Wall clock time and date at job start Tue Mar 31 2020 19:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99426 * 2 1 4 4 H 1.08003 * 119.99790 * 203.04478 * 3 2 1 5 5 C 1.38812 * 120.00636 * 23.03878 * 3 2 1 6 6 N 1.31623 * 119.99565 * 13.05826 * 5 3 2 7 7 Si 1.86796 * 120.00149 * 193.05802 * 5 3 2 8 8 H 1.48494 * 109.47342 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47159 * 120.00118 * 7 5 3 10 10 H 1.48497 * 109.47028 * 240.00107 * 7 5 3 11 11 C 1.46497 * 120.00316 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.46971 * 89.99809 * 11 2 1 13 13 C 1.38226 * 119.98146 * 90.00283 * 12 11 2 14 14 C 1.38446 * 119.98653 * 179.97438 * 13 12 11 15 15 F 1.35096 * 120.02176 * 179.97438 * 14 13 12 16 16 C 1.38472 * 119.95130 * 359.97438 * 14 13 12 17 17 C 1.38224 * 119.97231 * 0.02562 * 16 14 13 18 18 I 2.09503 * 119.99645 * 179.97438 * 17 16 14 19 19 C 1.38209 * 119.98485 * 269.72369 * 12 11 2 20 20 H 1.08999 * 109.47414 * 275.12410 * 1 2 3 21 21 H 1.09004 * 109.47398 * 35.12636 * 1 2 3 22 22 H 1.08994 * 109.46980 * 155.12852 * 1 2 3 23 23 H 0.97000 * 119.99877 * 179.97438 * 6 5 3 24 24 H 1.09005 * 109.46601 * 329.99834 * 11 2 1 25 25 H 1.08999 * 109.47071 * 210.00079 * 11 2 1 26 26 H 1.07995 * 120.00958 * 359.95124 * 13 12 11 27 27 H 1.08007 * 120.00830 * 179.97438 * 16 14 13 28 28 H 1.08001 * 119.98234 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5386 2.3402 0.4704 6 7 0.4129 2.2596 1.1478 7 14 2.3138 4.0077 0.1422 8 1 3.5661 3.8270 -0.6352 9 1 1.3676 4.8496 -0.6331 10 1 2.6239 4.6722 1.4335 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4200 13 6 3.6007 -1.3053 -2.0715 14 6 3.8317 -1.7059 -3.3764 15 9 4.9572 -1.3160 -4.0140 16 6 2.9085 -2.5066 -4.0276 17 6 1.7571 -2.9044 -3.3744 18 53 0.3594 -4.1151 -4.3591 19 6 1.5298 -2.5073 -2.0689 20 1 -0.3634 0.0918 1.0235 21 1 -0.3634 0.8405 -0.5913 22 1 -0.3633 -0.9323 -0.4322 23 1 -0.0139 3.0661 1.4769 24 1 1.6084 -2.0281 0.5148 25 1 3.1499 -1.1380 0.5143 26 1 4.3202 -0.6809 -1.5628 27 1 3.0876 -2.8193 -5.0458 28 1 0.6320 -2.8219 -1.5578 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237376341.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:16 Heat of formation + Delta-G solvation = 13.754830 kcal Electronic energy + Delta-G solvation = -14875.598692 eV Core-core repulsion = 12087.011164 eV Total energy + Delta-G solvation = -2788.587528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.988 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.73011 -39.10724 -35.63346 -32.64100 -31.44363 -30.10781 -27.91837 -26.31663 -25.72399 -22.18442 -22.02695 -20.33997 -17.09871 -16.55767 -16.08103 -16.03662 -15.46114 -14.95107 -13.66729 -13.64459 -13.46583 -13.07907 -12.90214 -12.32752 -11.97571 -11.65100 -11.15577 -10.94574 -10.84896 -10.56267 -10.46070 -10.17505 -10.01809 -9.96325 -9.91015 -8.71778 -8.57557 -8.48082 -6.86492 -5.80020 -3.28274 1.10471 1.20321 1.34631 3.33983 3.41921 3.43504 3.68476 4.42374 4.46510 4.88507 5.16475 5.19478 5.39190 5.51179 5.59494 5.68772 6.03625 6.13758 6.20989 6.32906 6.49841 6.68221 6.83984 7.01064 7.30150 7.65357 7.74415 8.30223 9.14243 9.76172 10.23935 11.24435 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.004349 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.506332 B = 6437.433683 C = 7247.139422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.261 4.261 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.180 3.820 12 C -0.046 4.046 13 C -0.119 4.119 14 C 0.098 3.902 15 F -0.141 7.141 16 C -0.139 4.139 17 C -0.075 4.075 18 I -0.047 7.047 19 C -0.089 4.089 20 H 0.035 0.965 21 H 0.041 0.959 22 H -0.001 1.001 23 H 0.253 0.747 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -15.330 -10.985 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.312 5.312 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.052 3.948 12 C -0.051 4.051 13 C -0.138 4.138 14 C 0.077 3.923 15 F -0.120 7.120 16 C -0.161 4.161 17 C -0.215 4.215 18 I 0.103 6.897 19 C -0.110 4.110 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.017 0.983 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.521 -15.990 -11.587 19.753 hybrid contribution 1.310 1.871 0.110 2.287 sum 0.790 -14.119 -11.477 18.212 Atomic orbital electron populations 1.20851 0.82251 0.95588 0.99682 1.43896 1.01908 1.00070 1.85299 1.19198 0.98335 0.85457 1.36003 0.91319 1.25009 0.97767 0.98545 0.97933 1.70077 1.19392 1.27267 1.38062 0.86202 0.78662 0.84216 0.77579 1.20227 1.21534 1.21597 1.19838 0.97619 0.89308 0.88052 1.21289 0.91221 0.91796 1.00841 1.21245 0.99366 1.00395 0.92843 1.17633 0.84066 0.98903 0.91698 1.91483 1.49126 1.89486 1.81858 1.20796 0.93900 1.00767 1.00649 1.23894 0.97291 1.03438 0.96887 1.96735 1.53127 1.63537 1.76341 1.21055 0.99648 0.97714 0.92614 0.94660 0.94015 0.98272 0.93667 0.92806 0.91745 0.84328 0.84937 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 8.98 59.85 0.54 4.35 15 2 N -0.59 -14.14 2.90 -182.50 -0.53 -14.67 15 3 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 15 4 H 0.07 1.77 7.86 -52.48 -0.41 1.36 15 5 C 0.01 0.17 5.10 -17.43 -0.09 0.08 15 6 N -0.90 -25.74 10.72 55.49 0.59 -25.15 15 7 Si 0.90 21.55 29.57 -169.99 -5.03 16.53 15 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 11 C 0.18 3.43 5.77 -5.20 -0.03 3.40 15 12 C -0.05 -0.78 5.46 -104.64 -0.57 -1.36 15 13 C -0.12 -1.98 9.68 -39.51 -0.38 -2.36 15 14 C 0.10 1.54 7.30 -39.42 -0.29 1.25 15 15 F -0.14 -2.21 17.27 2.25 0.04 -2.17 15 16 C -0.14 -2.00 9.74 -39.50 -0.38 -2.38 15 17 C -0.07 -1.07 6.20 -39.55 -0.25 -1.31 15 18 I -0.05 -0.56 40.26 -73.02 -2.94 -3.50 15 19 C -0.09 -1.38 9.41 -39.56 -0.37 -1.76 15 20 H 0.04 0.90 7.34 -51.93 -0.38 0.52 15 21 H 0.04 1.08 7.35 -51.93 -0.38 0.70 15 22 H 0.00 -0.03 8.03 -51.93 -0.42 -0.44 15 23 H 0.25 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.05 0.93 8.01 -51.93 -0.42 0.52 15 25 H 0.06 1.20 7.98 -51.93 -0.41 0.78 15 26 H 0.14 2.28 8.06 -52.49 -0.42 1.85 15 27 H 0.13 1.66 8.06 -52.48 -0.42 1.24 15 28 H 0.13 1.93 8.06 -52.49 -0.42 1.51 15 LS Contribution 278.40 15.07 4.20 4.20 Total: -1.00 -27.90 278.40 -8.47 -36.36 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -2.83 Total: -4.46 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.97 Total: -7.13 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.06 Total: -39.82 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 53 Polarization: -0.56 SS G_CDS: -2.94 Total: -3.50 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.90 -8.47 -36.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237376341.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.117 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds