Wall clock time and date at job start Tue Mar 31 2020 18:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48502 * 109.47428 * 270.00204 * 3 2 1 5 5 H 1.48503 * 109.47152 * 30.00592 * 3 2 1 6 6 H 1.48505 * 109.46859 * 150.00339 * 3 2 1 7 7 C 1.37880 * 119.99979 * 180.02562 * 2 1 3 8 8 C 1.51261 * 120.85129 * 179.97438 * 7 2 1 9 9 C 1.53232 * 108.53742 * 231.34838 * 8 7 2 10 10 C 1.52957 * 109.40535 * 305.37165 * 9 8 7 11 11 H 1.09004 * 109.41347 * 303.49313 * 10 9 8 12 12 N 1.46497 * 109.41346 * 183.63314 * 10 9 8 13 13 S 1.65601 * 119.99766 * 118.89354 * 12 10 9 14 14 O 1.42096 * 104.27844 * 182.39585 * 13 12 10 15 15 O 1.42100 * 104.27798 * 310.25002 * 13 12 10 16 16 C 1.81403 * 104.45218 * 66.32442 * 13 12 10 17 17 Cl 1.80296 * 109.46898 * 54.72519 * 16 13 12 18 18 Cl 1.80292 * 109.47192 * 174.72752 * 16 13 12 19 19 Cl 1.80307 * 109.46917 * 294.72966 * 16 13 12 20 20 C 1.52956 * 109.81590 * 63.59834 * 10 9 8 21 21 C 1.51268 * 120.84711 * 359.97438 * 7 2 1 22 22 H 0.96998 * 119.99963 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.62645 * 111.63245 * 8 7 2 24 24 H 1.08999 * 109.62639 * 351.06655 * 8 7 2 25 25 H 1.09003 * 109.47757 * 185.39395 * 9 8 7 26 26 H 1.08993 * 109.48238 * 65.35347 * 9 8 7 27 27 H 0.96994 * 120.00337 * 298.89192 * 12 10 9 28 28 H 1.09002 * 109.48356 * 56.37701 * 20 10 9 29 29 H 1.08997 * 109.48545 * 176.40771 * 20 10 9 30 30 H 1.08997 * 109.63007 * 8.93505 * 21 7 2 31 31 H 1.08998 * 109.62301 * 248.36473 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2166 -0.0011 9 6 3.9902 -2.1308 -1.1361 10 6 3.3395 -3.5068 -0.9850 11 1 3.5738 -3.9124 -0.0008 12 7 3.8577 -4.4066 -2.0184 13 16 4.6773 -5.7792 -1.5861 14 8 5.0692 -6.3578 -2.8233 15 8 5.6456 -5.3285 -0.6488 16 6 3.4307 -6.8117 -0.7670 17 17 2.0190 -7.0348 -1.8660 18 17 4.1462 -8.4191 -0.3736 19 17 2.8881 -6.0070 0.7526 20 6 1.8224 -3.3824 -1.1356 21 6 1.2676 -2.5151 -0.0005 22 1 -0.4850 0.8400 0.0004 23 1 3.8778 -1.6007 0.9531 24 1 3.8981 -0.2079 -0.1605 25 1 5.0743 -2.2345 -1.0913 26 1 3.7055 -1.6974 -2.0947 27 1 3.7209 -4.1986 -2.9559 28 1 1.5890 -2.9192 -2.0943 29 1 1.3701 -4.3730 -1.0908 30 1 0.2035 -2.3408 -0.1595 31 1 1.4203 -3.0194 0.9536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192042773.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:55 Heat of formation + Delta-G solvation = -112.273115 kcal Electronic energy + Delta-G solvation = -21386.433097 eV Core-core repulsion = 17713.915137 eV Total energy + Delta-G solvation = -3672.517960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 334.970 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.34639 -38.76021 -38.67449 -37.92649 -37.78443 -37.61135 -35.51872 -33.13353 -31.37504 -29.10172 -28.70255 -23.94878 -23.20538 -21.56825 -20.96329 -19.46463 -18.76749 -18.25457 -17.85248 -17.06091 -16.91943 -16.33033 -16.10428 -15.03555 -14.74324 -14.53188 -14.29082 -14.15580 -14.03574 -13.76011 -13.67468 -13.26769 -13.23564 -13.07780 -12.92606 -12.70045 -12.60652 -12.44506 -12.40195 -12.38340 -12.01113 -11.78695 -11.53764 -11.47842 -10.96642 -10.75475 -10.47276 -10.17326 -8.10640 -6.03829 -1.78748 -0.66886 -0.43147 -0.35761 1.18495 1.43419 1.48275 1.55079 1.98316 2.46641 2.78886 3.18081 3.79189 4.23070 4.26133 4.46236 4.83571 4.99170 5.06409 5.14436 5.31367 5.34318 5.45565 5.67043 5.72594 5.84304 5.85870 6.01331 6.41916 7.03430 7.54315 8.99694 Molecular weight = 334.97amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.004594 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.885275 B = 6093.633648 C = 6481.280369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.496 4.496 8 C -0.022 4.022 9 C -0.113 4.113 10 C 0.154 3.846 11 H 0.087 0.913 12 N -1.073 6.073 13 S 2.634 3.366 14 O -0.912 6.912 15 O -0.906 6.906 16 C -0.404 4.404 17 Cl -0.023 7.023 18 Cl -0.037 7.037 19 Cl -0.028 7.028 20 C -0.108 4.108 21 C 0.010 3.990 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.436 0.564 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.662 -14.261 -3.846 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.515 4.515 8 C -0.060 4.060 9 C -0.152 4.152 10 C 0.048 3.952 11 H 0.105 0.895 12 N -0.839 5.839 13 S 2.707 3.293 14 O -0.901 6.901 15 O -0.896 6.896 16 C -0.558 4.558 17 Cl 0.003 6.997 18 Cl -0.011 7.011 19 Cl -0.001 7.001 20 C -0.148 4.148 21 C -0.028 4.028 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.276 0.724 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 8.266 -14.586 -3.692 17.167 hybrid contribution -1.130 0.718 0.188 1.352 sum 7.136 -13.869 -3.504 15.985 Atomic orbital electron populations 1.69963 1.07596 1.27261 1.52151 1.25534 0.95217 1.01516 0.95063 0.85902 0.79303 0.80038 0.78607 1.19861 1.22575 1.17789 1.20646 0.91096 0.91888 1.47912 1.19807 0.94766 0.96264 0.95174 1.21877 0.98771 0.94066 1.00528 1.21053 0.94726 0.90412 0.88988 0.89469 1.55539 1.75428 1.35056 1.17879 1.05452 0.74506 0.74380 0.74916 1.93662 1.78682 1.78352 1.39444 1.93699 1.52119 1.77479 1.66288 1.42429 1.10107 1.03401 0.99825 1.98858 1.43032 1.97048 1.60725 1.98843 1.81590 1.26326 1.94322 1.98894 1.90902 1.76707 1.33597 1.21878 0.93272 0.99110 1.00520 1.19285 0.97095 0.93274 0.93131 0.93009 0.95873 0.94596 0.91681 0.91512 0.72431 0.92414 0.92302 0.95344 0.97969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.21 12.73 21.45 0.27 -51.94 16 2 C 0.02 1.30 5.46 84.66 0.46 1.76 16 3 Si 0.93 41.21 27.27 68.60 1.87 43.08 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.25 -10.54 6.46 99.48 0.64 -9.90 16 7 C -0.50 -24.08 5.51 -16.17 -0.09 -24.17 16 8 C -0.02 -0.90 5.59 30.10 0.17 -0.73 16 9 C -0.11 -3.86 5.54 30.66 0.17 -3.69 16 10 C 0.15 4.86 1.90 44.96 0.09 4.95 16 11 H 0.09 2.80 5.26 -2.39 -0.01 2.78 16 12 N -1.07 -26.99 5.09 -169.51 -0.86 -27.86 16 13 S 2.63 68.00 4.63 -56.49 -0.26 67.74 16 14 O -0.91 -24.36 18.08 -127.65 -2.31 -26.66 16 15 O -0.91 -26.99 17.47 -127.65 -2.23 -29.22 16 16 C -0.40 -9.79 1.96 113.37 0.22 -9.57 16 17 Cl -0.02 -0.52 27.71 -2.72 -0.08 -0.60 16 18 Cl -0.04 -0.80 28.33 -2.72 -0.08 -0.88 16 19 Cl -0.03 -0.73 24.84 -2.72 -0.07 -0.80 16 20 C -0.11 -3.83 5.39 30.66 0.17 -3.66 16 21 C 0.01 0.47 5.97 30.11 0.18 0.65 16 22 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 23 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.04 1.47 4.78 -2.39 -0.01 1.46 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.44 8.70 8.92 -96.75 -0.86 7.83 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.83 7.43 -2.39 -0.02 1.81 16 30 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -57.30 306.65 -2.11 -59.41 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 0.27 Total: 2.19 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 1.36 Total: -34.46 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -0.59 Total: -79.80 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -4.54 Total: -55.89 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.87 Total: 43.08 kcal Atomic # 16 Polarization: 68.00 SS G_CDS: -0.26 Total: 67.74 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.22 Total: -2.28 kcal Total: -57.30 -2.11 -59.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192042773.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.863 kcal (2) G-P(sol) polarization free energy of solvation -57.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds