Wall clock time and date at job start Tue Mar 31 2020 19:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 119.99940 * 2 1 4 4 H 1.08000 * 119.99889 * 204.69526 * 3 2 1 5 5 C 1.38814 * 119.99694 * 24.69899 * 3 2 1 6 6 N 1.31614 * 120.00376 * 11.11872 * 5 3 2 7 7 Si 1.86800 * 119.99346 * 191.11892 * 5 3 2 8 8 H 1.48492 * 109.47472 * 60.00262 * 7 5 3 9 9 H 1.48506 * 109.46737 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47334 * 299.99393 * 7 5 3 11 11 C 1.46499 * 120.00075 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47341 * 270.00144 * 11 2 1 13 13 C 1.38268 * 119.99028 * 260.22845 * 12 11 2 14 14 C 1.38223 * 120.05675 * 180.27457 * 13 12 11 15 15 C 1.38231 * 120.03810 * 359.74691 * 14 13 12 16 16 C 1.38430 * 119.97818 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.02679 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.99270 * 79.99892 * 12 11 2 19 19 I 2.09501 * 120.01802 * 0.02562 * 18 12 11 20 20 H 1.09003 * 109.46905 * 267.42341 * 1 2 3 21 21 H 1.08994 * 109.47265 * 27.42407 * 1 2 3 22 22 H 1.09003 * 109.47350 * 147.42802 * 1 2 3 23 23 H 0.96998 * 120.00021 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.47064 * 149.99844 * 11 2 1 25 25 H 1.09005 * 109.47055 * 30.00490 * 11 2 1 26 26 H 1.08003 * 119.96962 * 0.02562 * 13 12 11 27 27 H 1.07998 * 119.98050 * 179.77333 * 14 13 12 28 28 H 1.07989 * 120.01013 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1556 1.2287 -0.3908 5 6 1.5508 2.3331 0.5023 6 7 0.4221 2.2462 1.1738 7 14 2.3468 4.0001 0.2252 8 1 2.4549 4.2608 -1.2327 9 1 1.5155 5.0566 0.8562 10 1 3.7024 4.0083 0.8314 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6817 -1.4783 2.0053 14 6 3.9154 -1.8813 3.3067 15 6 2.9148 -2.5051 4.0281 16 6 1.6782 -2.7268 3.4467 17 9 0.6998 -3.3369 4.1507 18 6 1.4448 -2.3221 2.1425 19 53 -0.4256 -2.6571 1.2602 20 1 -0.3633 -0.0462 1.0267 21 1 -0.3633 0.9121 -0.4733 22 1 -0.3634 -0.8660 -0.5533 23 1 0.0035 3.0479 1.5245 24 1 3.1499 -1.1386 -0.5134 25 1 1.6084 -2.0286 -0.5130 26 1 4.4642 -0.9909 1.4426 27 1 4.8801 -1.7083 3.7602 28 1 3.0978 -2.8194 5.0449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235164004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:14 Heat of formation + Delta-G solvation = 27.867942 kcal Electronic energy + Delta-G solvation = -15333.230358 eV Core-core repulsion = 12545.254820 eV Total energy + Delta-G solvation = -2787.975538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.62007 -38.92503 -35.59429 -32.45918 -31.22663 -30.08404 -27.94446 -25.71367 -25.60075 -22.17208 -21.80351 -20.30289 -16.90167 -16.78143 -15.94819 -15.37067 -15.34498 -14.84944 -13.82414 -13.71351 -13.23866 -13.04196 -12.70150 -11.90875 -11.78180 -11.55230 -11.05791 -10.91774 -10.82809 -10.63825 -10.35995 -10.11965 -9.97397 -9.73158 -8.88213 -8.56123 -8.26650 -8.11845 -6.80171 -5.81079 -3.25228 1.42591 1.57917 1.64748 3.34319 3.40056 3.40513 3.91000 4.44724 4.52727 5.05623 5.24066 5.39892 5.56619 5.61425 5.68795 5.98990 6.11949 6.29052 6.39925 6.50546 6.65088 6.90962 6.95666 7.21159 7.41720 7.71286 7.82678 8.33317 9.15221 9.76102 10.26808 11.23107 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.007601 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.708389 B = 3683.064684 C = 4591.106494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.579 5.579 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.895 5.895 7 Si 0.906 3.094 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.166 3.834 12 C -0.024 4.024 13 C -0.117 4.117 14 C -0.078 4.078 15 C -0.176 4.176 16 C 0.123 3.877 17 F -0.136 7.136 18 C -0.131 4.131 19 I -0.029 7.029 20 H 0.034 0.966 21 H 0.049 0.951 22 H 0.009 0.991 23 H 0.255 0.745 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -12.010 1.827 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.298 5.298 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.537 5.537 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.039 3.961 12 C -0.031 4.031 13 C -0.138 4.138 14 C -0.097 4.097 15 C -0.197 4.197 16 C 0.101 3.899 17 F -0.115 7.115 18 C -0.273 4.273 19 I 0.120 6.880 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.202 -12.074 1.256 12.141 hybrid contribution 1.342 1.278 0.968 2.091 sum 1.140 -10.796 2.224 11.081 Atomic orbital electron populations 1.21346 0.81751 0.97248 0.99118 1.44150 1.02241 0.99744 1.83666 1.19209 0.99914 0.85365 1.34416 0.91267 1.25135 0.97780 0.98824 0.97465 1.70068 1.18835 1.27881 1.36942 0.86323 0.78603 0.83598 0.77924 1.20864 1.21562 1.20851 1.20291 0.97496 0.89732 0.88624 1.21131 0.90970 0.89631 1.01418 1.21062 0.97021 1.00498 0.95216 1.21018 0.98412 0.96105 0.94178 1.20875 0.92315 1.05469 1.01030 1.17405 0.86296 0.96952 0.89272 1.91491 1.61221 1.80557 1.78221 1.24190 0.98623 1.08961 0.95537 1.96486 1.15248 1.94849 1.81368 0.94758 0.93195 0.97253 0.93454 0.92064 0.92290 0.85230 0.85379 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.64 7.02 59.84 0.42 4.06 15 2 N -0.58 -14.13 2.90 -182.50 -0.53 -14.66 15 3 C -0.26 -6.86 9.64 -15.06 -0.15 -7.01 15 4 H 0.07 1.77 7.85 -52.49 -0.41 1.35 15 5 C 0.01 0.22 5.08 -17.43 -0.09 0.13 15 6 N -0.89 -25.67 10.76 55.49 0.60 -25.07 15 7 Si 0.91 21.36 29.57 -169.99 -5.03 16.33 15 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 C 0.17 3.37 5.37 -5.20 -0.03 3.34 15 12 C -0.02 -0.47 5.46 -104.62 -0.57 -1.04 15 13 C -0.12 -2.01 9.67 -39.58 -0.38 -2.39 15 14 C -0.08 -1.17 10.04 -39.59 -0.40 -1.57 15 15 C -0.18 -2.73 10.03 -39.51 -0.40 -3.12 15 16 C 0.12 2.21 7.27 -39.40 -0.29 1.92 15 17 F -0.14 -2.41 16.62 2.25 0.04 -2.37 15 18 C -0.13 -2.52 6.20 -39.48 -0.24 -2.76 15 19 I -0.03 -0.52 32.56 -73.02 -2.38 -2.90 15 20 H 0.03 0.88 6.33 -51.93 -0.33 0.55 15 21 H 0.05 1.33 6.88 -51.93 -0.36 0.98 15 22 H 0.01 0.20 6.17 -51.93 -0.32 -0.12 15 23 H 0.26 7.15 8.31 -40.82 -0.34 6.82 15 24 H 0.06 1.16 7.90 -51.93 -0.41 0.75 15 25 H 0.06 1.12 6.66 -51.93 -0.35 0.77 15 26 H 0.13 2.04 8.04 -52.48 -0.42 1.62 15 27 H 0.13 1.48 8.06 -52.49 -0.42 1.05 15 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -28.99 263.79 -8.02 -37.01 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -2.58 Total: -3.87 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.12 Total: -8.45 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.07 Total: -39.73 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 53 Polarization: -0.52 SS G_CDS: -2.38 Total: -2.90 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.99 -8.02 -37.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235164004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.879 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds