Wall clock time and date at job start Tue Mar 31 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00552 * 2 1 4 4 H 1.07997 * 120.00603 * 211.47349 * 3 2 1 5 5 C 1.38816 * 119.99689 * 31.46818 * 3 2 1 6 6 N 1.31617 * 119.99888 * 6.74358 * 5 3 2 7 7 Si 1.86794 * 120.00193 * 186.73674 * 5 3 2 8 8 H 1.48502 * 109.47033 * 90.00308 * 7 5 3 9 9 H 1.48501 * 109.47472 * 210.00127 * 7 5 3 10 10 H 1.48502 * 109.47230 * 330.00596 * 7 5 3 11 11 C 1.46504 * 120.00188 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47415 * 89.99796 * 11 2 1 13 13 C 1.52997 * 109.47349 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.47007 * 179.97438 * 13 12 11 15 15 C 1.46493 * 120.00049 * 269.99617 * 14 13 12 16 16 C 1.34783 * 119.99852 * 89.99993 * 14 13 12 17 17 O 1.21565 * 120.00014 * 3.28064 * 16 14 13 18 18 C 1.47709 * 119.99696 * 183.27545 * 16 14 13 19 19 C 1.41500 * 126.51240 * 173.73222 * 18 16 14 20 20 C 1.35364 * 105.50055 * 180.02562 * 19 18 16 21 21 N 1.35034 * 107.22907 * 0.02562 * 20 19 18 22 22 C 1.46503 * 124.88286 * 179.97438 * 21 20 19 23 23 C 1.54268 * 110.03342 * 32.88233 * 22 21 20 24 24 C 1.54971 * 104.15601 * 217.13608 * 23 22 21 25 25 C 1.54887 * 102.77885 * 37.88446 * 24 23 22 26 26 C 1.53872 * 110.03376 * 275.65788 * 22 21 20 27 27 N 1.28469 * 110.22972 * 359.97438 * 21 20 19 28 28 H 1.09005 * 109.47218 * 265.28144 * 1 2 3 29 29 H 1.09004 * 109.47087 * 25.27588 * 1 2 3 30 30 H 1.08998 * 109.47501 * 145.27537 * 1 2 3 31 31 H 0.97000 * 120.00435 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46674 * 329.99845 * 11 2 1 33 33 H 1.08992 * 109.47272 * 210.00124 * 11 2 1 34 34 H 1.08998 * 109.47411 * 60.00123 * 12 11 2 35 35 H 1.09005 * 109.46929 * 300.00503 * 12 11 2 36 36 H 1.09000 * 109.47328 * 60.00222 * 13 12 11 37 37 H 1.09000 * 109.46622 * 299.99834 * 13 12 11 38 38 H 1.09002 * 109.47399 * 264.00973 * 15 14 13 39 39 H 1.08996 * 109.47504 * 24.01185 * 15 14 13 40 40 H 1.08998 * 109.47141 * 144.00927 * 15 14 13 41 41 H 1.07995 * 127.25364 * 0.04053 * 19 18 16 42 42 H 1.08008 * 126.38788 * 179.97438 * 20 19 18 43 43 H 1.09001 * 110.01372 * 154.27056 * 22 21 20 44 44 H 1.08993 * 110.48493 * 335.77611 * 23 22 21 45 45 H 1.08995 * 110.48673 * 98.42639 * 23 22 21 46 46 H 1.09005 * 110.71643 * 279.56871 * 24 23 22 47 47 H 1.08997 * 110.76652 * 156.22417 * 24 23 22 48 48 H 1.08995 * 110.48752 * 203.40722 * 25 24 23 49 49 H 1.09000 * 110.59762 * 80.81594 * 25 24 23 50 50 H 1.08996 * 110.03544 * 238.57287 * 26 22 21 51 51 H 1.08997 * 110.02903 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1106 1.2547 -0.4883 5 6 1.6088 2.2996 0.6276 6 7 0.5046 2.1851 1.3347 7 14 2.4481 3.9609 0.4687 8 1 1.9101 4.6759 -0.7164 9 1 2.1906 4.7645 1.6907 10 1 3.9108 3.7629 0.3055 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2170 -3.0351 -1.4438 14 7 3.4606 -3.4577 -2.8252 15 6 2.4835 -4.3030 -3.5157 16 6 4.5837 -3.0689 -3.4608 17 8 5.4225 -2.4176 -2.8691 18 6 4.7955 -3.4343 -4.8762 19 6 5.8540 -2.9997 -5.7086 20 6 5.6346 -3.5862 -6.9087 21 7 4.5102 -4.3250 -6.7933 22 6 3.9186 -5.1242 -7.8692 23 6 5.0282 -5.6833 -8.7836 24 6 4.4165 -5.6168 -10.2059 25 6 3.6208 -4.2883 -10.1748 26 6 3.0238 -4.2379 -8.7533 27 7 4.0339 -4.2262 -5.6042 28 1 -0.3634 -0.0845 1.0242 29 1 -0.3633 0.9293 -0.4388 30 1 -0.3634 -0.8446 -0.5854 31 1 0.1268 2.9633 1.7736 32 1 1.6084 -2.0286 0.5130 33 1 3.1498 -1.1386 0.5133 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 2.6275 -3.7948 -0.9304 37 1 4.1694 -2.9053 -0.9298 38 1 2.7846 -5.3474 -3.4343 39 1 1.5023 -4.1712 -3.0596 40 1 2.4364 -4.0194 -4.5671 41 1 6.6661 -2.3394 -5.4425 42 1 6.2446 -3.4819 -7.7939 43 1 3.3343 -5.9423 -7.4481 44 1 5.9214 -5.0616 -8.7233 45 1 5.2605 -6.7138 -8.5152 46 1 3.7504 -6.4621 -10.3791 47 1 5.2004 -5.5800 -10.9623 48 1 2.8270 -4.3015 -10.9216 49 1 4.2847 -3.4397 -10.3400 50 1 2.0055 -4.6264 -8.7620 51 1 3.0301 -3.2132 -8.3821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273524446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:09 Heat of formation + Delta-G solvation = 70.574684 kcal Electronic energy + Delta-G solvation = -28779.381366 eV Core-core repulsion = 24909.539736 eV Total energy + Delta-G solvation = -3869.841629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.91752 -39.48381 -38.44594 -36.13143 -35.15379 -32.86865 -32.10305 -30.99391 -30.06672 -29.40206 -28.24423 -26.77158 -25.85053 -25.40408 -23.27865 -22.63380 -21.65191 -21.10081 -20.12619 -20.09981 -19.19082 -17.86446 -16.97328 -16.58414 -16.35586 -15.81413 -15.77046 -15.19030 -14.85070 -14.61148 -14.31761 -14.07117 -13.68623 -13.61925 -13.25376 -13.09431 -12.81707 -12.75741 -12.68258 -12.46693 -12.36128 -12.14787 -11.82121 -11.79105 -11.60145 -11.45543 -11.22670 -11.16516 -10.83055 -10.75506 -10.65741 -10.64086 -10.31896 -10.09157 -9.86387 -9.80599 -9.58662 -9.36676 -9.17595 -8.49361 -8.33237 -6.48644 -5.64258 -3.15624 1.53465 2.03876 2.16393 3.18724 3.45914 3.51424 3.53120 3.55104 3.69120 3.85850 4.19243 4.35549 4.50158 4.59885 4.62228 4.69762 4.72696 4.79153 4.93008 5.06720 5.16820 5.25851 5.33879 5.37485 5.43376 5.47968 5.49547 5.53803 5.55307 5.58202 5.64455 5.66452 5.69564 5.92895 5.94799 6.16234 6.21004 6.30439 6.36046 6.60776 6.62102 6.83721 6.89736 6.99628 7.17801 7.45957 7.53072 7.77286 7.78992 7.94131 8.37060 8.58699 9.37309 9.98428 10.52227 11.42338 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002166 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.675106 B =12926.829609 C =13169.981917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.601 5.601 3 C -0.253 4.253 4 H 0.064 0.936 5 C 0.004 3.996 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.117 3.883 14 N -0.602 5.602 15 C 0.078 3.922 16 C 0.597 3.403 17 O -0.530 6.530 18 C -0.009 4.009 19 C -0.178 4.178 20 C -0.020 4.020 21 N -0.281 5.281 22 C 0.144 3.856 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.137 4.137 27 N -0.259 5.259 28 H 0.018 0.982 29 H 0.049 0.951 30 H -0.008 1.008 31 H 0.252 0.748 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.161 0.839 42 H 0.178 0.822 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.083 0.917 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 -20.801 -25.111 33.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.082 0.918 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.006 4.006 14 N -0.334 5.334 15 C -0.065 4.065 16 C 0.383 3.617 17 O -0.404 6.404 18 C -0.169 4.169 19 C -0.206 4.206 20 C -0.162 4.162 21 N -0.069 5.069 22 C 0.043 3.957 23 C -0.175 4.175 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.176 4.176 27 N -0.095 5.095 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.010 0.990 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.886 -21.038 -24.690 32.967 hybrid contribution 0.915 1.424 -0.192 1.704 sum 6.801 -19.614 -24.881 32.404 Atomic orbital electron populations 1.20717 0.83179 0.96810 0.97405 1.43792 1.01561 1.00761 1.86263 1.19174 1.03367 0.87545 1.28172 0.91800 1.25232 0.98012 0.99087 0.97084 1.70022 1.21589 1.28796 1.34910 0.86266 0.79390 0.84064 0.76935 1.21523 1.21694 1.20291 1.20645 0.96140 0.88394 0.92114 1.22590 0.99226 0.95362 1.01953 1.21635 1.01475 0.97004 0.80458 1.47761 1.20320 1.50538 1.14778 1.22047 0.91657 0.93767 0.99067 1.16991 0.81767 0.79396 0.83584 1.90807 1.43909 1.39579 1.66121 1.22028 0.96746 1.02360 0.95743 1.21779 1.01602 1.05168 0.92026 1.22672 0.93012 0.99636 1.00914 1.45857 1.18437 1.34136 1.08422 1.22317 0.95407 0.93140 0.84869 1.22854 0.97671 1.02294 0.94642 1.22498 0.99730 0.98049 0.95696 1.22385 0.99894 0.97909 0.96099 1.22606 0.99344 1.00713 0.94893 1.73706 1.23448 1.20061 0.92238 0.96333 0.93239 0.98987 0.93814 0.94831 0.93326 0.91853 0.92961 0.90827 0.89837 0.93062 0.91406 0.89096 0.82102 0.80513 0.87089 0.89819 0.89983 0.90710 0.90530 0.90781 0.91107 0.89849 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 9.00 59.84 0.54 4.79 16 2 N -0.60 -16.21 2.90 -181.12 -0.52 -16.74 16 3 C -0.25 -7.42 9.57 -15.06 -0.14 -7.57 16 4 H 0.06 1.88 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.12 5.15 -17.43 -0.09 0.03 16 6 N -0.91 -27.72 10.98 55.49 0.61 -27.11 16 7 Si 0.90 23.00 29.56 -169.99 -5.02 17.98 16 8 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.16 3.43 5.69 -4.04 -0.02 3.41 16 12 C -0.15 -2.93 5.86 -26.73 -0.16 -3.09 16 13 C 0.12 1.89 5.40 -4.04 -0.02 1.87 16 14 N -0.60 -9.38 2.87 -182.75 -0.53 -9.90 16 15 C 0.08 0.95 9.62 59.84 0.58 1.53 16 16 C 0.60 10.33 7.68 -12.39 -0.10 10.23 16 17 O -0.53 -10.92 16.49 5.31 0.09 -10.83 16 18 C -0.01 -0.13 6.82 -82.77 -0.56 -0.70 16 19 C -0.18 -2.19 10.81 -39.36 -0.43 -2.62 16 20 C -0.02 -0.18 10.38 -17.17 -0.18 -0.36 16 21 N -0.28 -2.62 3.13 -53.74 -0.17 -2.79 16 22 C 0.14 0.84 3.87 -66.81 -0.26 0.58 16 23 C -0.14 -0.52 6.37 -25.03 -0.16 -0.68 16 24 C -0.12 -0.33 6.91 -24.70 -0.17 -0.50 16 25 C -0.13 -0.46 6.83 -25.07 -0.17 -0.63 16 26 C -0.14 -0.72 6.60 -25.61 -0.17 -0.89 16 27 N -0.26 -3.17 8.50 33.42 0.28 -2.89 16 28 H 0.02 0.51 7.75 -51.93 -0.40 0.10 16 29 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 30 H -0.01 -0.19 8.11 -51.93 -0.42 -0.61 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 37 H 0.08 1.45 7.38 -51.93 -0.38 1.07 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 40 H 0.09 1.13 5.37 -51.93 -0.28 0.85 16 41 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.18 0.96 6.84 -52.48 -0.36 0.60 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.31 5.86 -51.93 -0.30 0.01 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 LS Contribution 406.48 15.07 6.13 6.13 Total: -1.00 -35.76 406.48 -9.45 -45.21 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -8.80 Total: -4.48 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.51 Total: 5.42 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.32 Total: -59.42 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.76 -9.45 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273524446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.781 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds