0093 -2.0119 20 6 3.9900 -2.1306 -1.1364 21 6 3.5171 -1.2162 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 0.2036 -2.3408 -0.1594 24 1 1.4204 -3.0196 0.9536 25 1 1.5887 -2.9190 -2.0943 26 1 1.3700 -4.3729 -1.0907 27 1 3.7041 -4.2104 -2.9551 28 1 5.0742 -2.2344 -1.0920 29 1 3.7054 -1.6972 -2.0952 30 1 3.8778 -1.6003 0.9530 31 1 3.8982 -0.2075 -0.1605 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192042772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:52 Heat of formation + Delta-G solvation = -112.328484 kcal Electronic energy + Delta-G solvation = -21408.208077 eV Core-core repulsion = 17735.687716 eV Total energy + Delta-G solvation = -3672.520361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 334.970 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.35548 -38.76773 -38.67554 -37.92777 -37.78615 -37.61457 -35.52463 -33.13720 -31.39229 -29.10131 -28.71982 -23.94721 -23.23299 -21.55855 -20.97094 -19.47566 -18.78464 -18.24658 -17.85191 -17.07254 -16.92683 -16.33741 -16.11149 -15.01580 -14.77073 -14.56466 -14.27412 -14.15969 -14.05869 -13.75869 -13.67893 -13.26550 -13.24951 -13.09870 -12.89044 -12.73345 -12.60221 -12.46600 -12.40855 -12.32706 -12.02572 -11.80939 -11.58046 -11.45032 -10.98741 -10.76867 -10.48129 -10.18243 -8.10949 -6.04494 -1.79655 -0.67572 -0.43667 -0.35775 1.18691 1.42534 1.46932 1.53770 1.98692 2.45524 2.78458 3.17626 3.78802 4.18368 4.27734 4.46164 4.82458 4.96961 5.06346 5.11778 5.30325 5.32693 5.44515 5.66673 5.71641 5.82944 5.85245 6.00301 6.40824 7.02679 7.53484 8.99875 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.004819 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.960689 B = 5808.642036 C = 6302.007383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.252 1.252 7 C -0.495 4.495 8 C 0.005 3.995 9 C -0.106 4.106 10 C 0.156 3.844 11 H 0.087 0.913 12 N -1.073 6.073 13 S 2.633 3.367 14 O -0.909 6.909 15 O -0.912 6.912 16 C -0.403 4.403 17 Cl -0.027 7.027 18 Cl -0.037 7.037 19 Cl -0.021 7.021 20 C -0.116 4.116 21 C -0.017 4.017 22 H 0.261 0.739 23 H 0.029 0.971 24 H 0.002 0.998 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.436 0.564 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.820 -9.898 -4.062 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.177 1.177 7 C -0.514 4.514 8 C -0.033 4.033 9 C -0.146 4.146 10 C 0.050 3.950 11 H 0.105 0.895 12 N -0.839 5.839 13 S 2.707 3.293 14 O -0.899 6.899 15 O -0.901 6.901 16 C -0.557 4.557 17 Cl 0.000 7.000 18 Cl -0.011 7.011 19 Cl 0.005 6.995 20 C -0.155 4.155 21 C -0.056 4.056 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.020 0.980 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.276 0.724 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.711 -10.654 -3.888 18.575 hybrid contribution 0.583 1.743 0.143 1.843 sum 15.294 -8.911 -3.746 18.093 Atomic orbital electron populations 1.69972 1.07683 1.27294 1.52118 1.25557 0.95215 1.01570 0.95063 0.85898 0.79304 0.79971 0.78645 1.19791 1.22603 1.17660 1.20629 0.91268 0.91594 1.47927 1.19355 0.97321 0.93513 0.93148 1.21817 0.93386 0.98813 1.00598 1.21006 0.94993 0.89983 0.88994 0.89515 1.55529 1.65637 1.44701 1.18065 1.05457 0.74302 0.74577 0.74996 1.93702 1.59852 1.72629 1.63668 1.93663 1.84078 1.72117 1.40285 1.42369 1.17947 0.96872 0.98506 1.98892 1.92021 1.74943 1.34154 1.98846 1.66363 1.41630 1.94229 1.98855 1.81187 1.63257 1.56173 1.21968 0.98704 0.94221 1.00628 1.19754 0.94489 0.96220 0.95111 0.92983 0.95204 0.97986 0.92206 0.92858 0.72423 0.91488 0.91463 0.95923 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.59 12.73 21.45 0.27 -52.31 16 2 C 0.02 1.26 5.46 84.65 0.46 1.72 16 3 Si 0.94 40.96 27.27 68.60 1.87 42.83 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.25 -10.33 6.46 99.48 0.64 -9.69 16 7 C -0.49 -24.04 5.51 -16.17 -0.09 -24.13 16 8 C 0.00 0.23 5.97 30.11 0.18 0.41 16 9 C -0.11 -3.98 5.54 30.65 0.17 -3.81 16 10 C 0.16 4.94 1.86 44.96 0.08 5.03 16 11 H 0.09 2.80 5.47 -2.38 -0.01 2.79 16 12 N -1.07 -27.09 5.11 -169.51 -0.87 -27.95 16 13 S 2.63 68.20 4.63 -56.49 -0.26 67.94 16 14 O -0.91 -27.83 17.41 -127.65 -2.22 -30.05 16 15 O -0.91 -24.44 18.08 -127.65 -2.31 -26.75 16 16 C -0.40 -9.42 1.96 113.37 0.22 -9.20 16 17 Cl -0.03 -0.67 24.29 -2.72 -0.07 -0.74 16 18 Cl -0.04 -0.78 28.33 -2.72 -0.08 -0.86 16 19 Cl -0.02 -0.45 27.57 -2.72 -0.07 -0.52 16 20 C -0.12 -3.75 5.23 30.67 0.16 -3.59 16 21 C -0.02 -0.70 5.59 30.12 0.17 -0.53 16 22 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.44 8.72 8.92 -96.75 -0.86 7.86 16 28 H 0.07 1.82 6.75 -2.38 -0.02 1.80 16 29 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.03 1.40 4.78 -2.38 -0.01 1.39 16 Total: -1.00 -57.82 305.23 -2.11 -59.92 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 0.27 Total: 2.60 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 1.36 Total: -34.10 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -0.59 Total: -80.27 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -4.53 Total: -56.80 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.87 Total: 42.83 kcal Atomic # 16 Polarization: 68.20 SS G_CDS: -0.26 Total: 67.94 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.22 Total: -2.12 kcal Total: -57.82 -2.11 -59.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192042772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.405 kcal (2) G-P(sol) polarization free energy of solvation -57.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds