Wall clock time and date at job start Tue Mar 31 2020 18:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48502 * 109.47428 * 270.00204 * 3 2 1 5 5 H 1.48503 * 109.47152 * 30.00592 * 3 2 1 6 6 H 1.48505 * 109.46859 * 150.00339 * 3 2 1 7 7 C 1.37880 * 119.99979 * 180.02562 * 2 1 3 8 8 C 1.51261 * 120.85129 * 179.97438 * 7 2 1 9 9 C 1.53232 * 108.53742 * 231.34838 * 8 7 2 10 10 C 1.52957 * 109.40535 * 305.37165 * 9 8 7 11 11 H 1.09004 * 109.41347 * 303.49313 * 10 9 8 12 12 N 1.46497 * 109.41346 * 183.63314 * 10 9 8 13 13 S 1.65601 * 119.99766 * 118.89354 * 12 10 9 14 14 O 1.42096 * 104.27844 * 182.39585 * 13 12 10 15 15 O 1.42100 * 104.27798 * 310.25002 * 13 12 10 16 16 C 1.81403 * 104.45218 * 66.32442 * 13 12 10 17 17 Cl 1.80296 * 109.46898 * 54.72519 * 16 13 12 18 18 Cl 1.80292 * 109.47192 * 174.72752 * 16 13 12 19 19 Cl 1.80307 * 109.46917 * 294.72966 * 16 13 12 20 20 C 1.52956 * 109.81590 * 63.59834 * 10 9 8 21 21 C 1.51268 * 120.84711 * 359.97438 * 7 2 1 22 22 H 0.96998 * 119.99963 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.62645 * 111.63245 * 8 7 2 24 24 H 1.08999 * 109.62639 * 351.06655 * 8 7 2 25 25 H 1.09003 * 109.47757 * 185.39395 * 9 8 7 26 26 H 1.08993 * 109.48238 * 65.35347 * 9 8 7 27 27 H 0.96994 * 120.00337 * 298.89192 * 12 10 9 28 28 H 1.09002 * 109.48356 * 56.37701 * 20 10 9 29 29 H 1.08997 * 109.48545 * 176.40771 * 20 10 9 30 30 H 1.08997 * 109.63007 * 8.93505 * 21 7 2 31 31 H 1.08998 * 109.62301 * 248.36473 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2166 -0.0011 9 6 3.9902 -2.1308 -1.1361 10 6 3.3395 -3.5068 -0.9850 11 1 3.5738 -3.9124 -0.0008 12 7 3.8577 -4.4066 -2.0184 13 16 4.6773 -5.7792 -1.5861 14 8 5.0692 -6.3578 -2.8233 15 8 5.6456 -5.3285 -0.6488 16 6 3.4307 -6.8117 -0.7670 17 17 2.0190 -7.0348 -1.8660 18 17 4.1462 -8.4191 -0.3736 19 17 2.8881 -6.0070 0.7526 20 6 1.8224 -3.3824 -1.1356 21 6 1.2676 -2.5151 -0.0005 22 1 -0.4850 0.8400 0.0004 23 1 3.8778 -1.6007 0.9531 24 1 3.8981 -0.2079 -0.1605 25 1 5.0743 -2.2345 -1.0913 26 1 3.7055 -1.6974 -2.0947 27 1 3.7209 -4.1986 -2.9559 28 1 1.5890 -2.9192 -2.0943 29 1 1.3701 -4.3730 -1.0908 30 1 0.2035 -2.3408 -0.1595 31 1 1.4203 -3.0194 0.9536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192042773.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:56 Heat of formation + Delta-G solvation = -94.213308 kcal Electronic energy + Delta-G solvation = -21385.649965 eV Core-core repulsion = 17713.915137 eV Total energy + Delta-G solvation = -3671.734828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 334.970 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -37.97249 -37.66600 -37.43749 -36.87447 -36.70970 -36.42929 -33.92261 -31.43609 -29.73989 -28.01211 -27.05723 -22.26677 -21.56637 -20.22438 -19.59177 -18.25566 -17.61814 -17.06246 -16.27757 -15.94032 -15.62441 -14.88101 -14.48110 -13.52110 -13.35242 -13.16279 -12.92240 -12.58740 -12.51699 -12.42767 -12.38457 -12.20387 -12.08545 -11.56877 -11.52337 -11.43202 -11.35559 -11.23720 -10.94626 -10.92839 -10.70134 -10.17575 -9.99995 -9.87964 -9.41486 -9.03498 -8.57180 -8.52927 -6.16796 -4.07909 -0.64614 0.37411 0.62348 0.71857 2.35594 3.11538 3.23267 3.32986 3.34059 3.94537 4.33147 5.07582 5.11837 5.67436 5.71699 5.92449 6.39417 6.44621 6.63074 6.71954 6.89025 6.91323 6.98566 7.10884 7.33860 7.57931 7.64981 7.75425 8.30306 8.89560 9.47790 10.92372 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.004594 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.885275 B = 6093.633648 C = 6481.280369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.491 4.491 8 C -0.016 4.016 9 C -0.112 4.112 10 C 0.146 3.854 11 H 0.087 0.913 12 N -1.079 6.079 13 S 2.619 3.381 14 O -0.910 6.910 15 O -0.889 6.889 16 C -0.400 4.400 17 Cl -0.034 7.034 18 Cl -0.053 7.053 19 Cl -0.019 7.019 20 C -0.119 4.119 21 C 0.014 3.986 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.424 0.576 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -13.235 -3.101 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.510 4.510 8 C -0.054 4.054 9 C -0.152 4.152 10 C 0.041 3.959 11 H 0.104 0.896 12 N -0.844 5.844 13 S 2.691 3.309 14 O -0.900 6.900 15 O -0.878 6.878 16 C -0.553 4.553 17 Cl -0.007 7.007 18 Cl -0.027 7.027 19 Cl 0.007 6.993 20 C -0.159 4.159 21 C -0.024 4.024 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.261 0.739 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 6.679 -13.563 -2.924 15.399 hybrid contribution -0.651 0.550 -0.056 0.854 sum 6.028 -13.014 -2.980 14.648 Atomic orbital electron populations 1.69827 1.06176 1.27043 1.49380 1.24837 0.94696 0.98585 0.94406 0.86679 0.80028 0.83288 0.78491 1.20375 1.21675 1.19092 1.20030 0.89281 0.91515 1.50206 1.19764 0.96734 0.95221 0.93679 1.21947 0.97486 0.94073 1.01727 1.21355 0.96042 0.90359 0.88110 0.89554 1.55822 1.75711 1.35238 1.17638 1.06035 0.74849 0.74619 0.75362 1.93658 1.78589 1.78408 1.39296 1.93714 1.51134 1.77074 1.65890 1.42687 1.09940 1.02592 1.00033 1.98851 1.43579 1.97059 1.61212 1.98835 1.81864 1.27597 1.94415 1.98890 1.90850 1.76417 1.33098 1.22084 0.92046 0.99081 1.02661 1.19337 0.98865 0.92693 0.91533 0.92521 0.96053 0.94631 0.93696 0.92066 0.73944 0.92162 0.94254 0.92033 0.97725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 12.73 55.43 0.71 -23.53 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.89 20.11 27.27 -169.99 -4.64 15.47 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -5.85 6.46 56.52 0.37 -5.49 16 7 C -0.49 -11.98 5.51 -98.93 -0.55 -12.53 16 8 C -0.02 -0.34 5.59 -27.49 -0.15 -0.49 16 9 C -0.11 -2.06 5.54 -26.63 -0.15 -2.21 16 10 C 0.15 2.46 1.90 -67.98 -0.13 2.34 16 11 H 0.09 1.48 5.26 -51.93 -0.27 1.20 16 12 N -1.08 -15.02 5.09 -4.93 -0.03 -15.05 16 13 S 2.62 37.12 4.63 -107.50 -0.50 36.63 16 14 O -0.91 -13.41 18.08 -57.54 -1.04 -14.45 16 15 O -0.89 -14.32 17.47 -57.54 -1.01 -15.32 16 16 C -0.40 -5.29 1.96 101.05 0.20 -5.09 16 17 Cl -0.03 -0.42 27.71 -51.86 -1.44 -1.85 16 18 Cl -0.05 -0.64 28.33 -51.86 -1.47 -2.11 16 19 Cl -0.02 -0.27 24.84 -51.86 -1.29 -1.56 16 20 C -0.12 -2.18 5.39 -26.63 -0.14 -2.33 16 21 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 22 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.76 4.78 -51.93 -0.25 0.52 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.42 4.85 8.92 -34.47 -0.31 4.55 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.64 7.43 -51.93 -0.39 0.25 16 30 H 0.06 1.55 7.07 -51.93 -0.37 1.19 16 31 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -27.18 306.65 -10.12 -37.30 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.87 Total: -1.89 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.18 Total: -18.25 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.68 Total: -38.58 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -2.05 Total: -29.77 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.64 Total: 15.47 kcal Atomic # 16 Polarization: 37.12 SS G_CDS: -0.50 Total: 36.63 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -4.19 Total: -5.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.18 -10.12 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192042773.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.917 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds