Wall clock time and date at job start Tue Mar 31 2020 18:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.52995 * 109.47082 * 119.99836 * 2 1 3 5 5 N 1.46500 * 109.46913 * 175.00108 * 4 2 1 6 6 C 1.36942 * 119.99935 * 180.02562 * 5 4 2 7 7 H 1.07993 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99801 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00458 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99848 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47390 * 59.99901 * 10 8 6 12 12 H 1.48496 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46752 * 299.99931 * 10 8 6 14 14 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 15 15 C 1.46499 * 120.00062 * 300.00045 * 14 2 1 16 16 C 1.34779 * 119.99726 * 119.99799 * 14 2 1 17 17 O 1.21279 * 120.00410 * 359.97438 * 16 14 2 18 18 C 1.50703 * 119.99541 * 179.97438 * 16 14 2 19 19 C 1.53000 * 109.46653 * 179.97438 * 18 16 14 20 20 C 1.52996 * 109.47757 * 294.99999 * 19 18 16 21 21 C 1.52998 * 109.47511 * 180.02562 * 20 19 18 22 22 C 1.52993 * 109.47166 * 59.99985 * 21 20 19 23 23 C 1.52990 * 109.47221 * 60.00179 * 22 21 20 24 24 C 1.53002 * 109.47364 * 299.99743 * 23 22 21 25 25 C 1.52999 * 109.47143 * 300.00224 * 20 19 18 26 26 C 1.52992 * 109.47140 * 300.00129 * 24 23 22 27 27 C 1.52999 * 109.47228 * 59.99680 * 26 24 23 28 28 C 1.53001 * 109.47206 * 299.99837 * 27 26 24 29 29 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 31 31 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 32 32 H 1.08995 * 109.47154 * 295.00093 * 4 2 1 33 33 H 1.09000 * 109.47200 * 55.00483 * 4 2 1 34 34 H 0.96997 * 120.00014 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00823 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47391 * 89.99876 * 15 14 2 37 37 H 1.09001 * 109.46813 * 329.99933 * 15 14 2 38 38 H 1.09004 * 109.47041 * 210.00060 * 15 14 2 39 39 H 1.08996 * 109.47057 * 299.99739 * 18 16 14 40 40 H 1.08996 * 109.47084 * 60.00703 * 18 16 14 41 41 H 1.08998 * 109.47215 * 55.00576 * 19 18 16 42 42 H 1.09008 * 109.46841 * 59.99962 * 20 19 18 43 43 H 1.09005 * 109.47329 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.46604 * 299.99785 * 21 20 19 45 45 H 1.09001 * 109.47272 * 180.02562 * 22 21 20 46 46 H 1.09008 * 109.47126 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.47477 * 60.00078 * 23 22 21 48 48 H 1.08998 * 109.47560 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47326 * 179.97438 * 25 20 19 50 50 H 1.09003 * 109.47202 * 59.99388 * 25 20 19 51 51 H 1.09002 * 109.47764 * 299.99764 * 26 24 23 52 52 H 1.09001 * 109.47631 * 179.97438 * 26 24 23 53 53 H 1.09004 * 109.47608 * 179.97438 * 27 26 24 54 54 H 1.09001 * 109.46948 * 179.97438 * 28 27 26 55 55 H 1.08994 * 109.47080 * 300.00061 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1839 -1.4387 2.2067 7 1 3.6468 -1.8446 3.0512 8 6 5.5674 -1.5378 2.1513 9 7 6.2219 -1.0436 1.1220 10 14 6.5001 -2.3739 3.5372 11 1 6.0443 -3.7817 3.6619 12 1 7.9548 -2.3496 3.2400 13 1 6.2425 -1.6555 4.8111 14 7 2.0184 -0.6906 -1.1962 15 6 1.6645 -2.0932 -1.4281 16 6 2.7932 -0.0355 -2.0833 17 8 3.0858 1.1257 -1.8917 18 6 3.2960 -0.7461 -3.3135 19 6 4.1454 0.2159 -4.1467 20 6 3.2648 1.3533 -4.6678 21 6 4.1140 2.3149 -5.5015 22 6 4.7259 1.5609 -6.6839 23 6 3.6079 0.9829 -7.5537 24 6 2.7586 0.0212 -6.7201 25 6 2.1471 0.7753 -5.5382 26 6 3.6392 -1.1162 -6.1990 27 6 4.7573 -0.5381 -5.3292 28 6 5.6066 0.4234 -6.1628 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4315 35 1 7.1886 -1.1132 1.0830 36 1 0.7376 -2.1444 -1.9994 37 1 1.5296 -2.5968 -0.4709 38 1 2.4630 -2.5818 -1.9864 39 1 3.9018 -1.6022 -3.0165 40 1 2.4485 -1.0890 -3.9070 41 1 4.9417 0.6276 -3.5267 42 1 2.8286 1.8902 -3.8254 43 1 3.4867 3.1255 -5.8724 44 1 4.9105 2.7267 -4.8818 45 1 5.3312 2.2459 -7.2776 46 1 4.0438 0.4461 -8.3963 47 1 2.9804 1.7932 -7.9250 48 1 1.9618 -0.3903 -7.3396 49 1 1.5195 1.5855 -5.9091 50 1 1.5420 0.0899 -4.9446 51 1 4.0752 -1.6534 -7.0413 52 1 3.0343 -1.8011 -5.6048 53 1 5.3844 -1.3485 -4.9575 54 1 6.4028 0.8356 -5.5429 55 1 6.0424 -0.1137 -7.0051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271215730.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:27 Heat of formation + Delta-G solvation = -72.375918 kcal Electronic energy + Delta-G solvation = -31677.616369 eV Core-core repulsion = 27905.116279 eV Total energy + Delta-G solvation = -3772.500089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59367 -40.75360 -37.86692 -35.81466 -34.84137 -33.48807 -33.46569 -33.40873 -31.87175 -29.49555 -27.71205 -27.39466 -26.71154 -25.71638 -24.48191 -22.73489 -22.30791 -22.23837 -21.30901 -19.89529 -19.10339 -18.31585 -17.92221 -17.10830 -16.78123 -16.59708 -15.96084 -15.75598 -15.34300 -15.24655 -15.16624 -15.03175 -14.68414 -14.31943 -14.14385 -14.05045 -13.98541 -13.72915 -13.66234 -13.38930 -13.28427 -13.25502 -13.13566 -12.96798 -12.82315 -12.75603 -12.59655 -12.47999 -12.19151 -11.87284 -11.79315 -11.74396 -11.73698 -11.67781 -11.59831 -11.49316 -10.97916 -10.76976 -10.45745 -10.39991 -10.24488 -9.47579 -9.01207 -7.94537 -5.24871 1.43789 1.47695 1.53910 1.77984 2.17422 2.54307 3.37849 3.54938 3.58609 3.65709 3.75871 3.95363 4.10585 4.15439 4.20016 4.26741 4.29480 4.30698 4.37618 4.41654 4.42847 4.46073 4.48144 4.49255 4.60240 4.62199 4.70613 4.74724 4.77999 4.83070 4.85878 4.90802 4.91953 4.93776 4.99820 5.02808 5.09567 5.15582 5.19251 5.20304 5.23569 5.28275 5.29212 5.31539 5.33061 5.36333 5.45841 5.61423 5.65895 5.72150 5.74441 5.76995 6.24777 6.56271 7.30965 7.36094 8.08193 8.31730 9.28254 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003551 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.260305 B = 7884.199986 C = 9036.886696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.129 3.871 3 H 0.063 0.937 4 C 0.142 3.858 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.078 0.922 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.280 1.280 14 N -0.601 5.601 15 C 0.078 3.922 16 C 0.507 3.493 17 O -0.583 6.583 18 C -0.124 4.124 19 C -0.054 4.054 20 C -0.082 4.082 21 C -0.107 4.107 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.082 4.082 25 C -0.105 4.105 26 C -0.105 4.105 27 C -0.080 4.080 28 C -0.108 4.108 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.069 0.931 53 H 0.063 0.937 54 H 0.042 0.958 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -1.268 -20.171 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.081 0.919 4 C 0.015 3.985 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.095 0.905 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.206 1.206 14 N -0.333 5.333 15 C -0.064 4.064 16 C 0.297 3.703 17 O -0.464 6.464 18 C -0.164 4.164 19 C -0.073 4.073 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.102 4.102 23 C -0.139 4.139 24 C -0.100 4.100 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.099 4.099 28 C -0.145 4.145 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.095 0.905 52 H 0.088 0.912 53 H 0.082 0.918 54 H 0.061 0.939 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.936 -0.774 -19.894 23.212 hybrid contribution 1.387 0.122 1.299 1.904 sum -10.549 -0.652 -18.594 21.388 Atomic orbital electron populations 1.21937 0.91403 1.03551 1.02898 1.21207 0.95957 0.96237 0.84102 0.91886 1.21196 0.84176 0.97788 0.95368 1.42513 1.01980 1.69805 1.24119 1.19623 0.90010 1.28551 0.99686 0.90451 1.25601 0.97478 1.03055 1.00597 1.69870 1.06896 1.52740 1.32477 0.85190 0.77021 0.78679 0.78717 1.19863 1.22364 1.20589 1.47844 1.50475 1.13299 1.21708 1.21896 1.01634 0.80092 1.02765 1.21252 0.77044 0.86713 0.85311 1.90615 1.58699 1.19402 1.77683 1.21828 1.01990 0.99178 0.93378 1.20749 0.96427 0.95076 0.95059 1.21051 0.95998 0.95626 0.97349 1.21510 0.98581 0.97655 0.96747 1.21047 0.96820 0.96517 0.95790 1.21513 0.96386 0.98765 0.97262 1.21052 0.97645 0.95411 0.95891 1.21558 0.96497 0.99636 0.96541 1.21582 0.96248 0.97234 0.99187 1.21073 0.97103 0.97157 0.94567 1.21534 0.97108 0.96598 0.99298 0.90449 0.90491 0.91883 0.95636 0.94537 0.79709 0.94229 0.89601 0.91367 0.90927 0.89420 0.85957 0.95150 0.92867 0.91684 0.94481 0.90826 0.90695 0.91585 0.89513 0.91862 0.92124 0.90499 0.91203 0.91849 0.93912 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.20 71.98 0.66 -2.74 16 2 C 0.13 4.53 2.80 44.99 0.13 4.66 16 3 H 0.06 2.67 6.90 -2.39 -0.02 2.65 16 4 C 0.14 5.83 5.50 86.38 0.48 6.30 16 5 N -0.74 -39.76 5.43 -343.47 -1.87 -41.63 16 6 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 9 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 10 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 N -0.60 -20.00 2.24 -822.57 -1.85 -21.84 16 15 C 0.08 1.96 9.30 127.77 1.19 3.15 16 16 C 0.51 18.75 7.09 87.66 0.62 19.37 16 17 O -0.58 -26.67 13.29 -3.02 -0.04 -26.71 16 18 C -0.12 -3.57 3.02 29.85 0.09 -3.48 16 19 C -0.05 -1.60 1.58 -10.79 -0.02 -1.61 16 20 C -0.08 -2.24 2.46 -10.80 -0.03 -2.27 16 21 C -0.11 -2.70 5.19 30.59 0.16 -2.54 16 22 C -0.08 -1.65 3.19 -10.80 -0.03 -1.69 16 23 C -0.10 -1.58 5.19 30.59 0.16 -1.42 16 24 C -0.08 -1.30 3.19 -10.81 -0.03 -1.34 16 25 C -0.10 -2.14 4.91 30.58 0.15 -1.99 16 26 C -0.11 -1.77 4.92 30.59 0.15 -1.62 16 27 C -0.08 -1.84 2.72 -10.79 -0.03 -1.87 16 28 C -0.11 -2.32 5.19 30.60 0.16 -2.16 16 29 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.40 6.88 -2.39 -0.02 1.38 16 34 H 0.37 22.05 7.06 -92.71 -0.65 21.39 16 35 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.83 6.53 -2.39 -0.02 1.82 16 38 H 0.07 1.76 6.44 -2.38 -0.02 1.74 16 39 H 0.09 2.60 7.40 -2.39 -0.02 2.58 16 40 H 0.12 2.65 4.79 -2.39 -0.01 2.64 16 41 H 0.03 1.17 7.95 -2.39 -0.02 1.15 16 42 H 0.05 1.86 5.95 -2.38 -0.01 1.85 16 43 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.21 6.32 -2.39 -0.02 1.20 16 51 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 52 H 0.07 1.09 6.54 -2.39 -0.02 1.08 16 53 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 54 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -74.80 394.59 3.87 -70.93 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 0.21 Total: 40.48 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.11 Total: -8.65 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -3.43 Total: -125.44 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -74.80 3.87 -70.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271215730.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.448 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds