Wall clock time and date at job start Tue Mar 31 2020 19:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 119.99940 * 2 1 4 4 H 1.08000 * 119.99889 * 204.69526 * 3 2 1 5 5 C 1.38814 * 119.99694 * 24.69899 * 3 2 1 6 6 N 1.31614 * 120.00376 * 11.11872 * 5 3 2 7 7 Si 1.86800 * 119.99346 * 191.11892 * 5 3 2 8 8 H 1.48492 * 109.47472 * 60.00262 * 7 5 3 9 9 H 1.48506 * 109.46737 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47334 * 299.99393 * 7 5 3 11 11 C 1.46499 * 120.00075 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47341 * 270.00144 * 11 2 1 13 13 C 1.38268 * 119.99028 * 260.22845 * 12 11 2 14 14 C 1.38223 * 120.05675 * 180.27457 * 13 12 11 15 15 C 1.38231 * 120.03810 * 359.74691 * 14 13 12 16 16 C 1.38430 * 119.97818 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.02679 * 179.97438 * 16 15 14 18 18 C 1.38226 * 119.99270 * 79.99892 * 12 11 2 19 19 I 2.09501 * 120.01802 * 0.02562 * 18 12 11 20 20 H 1.09003 * 109.46905 * 267.42341 * 1 2 3 21 21 H 1.08994 * 109.47265 * 27.42407 * 1 2 3 22 22 H 1.09003 * 109.47350 * 147.42802 * 1 2 3 23 23 H 0.96998 * 120.00021 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.47064 * 149.99844 * 11 2 1 25 25 H 1.09005 * 109.47055 * 30.00490 * 11 2 1 26 26 H 1.08003 * 119.96962 * 0.02562 * 13 12 11 27 27 H 1.07998 * 119.98050 * 179.77333 * 14 13 12 28 28 H 1.07989 * 120.01013 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1556 1.2287 -0.3908 5 6 1.5508 2.3331 0.5023 6 7 0.4221 2.2462 1.1738 7 14 2.3468 4.0001 0.2252 8 1 2.4549 4.2608 -1.2327 9 1 1.5155 5.0566 0.8562 10 1 3.7024 4.0083 0.8314 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6817 -1.4783 2.0053 14 6 3.9154 -1.8813 3.3067 15 6 2.9148 -2.5051 4.0281 16 6 1.6782 -2.7268 3.4467 17 9 0.6998 -3.3369 4.1507 18 6 1.4448 -2.3221 2.1425 19 53 -0.4256 -2.6571 1.2602 20 1 -0.3633 -0.0462 1.0267 21 1 -0.3633 0.9121 -0.4733 22 1 -0.3634 -0.8660 -0.5533 23 1 0.0035 3.0479 1.5245 24 1 3.1499 -1.1386 -0.5134 25 1 1.6084 -2.0286 -0.5130 26 1 4.4642 -0.9909 1.4426 27 1 4.8801 -1.7083 3.7602 28 1 3.0978 -2.8194 5.0449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235164004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:13 Heat of formation + Delta-G solvation = 12.707863 kcal Electronic energy + Delta-G solvation = -15333.887748 eV Core-core repulsion = 12545.254820 eV Total energy + Delta-G solvation = -2788.632928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.97576 -40.31250 -37.33540 -34.10209 -32.75557 -31.71017 -29.39023 -27.55622 -27.25286 -23.85715 -23.14873 -21.87049 -18.71135 -18.23407 -17.39343 -16.81919 -16.64052 -16.62413 -15.53120 -15.36894 -14.93230 -14.49729 -14.07324 -13.51916 -13.31294 -13.14524 -12.80714 -12.66889 -12.48255 -12.26794 -12.13581 -11.89401 -11.73387 -11.15704 -10.62291 -10.21845 -9.66561 -9.55094 -8.73290 -7.81019 -5.28982 0.08180 0.23699 0.26230 1.48389 1.50894 1.56653 2.49259 2.62080 3.19565 3.35979 3.81147 3.86540 3.99508 4.27210 4.34135 4.58342 4.71448 4.93246 4.98216 5.06488 5.08433 5.33949 5.42397 5.57033 5.67450 5.84702 5.91525 6.35185 7.16642 7.85909 8.32541 9.22390 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.007601 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.708389 B = 3683.064684 C = 4591.106494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.597 5.597 3 C -0.262 4.262 4 H 0.076 0.924 5 C -0.046 4.046 6 N -0.931 5.931 7 Si 0.966 3.034 8 H -0.278 1.278 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.168 3.832 12 C -0.047 4.047 13 C -0.124 4.124 14 C -0.068 4.068 15 C -0.163 4.163 16 C 0.102 3.898 17 F -0.139 7.139 18 C -0.150 4.150 19 I -0.030 7.030 20 H 0.018 0.982 21 H 0.015 0.985 22 H 0.030 0.970 23 H 0.246 0.754 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.143 0.857 27 H 0.172 0.828 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -12.699 2.634 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.094 0.906 5 C -0.242 4.242 6 N -0.577 5.577 7 Si 0.794 3.206 8 H -0.204 1.204 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.041 3.959 12 C -0.053 4.053 13 C -0.144 4.144 14 C -0.086 4.086 15 C -0.183 4.183 16 C 0.080 3.920 17 F -0.117 7.117 18 C -0.291 4.291 19 I 0.120 6.880 20 H 0.036 0.964 21 H 0.034 0.966 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.189 0.811 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.905 -12.813 2.063 13.117 hybrid contribution 0.786 1.298 0.748 1.692 sum 2.690 -11.515 2.810 12.154 Atomic orbital electron populations 1.21073 0.82397 0.96262 0.97959 1.44169 1.02160 1.00723 1.84775 1.19520 0.99912 0.86413 1.33334 0.90587 1.25808 0.98500 1.01878 0.98037 1.70238 1.20539 1.27836 1.39059 0.85369 0.77791 0.79685 0.77725 1.20445 1.22628 1.19884 1.20304 0.97651 0.88177 0.89762 1.21029 0.92373 0.91508 1.00387 1.21382 0.96519 1.00087 0.96458 1.21481 0.99943 0.94128 0.93089 1.21367 0.91060 1.03528 1.02376 1.17700 0.87351 0.97746 0.89193 1.91483 1.61521 1.80639 1.78098 1.24402 0.98621 1.09651 0.96471 1.96445 1.15492 1.94707 1.81380 0.96406 0.96631 0.95121 0.94449 0.90857 0.91520 0.83921 0.81105 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.30 7.02 127.77 0.90 9.20 15 2 N -0.60 -29.07 2.90 -731.31 -2.12 -31.20 15 3 C -0.26 -13.76 9.64 84.03 0.81 -12.95 15 4 H 0.08 3.79 7.85 -2.91 -0.02 3.77 15 5 C -0.05 -2.54 5.08 84.86 0.43 -2.10 15 6 N -0.93 -54.64 10.76 21.65 0.23 -54.41 15 7 Si 0.97 44.11 29.57 68.60 2.03 46.14 15 8 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 15 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 11 C 0.17 6.61 5.37 85.63 0.46 7.08 15 12 C -0.05 -1.74 5.46 -19.86 -0.11 -1.85 15 13 C -0.12 -3.89 9.67 22.27 0.22 -3.68 15 14 C -0.07 -1.75 10.04 22.26 0.22 -1.52 15 15 C -0.16 -4.44 10.03 22.31 0.22 -4.21 15 16 C 0.10 3.46 7.27 22.39 0.16 3.63 15 17 F -0.14 -4.69 16.62 44.97 0.75 -3.95 15 18 C -0.15 -5.57 6.20 22.34 0.14 -5.43 15 19 I -0.03 -1.07 32.56 -18.82 -0.61 -1.68 15 20 H 0.02 0.93 6.33 -2.39 -0.02 0.91 15 21 H 0.01 0.83 6.88 -2.39 -0.02 0.82 15 22 H 0.03 1.33 6.17 -2.39 -0.01 1.32 15 23 H 0.25 14.23 8.31 -92.71 -0.77 13.46 15 24 H 0.07 2.66 7.90 -2.39 -0.02 2.64 15 25 H 0.07 2.47 6.66 -2.38 -0.02 2.46 15 26 H 0.14 4.04 8.04 -2.91 -0.02 4.02 15 27 H 0.17 2.92 8.06 -2.91 -0.02 2.90 15 28 H 0.16 3.35 8.06 -2.92 -0.02 3.33 15 Total: -1.00 -62.41 263.79 4.90 -57.51 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.18 Total: -0.58 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 3.45 Total: -11.85 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.89 Total: -85.60 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 53 Polarization: -1.07 SS G_CDS: -0.61 Total: -1.68 kcal Total: -62.41 4.90 -57.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235164004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -62.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds