Wall clock time and date at job start Tue Mar 31 2020 18:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00552 * 2 1 4 4 H 1.07997 * 120.00603 * 211.47349 * 3 2 1 5 5 C 1.38816 * 119.99689 * 31.46818 * 3 2 1 6 6 N 1.31617 * 119.99888 * 6.74358 * 5 3 2 7 7 Si 1.86794 * 120.00193 * 186.73674 * 5 3 2 8 8 H 1.48502 * 109.47033 * 90.00308 * 7 5 3 9 9 H 1.48501 * 109.47472 * 210.00127 * 7 5 3 10 10 H 1.48502 * 109.47230 * 330.00596 * 7 5 3 11 11 C 1.46504 * 120.00188 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47415 * 89.99796 * 11 2 1 13 13 C 1.52997 * 109.47349 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.47007 * 179.97438 * 13 12 11 15 15 C 1.46493 * 120.00049 * 269.99617 * 14 13 12 16 16 C 1.34783 * 119.99852 * 89.99993 * 14 13 12 17 17 O 1.21565 * 120.00014 * 3.28064 * 16 14 13 18 18 C 1.47709 * 119.99696 * 183.27545 * 16 14 13 19 19 C 1.41500 * 126.51240 * 173.73222 * 18 16 14 20 20 C 1.35364 * 105.50055 * 180.02562 * 19 18 16 21 21 N 1.35034 * 107.22907 * 0.02562 * 20 19 18 22 22 C 1.46503 * 124.88286 * 179.97438 * 21 20 19 23 23 C 1.54268 * 110.03342 * 32.88233 * 22 21 20 24 24 C 1.54971 * 104.15601 * 217.13608 * 23 22 21 25 25 C 1.54887 * 102.77885 * 37.88446 * 24 23 22 26 26 C 1.53872 * 110.03376 * 275.65788 * 22 21 20 27 27 N 1.28469 * 110.22972 * 359.97438 * 21 20 19 28 28 H 1.09005 * 109.47218 * 265.28144 * 1 2 3 29 29 H 1.09004 * 109.47087 * 25.27588 * 1 2 3 30 30 H 1.08998 * 109.47501 * 145.27537 * 1 2 3 31 31 H 0.97000 * 120.00435 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46674 * 329.99845 * 11 2 1 33 33 H 1.08992 * 109.47272 * 210.00124 * 11 2 1 34 34 H 1.08998 * 109.47411 * 60.00123 * 12 11 2 35 35 H 1.09005 * 109.46929 * 300.00503 * 12 11 2 36 36 H 1.09000 * 109.47328 * 60.00222 * 13 12 11 37 37 H 1.09000 * 109.46622 * 299.99834 * 13 12 11 38 38 H 1.09002 * 109.47399 * 264.00973 * 15 14 13 39 39 H 1.08996 * 109.47504 * 24.01185 * 15 14 13 40 40 H 1.08998 * 109.47141 * 144.00927 * 15 14 13 41 41 H 1.07995 * 127.25364 * 0.04053 * 19 18 16 42 42 H 1.08008 * 126.38788 * 179.97438 * 20 19 18 43 43 H 1.09001 * 110.01372 * 154.27056 * 22 21 20 44 44 H 1.08993 * 110.48493 * 335.77611 * 23 22 21 45 45 H 1.08995 * 110.48673 * 98.42639 * 23 22 21 46 46 H 1.09005 * 110.71643 * 279.56871 * 24 23 22 47 47 H 1.08997 * 110.76652 * 156.22417 * 24 23 22 48 48 H 1.08995 * 110.48752 * 203.40722 * 25 24 23 49 49 H 1.09000 * 110.59762 * 80.81594 * 25 24 23 50 50 H 1.08996 * 110.03544 * 238.57287 * 26 22 21 51 51 H 1.08997 * 110.02903 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1106 1.2547 -0.4883 5 6 1.6088 2.2996 0.6276 6 7 0.5046 2.1851 1.3347 7 14 2.4481 3.9609 0.4687 8 1 1.9101 4.6759 -0.7164 9 1 2.1906 4.7645 1.6907 10 1 3.9108 3.7629 0.3055 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2170 -3.0351 -1.4438 14 7 3.4606 -3.4577 -2.8252 15 6 2.4835 -4.3030 -3.5157 16 6 4.5837 -3.0689 -3.4608 17 8 5.4225 -2.4176 -2.8691 18 6 4.7955 -3.4343 -4.8762 19 6 5.8540 -2.9997 -5.7086 20 6 5.6346 -3.5862 -6.9087 21 7 4.5102 -4.3250 -6.7933 22 6 3.9186 -5.1242 -7.8692 23 6 5.0282 -5.6833 -8.7836 24 6 4.4165 -5.6168 -10.2059 25 6 3.6208 -4.2883 -10.1748 26 6 3.0238 -4.2379 -8.7533 27 7 4.0339 -4.2262 -5.6042 28 1 -0.3634 -0.0845 1.0242 29 1 -0.3633 0.9293 -0.4388 30 1 -0.3634 -0.8446 -0.5854 31 1 0.1268 2.9633 1.7736 32 1 1.6084 -2.0286 0.5130 33 1 3.1498 -1.1386 0.5133 34 1 3.0415 -0.9500 -1.9568 35 1 1.5000 -1.8399 -1.9571 36 1 2.6275 -3.7948 -0.9304 37 1 4.1694 -2.9053 -0.9298 38 1 2.7846 -5.3474 -3.4343 39 1 1.5023 -4.1712 -3.0596 40 1 2.4364 -4.0194 -4.5671 41 1 6.6661 -2.3394 -5.4425 42 1 6.2446 -3.4819 -7.7939 43 1 3.3343 -5.9423 -7.4481 44 1 5.9214 -5.0616 -8.7233 45 1 5.2605 -6.7138 -8.5152 46 1 3.7504 -6.4621 -10.3791 47 1 5.2004 -5.5800 -10.9623 48 1 2.8270 -4.3015 -10.9216 49 1 4.2847 -3.4397 -10.3400 50 1 2.0055 -4.6264 -8.7620 51 1 3.0301 -3.2132 -8.3821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273524446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:08 Heat of formation + Delta-G solvation = 49.614856 kcal Electronic energy + Delta-G solvation = -28780.290252 eV Core-core repulsion = 24909.539736 eV Total energy + Delta-G solvation = -3870.750516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.76335 -40.72087 -38.91515 -37.91634 -36.73413 -34.23643 -33.37026 -32.21306 -31.55118 -29.74270 -28.96462 -28.06604 -27.84275 -26.92534 -24.68602 -23.40055 -22.97419 -21.95572 -21.47583 -20.73638 -20.30910 -18.75425 -18.57912 -17.90337 -17.34731 -17.07044 -16.69412 -16.57029 -15.90371 -15.81877 -15.58858 -15.39491 -14.84738 -14.66401 -14.57012 -14.36208 -14.30540 -14.01178 -13.80844 -13.43843 -13.31732 -13.08899 -12.98663 -12.78949 -12.63623 -12.56302 -12.51501 -12.28196 -12.17257 -12.12199 -12.03333 -11.91014 -11.83304 -11.61028 -11.48714 -11.41124 -11.18809 -10.65240 -10.22265 -10.09164 -9.67410 -8.65219 -7.88260 -5.43231 0.50926 1.15698 1.42223 1.43141 1.44859 1.53604 2.02712 2.33869 2.47986 3.17956 3.26371 3.49555 3.51969 3.70372 3.81153 3.87903 3.96545 4.12473 4.30305 4.31476 4.38252 4.39551 4.43482 4.47873 4.52919 4.60492 4.64804 4.70931 4.73046 4.76108 4.77582 4.85865 4.88563 4.92059 4.97519 5.01281 5.10017 5.20614 5.22421 5.24099 5.25492 5.34452 5.42067 5.48676 5.59122 5.61452 5.64252 5.91362 6.31753 6.36642 6.84760 7.12735 7.15108 7.85026 8.31547 9.15883 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002166 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.675106 B =12926.829609 C =13169.981917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.621 5.621 3 C -0.267 4.267 4 H 0.053 0.947 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.286 1.286 10 H -0.274 1.274 11 C 0.154 3.846 12 C -0.128 4.128 13 C 0.124 3.876 14 N -0.602 5.602 15 C 0.079 3.921 16 C 0.587 3.413 17 O -0.579 6.579 18 C -0.044 4.044 19 C -0.205 4.205 20 C 0.003 3.997 21 N -0.270 5.270 22 C 0.134 3.866 23 C -0.132 4.132 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.135 4.135 27 N -0.259 5.259 28 H 0.000 1.000 29 H 0.021 0.979 30 H 0.028 0.972 31 H 0.251 0.749 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.218 0.782 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -22.776 -27.641 36.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.345 5.345 3 C -0.398 4.398 4 H 0.071 0.929 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.212 1.212 10 H -0.199 1.199 11 C 0.027 3.973 12 C -0.170 4.170 13 C 0.001 3.999 14 N -0.333 5.333 15 C -0.063 4.063 16 C 0.375 3.625 17 O -0.457 6.457 18 C -0.201 4.201 19 C -0.233 4.233 20 C -0.140 4.140 21 N -0.058 5.058 22 C 0.035 3.965 23 C -0.170 4.170 24 C -0.152 4.152 25 C -0.161 4.161 26 C -0.173 4.173 27 N -0.097 5.097 28 H 0.018 0.982 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.174 0.826 42 H 0.235 0.765 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.833 -23.068 -27.246 36.173 hybrid contribution 0.885 1.934 0.476 2.180 sum 6.718 -21.133 -26.770 34.762 Atomic orbital electron populations 1.20510 0.82855 0.96836 0.96610 1.44066 1.02121 1.01675 1.86600 1.19343 1.03244 0.89106 1.28104 0.92894 1.25975 0.98777 1.02480 0.97017 1.70161 1.22658 1.29589 1.35623 0.85264 0.78460 0.79729 0.76978 1.20938 1.21218 1.19855 1.20783 0.95498 0.87249 0.93765 1.22276 0.99157 0.96003 0.99521 1.21490 1.00729 0.96224 0.81417 1.47863 1.20499 1.50375 1.14557 1.22203 0.91424 0.93950 0.98757 1.17487 0.81587 0.78679 0.84724 1.90760 1.45599 1.41883 1.67489 1.21766 0.98671 1.04728 0.94965 1.21944 1.01682 1.06453 0.93268 1.23141 0.92494 0.97497 1.00880 1.46296 1.18094 1.33329 1.08105 1.22743 0.96522 0.93005 0.84230 1.22888 0.96939 1.02634 0.94588 1.22486 0.99953 0.97628 0.95158 1.22386 1.00174 0.98548 0.94951 1.22589 0.99846 0.99143 0.95762 1.73622 1.23212 1.19602 0.93220 0.98175 0.95978 0.95339 0.93969 0.92117 0.94572 0.95845 0.92371 0.87171 0.91440 0.91379 0.89893 0.89293 0.82568 0.76528 0.86480 0.89430 0.89165 0.89904 0.89397 0.90101 0.91221 0.89180 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 9.00 127.77 1.15 10.36 16 2 N -0.62 -33.88 2.90 -726.94 -2.11 -35.98 16 3 C -0.27 -16.07 9.57 84.03 0.80 -15.26 16 4 H 0.05 3.23 7.84 -2.91 -0.02 3.21 16 5 C -0.05 -2.80 5.15 84.86 0.44 -2.36 16 6 N -0.93 -57.85 10.98 21.65 0.24 -57.61 16 7 Si 0.97 48.03 29.56 68.60 2.03 50.06 16 8 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 11 C 0.15 6.80 5.69 86.38 0.49 7.29 16 12 C -0.13 -5.04 5.86 30.59 0.18 -4.86 16 13 C 0.12 3.98 5.40 86.38 0.47 4.44 16 14 N -0.60 -18.67 2.87 -850.37 -2.44 -21.11 16 15 C 0.08 1.80 9.62 127.77 1.23 3.03 16 16 C 0.59 21.09 7.68 86.75 0.67 21.76 16 17 O -0.58 -25.36 16.49 -3.92 -0.06 -25.43 16 18 C -0.04 -1.29 6.82 42.46 0.29 -1.00 16 19 C -0.21 -5.12 10.81 22.41 0.24 -4.87 16 20 C 0.00 0.05 10.38 83.54 0.87 0.91 16 21 N -0.27 -4.58 3.13 -323.93 -1.02 -5.60 16 22 C 0.13 1.25 3.87 45.71 0.18 1.42 16 23 C -0.13 -0.56 6.37 31.70 0.20 -0.36 16 24 C -0.11 -0.23 6.91 31.91 0.22 -0.01 16 25 C -0.12 -0.56 6.83 31.67 0.22 -0.35 16 26 C -0.13 -1.15 6.60 31.32 0.21 -0.95 16 27 N -0.26 -6.14 8.50 -48.18 -0.41 -6.55 16 28 H 0.00 0.00 7.75 -2.38 -0.02 -0.02 16 29 H 0.02 1.23 7.11 -2.38 -0.02 1.21 16 30 H 0.03 1.25 8.11 -2.39 -0.02 1.23 16 31 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 32 H 0.06 2.36 8.07 -2.38 -0.02 2.34 16 33 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 36 H 0.11 2.74 8.07 -2.39 -0.02 2.72 16 37 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.64 8.03 -2.39 -0.02 1.62 16 40 H 0.09 2.11 5.37 -2.39 -0.01 2.10 16 41 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.22 1.62 6.84 -2.91 -0.02 1.60 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 0.33 5.86 -2.39 -0.01 0.32 16 45 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.08 0.07 8.14 -2.38 -0.02 0.06 16 47 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.05 0.74 7.92 -2.39 -0.02 0.72 16 Total: -1.00 -80.55 406.48 4.97 -75.59 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.89 Total: 7.45 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.84 Total: 19.18 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.74 Total: -126.85 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.43 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -80.55 4.97 -75.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273524446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.201 kcal (2) G-P(sol) polarization free energy of solvation -80.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds