Wall clock time and date at job start Tue Mar 31 2020 18:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36930 * 119.99895 * 2 1 4 4 H 1.08001 * 119.99791 * 202.34205 * 3 2 1 5 5 C 1.38808 * 120.00231 * 22.34683 * 3 2 1 6 6 N 1.31621 * 119.99998 * 11.34097 * 5 3 2 7 7 Si 1.86803 * 120.00227 * 191.34279 * 5 3 2 8 8 H 1.48508 * 109.46770 * 59.99881 * 7 5 3 9 9 H 1.48502 * 109.47326 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47183 * 300.00015 * 7 5 3 11 11 C 1.46498 * 119.99592 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46706 * 269.99645 * 11 2 1 13 13 C 1.53005 * 109.46964 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47423 * 180.02562 * 13 12 11 15 15 C 1.46496 * 120.00009 * 270.00479 * 14 13 12 16 16 C 1.34784 * 119.99978 * 89.99614 * 14 13 12 17 17 O 1.21277 * 119.99711 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.99898 * 180.02562 * 16 14 13 19 19 C 1.50695 * 109.47098 * 180.02562 * 18 16 14 20 20 C 1.34859 * 125.96656 * 124.99792 * 19 18 16 21 21 N 1.36310 * 106.68778 * 180.02562 * 20 19 18 22 22 C 1.35417 * 107.40355 * 0.04228 * 21 20 19 23 23 N 1.30101 * 108.62792 * 359.94315 * 22 21 20 24 24 C 1.51043 * 123.98656 * 179.97438 * 22 21 20 25 25 C 1.53394 * 108.24456 * 344.02008 * 24 22 21 26 26 C 1.53220 * 109.20528 * 48.78741 * 25 24 22 27 27 C 1.46472 * 127.77380 * 180.02562 * 21 20 19 28 28 H 1.08993 * 109.47133 * 274.21265 * 1 2 3 29 29 H 1.09007 * 109.46593 * 34.21132 * 1 2 3 30 30 H 1.09000 * 109.46898 * 154.20880 * 1 2 3 31 31 H 0.97004 * 119.99827 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47043 * 150.00599 * 11 2 1 33 33 H 1.08995 * 109.47189 * 29.99818 * 11 2 1 34 34 H 1.09000 * 109.47066 * 60.00895 * 12 11 2 35 35 H 1.08995 * 109.47438 * 300.00020 * 12 11 2 36 36 H 1.08996 * 109.47237 * 59.99792 * 13 12 11 37 37 H 1.09002 * 109.46977 * 300.00420 * 13 12 11 38 38 H 1.09008 * 109.46936 * 269.99495 * 15 14 13 39 39 H 1.09001 * 109.47266 * 29.99630 * 15 14 13 40 40 H 1.09002 * 109.47482 * 149.99689 * 15 14 13 41 41 H 1.09002 * 109.47343 * 60.00087 * 18 16 14 42 42 H 1.08999 * 109.46699 * 300.00036 * 18 16 14 43 43 H 1.07998 * 126.65038 * 0.02562 * 20 19 18 44 44 H 1.09000 * 109.71481 * 103.71823 * 24 22 21 45 45 H 1.09000 * 109.71571 * 224.31212 * 24 22 21 46 46 H 1.09000 * 109.51064 * 168.76894 * 25 24 22 47 47 H 1.09000 * 109.50871 * 288.90427 * 25 24 22 48 48 H 1.09003 * 109.45272 * 170.53876 * 26 25 24 49 49 H 1.09001 * 109.44447 * 50.57601 * 26 25 24 50 50 H 1.09002 * 109.58229 * 282.60538 * 27 21 20 51 51 H 1.08994 * 109.58465 * 43.02165 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2690 1.0935 7 14 2.3368 4.0047 0.1688 8 1 2.4916 4.2331 -1.2904 9 1 1.4845 5.0736 0.7489 10 1 3.6721 4.0286 0.8180 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2180 -3.0358 1.4413 14 7 3.4616 -3.4596 2.8223 15 6 4.6819 -3.0367 3.5138 16 6 2.5630 -4.2385 3.4567 17 8 1.5530 -4.5888 2.8841 18 6 2.8134 -4.6739 4.8775 19 6 1.6671 -5.5306 5.3497 20 6 1.7657 -6.7764 5.8565 21 7 0.4979 -7.1801 6.1526 22 6 -0.3379 -6.1689 5.8168 23 7 0.3690 -5.1869 5.3385 24 6 -1.8376 -6.2204 5.9893 25 6 -2.2465 -7.6834 6.2020 26 6 -1.3486 -8.3068 7.2758 27 6 0.0746 -8.4594 6.7268 28 1 -0.3633 0.0755 1.0248 29 1 -0.3633 0.8499 -0.5779 30 1 -0.3633 -0.9253 -0.4471 31 1 -0.0464 3.0776 1.4126 32 1 3.1500 -1.1382 -0.5143 33 1 1.6084 -2.0281 -0.5147 34 1 1.5001 -1.8416 1.9556 35 1 3.0416 -0.9516 1.9559 36 1 4.1703 -2.9049 0.9276 37 1 2.6292 -3.7954 0.9270 38 1 5.4696 -3.7705 3.3424 39 1 4.9992 -2.0668 3.1305 40 1 4.4851 -2.9580 4.5830 41 1 2.8985 -3.7955 5.5172 42 1 3.7388 -5.2481 4.9237 43 1 2.6732 -7.3441 6.0000 44 1 -2.1285 -5.6275 6.8565 45 1 -2.3241 -5.8286 5.0961 46 1 -3.2866 -7.7274 6.5253 47 1 -2.1315 -8.2331 5.2678 48 1 -1.7386 -9.2868 7.5509 49 1 -1.3330 -7.6622 8.1546 50 1 0.0893 -9.2289 5.9550 51 1 0.7496 -8.7378 7.5360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273515508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:28 Heat of formation + Delta-G solvation = 44.454868 kcal Electronic energy + Delta-G solvation = -28799.947113 eV Core-core repulsion = 24928.972843 eV Total energy + Delta-G solvation = -3870.974270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.38923 -39.47179 -36.94693 -36.00859 -35.04248 -33.38591 -32.51577 -31.59595 -30.03919 -29.06099 -27.61672 -26.74652 -25.72558 -24.98838 -24.03590 -22.48881 -22.08169 -20.50416 -20.01720 -19.30411 -18.68177 -17.04595 -16.84106 -16.59379 -16.01369 -15.77362 -15.42686 -14.67221 -14.62636 -14.46899 -14.32968 -14.05565 -13.84483 -13.80207 -13.38302 -13.27044 -12.95665 -12.71052 -12.58543 -12.46946 -12.18576 -12.09335 -11.88612 -11.53953 -11.43351 -11.35739 -11.27637 -11.21915 -10.76905 -10.71814 -10.54547 -10.30033 -9.95372 -9.81962 -9.76576 -9.56108 -9.52558 -9.37214 -8.43610 -8.29549 -8.22968 -6.59559 -5.58415 -3.03740 1.96395 2.62806 3.01792 3.03853 3.44981 3.47174 3.50661 3.52004 4.03811 4.17769 4.24164 4.32520 4.60712 4.69271 4.82747 4.86637 4.95191 4.99247 5.02122 5.20748 5.23166 5.27951 5.33603 5.43343 5.46718 5.51831 5.55610 5.60966 5.64552 5.69366 5.76929 5.80142 5.88438 6.04099 6.22203 6.25220 6.32486 6.44515 6.65445 6.69583 6.89564 6.99465 7.06102 7.13383 7.33636 7.55009 7.71218 7.88392 7.95654 8.20448 8.54104 8.59057 9.37966 10.02452 10.52673 11.46627 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.002284 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.724350 B =12254.474041 C =13159.226659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.604 5.604 3 C -0.250 4.250 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.620 5.620 15 C 0.079 3.921 16 C 0.514 3.486 17 O -0.517 6.517 18 C -0.052 4.052 19 C 0.020 3.980 20 C -0.055 4.055 21 N -0.460 5.460 22 C 0.207 3.793 23 N -0.454 5.454 24 C -0.034 4.034 25 C -0.125 4.125 26 C -0.135 4.135 27 C 0.105 3.895 28 H 0.027 0.973 29 H 0.043 0.957 30 H -0.004 1.004 31 H 0.251 0.749 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.172 0.828 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -25.119 14.880 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.084 0.916 5 C -0.200 4.200 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.004 4.004 14 N -0.355 5.355 15 C -0.065 4.065 16 C 0.300 3.700 17 O -0.391 6.391 18 C -0.093 4.093 19 C -0.110 4.110 20 C -0.187 4.187 21 N -0.144 5.144 22 C -0.056 4.056 23 N -0.172 5.172 24 C -0.073 4.073 25 C -0.163 4.163 26 C -0.172 4.172 27 C -0.018 4.018 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.189 0.811 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.026 -24.559 14.398 28.541 hybrid contribution 1.011 0.269 0.396 1.119 sum 3.037 -24.291 14.794 28.603 Atomic orbital electron populations 1.20774 0.82548 0.95391 0.99229 1.43971 1.01979 1.00718 1.85943 1.19161 0.97842 0.85521 1.35454 0.91554 1.25043 0.97814 0.98430 0.98711 1.70080 1.17861 1.26930 1.40534 0.86344 0.78418 0.84017 0.77781 1.21184 1.21714 1.21077 1.20731 0.95467 0.88132 0.92836 1.22590 1.00184 0.94537 1.01721 1.21568 1.00122 0.97735 0.80988 1.47951 1.21374 1.51133 1.15016 1.21766 0.86535 1.00635 0.97562 1.20367 0.83088 0.78438 0.88070 1.90723 1.26104 1.55098 1.67188 1.19906 0.95450 0.99628 0.94314 1.19982 0.92305 0.93595 1.05088 1.22126 0.87963 0.98116 1.10519 1.45296 1.06634 1.14461 1.47983 1.23290 0.94946 0.84806 1.02523 1.70008 1.02656 1.27027 1.17471 1.20183 0.85821 0.97118 1.04209 1.21690 1.00015 0.95369 0.99265 1.21915 0.93212 1.02783 0.99309 1.21937 0.97231 0.83858 0.98730 0.95476 0.93838 0.98543 0.93834 0.94103 0.94551 0.92301 0.92148 0.91288 0.90612 0.92994 0.90716 0.91340 0.88030 0.88278 0.81087 0.89387 0.88511 0.89956 0.91123 0.89426 0.90598 0.89989 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.51 9.01 59.85 0.54 5.04 16 2 N -0.60 -16.46 2.93 -181.12 -0.53 -16.99 16 3 C -0.25 -7.22 9.67 -15.06 -0.15 -7.37 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 -0.06 5.13 -17.43 -0.09 -0.15 16 6 N -0.91 -27.97 10.58 55.49 0.59 -27.38 16 7 Si 0.90 22.67 29.57 -169.99 -5.03 17.64 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.16 3.50 5.71 -4.04 -0.02 3.47 16 12 C -0.15 -3.12 5.86 -26.73 -0.16 -3.28 16 13 C 0.12 1.98 5.41 -4.04 -0.02 1.96 16 14 N -0.62 -9.38 2.87 -181.57 -0.52 -9.90 16 15 C 0.08 0.84 10.24 59.84 0.61 1.45 16 16 C 0.51 8.63 7.67 -10.98 -0.08 8.54 16 17 O -0.52 -11.09 15.14 5.56 0.08 -11.01 16 18 C -0.05 -0.66 4.82 -29.04 -0.14 -0.80 16 19 C 0.02 0.30 5.87 -82.72 -0.49 -0.19 16 20 C -0.05 -0.62 11.53 -16.76 -0.19 -0.81 16 21 N -0.46 -4.94 3.13 -113.73 -0.36 -5.29 16 22 C 0.21 2.78 7.65 -155.24 -1.19 1.59 16 23 N -0.45 -7.81 10.62 -6.88 -0.07 -7.88 16 24 C -0.03 -0.33 6.33 -27.51 -0.17 -0.51 16 25 C -0.13 -0.78 5.97 -26.41 -0.16 -0.94 16 26 C -0.13 -0.66 5.94 -26.46 -0.16 -0.81 16 27 C 0.10 0.64 6.98 -3.90 -0.03 0.62 16 28 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 29 H 0.04 1.24 7.19 -51.92 -0.37 0.87 16 30 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 37 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 38 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 40 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 41 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 42 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.51 15.07 6.14 6.14 Total: -1.00 -39.33 407.51 -10.56 -49.89 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -8.97 Total: -3.03 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.89 Total: 7.82 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.89 Total: -67.45 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.33 -10.56 -49.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273515508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.344 kcal (2) G-P(sol) polarization free energy of solvation -39.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds