Wall clock time and date at job start Tue Mar 31 2020 18:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 H 1.08998 * 109.46603 * 304.99414 * 3 2 1 5 5 C 1.52998 * 109.47024 * 64.99703 * 3 2 1 6 6 C 1.52995 * 109.46831 * 185.00007 * 3 2 1 7 7 N 1.46902 * 109.47745 * 62.58709 * 6 3 2 8 8 C 1.46818 * 110.99401 * 50.40620 * 7 6 3 9 9 C 1.54008 * 108.44523 * 183.40911 * 8 7 6 10 10 H 1.08994 * 112.34340 * 169.53095 * 9 8 7 11 11 C 1.54717 * 108.46190 * 44.09069 * 9 8 7 12 12 C 1.53979 * 106.10919 * 274.71724 * 11 9 8 13 13 C 1.54717 * 106.10794 * 359.97438 * 12 11 9 14 14 H 1.08996 * 112.85186 * 210.42806 * 13 12 11 15 15 C 1.46815 * 111.00279 * 176.08955 * 7 6 3 16 16 C 1.55301 * 104.15281 * 333.22450 * 13 12 11 17 17 H 1.09000 * 111.09346 * 160.62377 * 16 13 12 18 18 C 1.50700 * 111.09364 * 284.71183 * 16 13 12 19 19 O 1.21281 * 120.00014 * 0.02562 * 18 16 13 20 20 N 1.34772 * 119.99808 * 180.02562 * 18 16 13 21 21 C 1.47072 * 136.05974 * 359.62899 * 20 18 16 22 22 C 1.53752 * 87.89062 * 152.96576 * 21 20 18 23 23 C 1.50700 * 114.27081 * 139.79114 * 22 21 20 24 24 H 1.07991 * 120.00010 * 266.47861 * 23 22 21 25 25 C 1.37881 * 119.99399 * 86.47194 * 23 22 21 26 26 N 1.31515 * 120.00425 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99525 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47061 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46872 * 120.00256 * 27 25 23 30 30 H 1.48498 * 109.47070 * 240.00367 * 27 25 23 31 31 C 1.47070 * 136.05931 * 180.02562 * 20 18 16 32 32 H 1.09003 * 109.47054 * 300.00826 * 1 2 3 33 33 H 1.09010 * 109.46709 * 60.00144 * 1 2 3 34 34 H 1.08992 * 109.47700 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47054 * 239.99173 * 2 1 3 36 36 H 1.09001 * 109.46573 * 119.99973 * 2 1 3 37 37 H 1.09003 * 109.46714 * 184.46728 * 5 3 2 38 38 H 1.08994 * 109.47208 * 304.46887 * 5 3 2 39 39 H 1.08993 * 109.47064 * 64.47410 * 5 3 2 40 40 H 1.09002 * 109.46936 * 182.58998 * 6 3 2 41 41 H 1.09006 * 109.47461 * 302.58316 * 6 3 2 42 42 H 1.08998 * 109.53931 * 302.08662 * 8 7 6 43 43 H 1.08992 * 109.54438 * 62.34703 * 8 7 6 44 44 H 1.08993 * 110.12475 * 155.54866 * 11 9 8 45 45 H 1.09004 * 110.17665 * 33.90031 * 11 9 8 46 46 H 1.09002 * 110.12051 * 240.83952 * 12 11 9 47 47 H 1.08992 * 110.12773 * 119.15522 * 12 11 9 48 48 H 1.09001 * 109.54136 * 297.65892 * 15 7 6 49 49 H 1.09002 * 109.54053 * 57.82569 * 15 7 6 50 50 H 1.09000 * 113.46634 * 267.69655 * 21 20 18 51 51 H 1.08998 * 113.46512 * 38.13364 * 21 20 18 52 52 H 1.09002 * 114.39217 * 272.68037 * 22 21 20 53 53 H 0.97005 * 119.99848 * 180.02562 * 26 25 23 54 54 H 1.09005 * 113.46519 * 321.86101 * 31 20 18 55 55 H 1.08992 * 113.47245 * 92.23812 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 7 3.9512 0.8431 -1.4093 8 6 3.2085 1.4518 -2.5199 9 6 3.5934 0.7229 -3.8209 10 1 2.9489 0.9976 -4.6559 11 6 3.6034 -0.7994 -3.5450 12 6 4.9975 -1.1213 -2.9759 13 6 5.7649 0.2215 -2.9349 14 1 6.8398 0.0989 -3.0681 15 6 5.4045 0.9114 -1.6061 16 6 5.1094 1.0680 -4.0599 17 1 5.3130 2.1298 -3.9211 18 6 5.5618 0.6048 -5.4207 19 8 6.3403 -0.3201 -5.5187 20 7 5.1013 1.2182 -6.5288 21 6 4.1793 2.3264 -6.8202 22 6 4.9639 2.5621 -8.1212 23 6 4.1026 2.8935 -9.3126 24 1 3.7745 2.1079 -9.9770 25 6 3.7336 4.1999 -9.5542 26 7 4.1335 5.1566 -8.7454 27 14 2.6653 4.6107 -11.0306 28 1 2.3524 3.3656 -11.7769 29 1 1.4026 5.2406 -10.5680 30 1 3.3914 5.5523 -11.9202 31 6 5.2941 1.0696 -7.9793 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 -0.3634 -1.0275 -0.0005 35 1 1.8934 -0.5140 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.9289 3.1757 1.2744 38 1 0.5552 2.0553 1.4354 39 1 2.1335 1.6360 2.1434 40 1 3.9321 2.4694 -0.0795 41 1 3.9975 0.8662 0.6910 42 1 2.1383 1.3314 -2.3521 43 1 3.4519 2.5123 -2.5834 44 1 3.4404 -1.3495 -4.4717 45 1 2.8331 -1.0547 -2.8173 46 1 5.5136 -1.8283 -3.6254 47 1 4.9064 -1.5323 -1.9705 48 1 5.7191 1.9545 -1.6399 49 1 5.9081 0.4052 -0.7826 50 1 3.1514 2.0038 -6.9856 51 1 4.2539 3.1509 -6.1111 52 1 5.8245 3.2225 -8.0146 53 1 3.8735 6.0756 -8.9152 54 1 6.3188 0.8232 -8.2579 55 1 4.5606 0.4151 -8.4499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278133681.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:13 Heat of formation + Delta-G solvation = -24.717338 kcal Electronic energy + Delta-G solvation = -30815.571857 eV Core-core repulsion = 27045.138399 eV Total energy + Delta-G solvation = -3770.433458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.04436 -40.55439 -38.79002 -37.69147 -34.73491 -34.64390 -32.29495 -31.40534 -30.81378 -29.80781 -27.80848 -26.80452 -26.59424 -25.56335 -24.78192 -23.45150 -22.16652 -21.15147 -20.44688 -20.06507 -19.56294 -18.68957 -17.96773 -17.46192 -16.85492 -16.45045 -16.28399 -16.02755 -15.89992 -15.50582 -15.32953 -14.83169 -14.54868 -14.46690 -14.35228 -14.04042 -13.93550 -13.58369 -13.46959 -13.26987 -13.16655 -13.14546 -12.82745 -12.78107 -12.74246 -12.58888 -12.39322 -12.19201 -12.16547 -12.02029 -11.89349 -11.72997 -11.51647 -11.36148 -11.32970 -11.22953 -11.16260 -11.05953 -11.00210 -10.61685 -10.42985 -9.53722 -9.14929 -8.17253 -6.28280 1.45507 1.49158 1.59643 1.65511 2.04521 2.46036 2.92816 3.12988 3.43133 3.47652 3.56391 3.88428 3.93292 4.04713 4.15805 4.22237 4.25029 4.28150 4.33155 4.39655 4.46250 4.52164 4.57695 4.60504 4.62001 4.64768 4.69659 4.73258 4.75747 4.80909 4.82456 4.87712 4.88389 4.89646 4.92275 4.96270 4.98766 5.06934 5.12650 5.17372 5.19921 5.23269 5.24579 5.32275 5.35009 5.41575 5.55617 5.58630 5.59789 5.72105 5.80641 6.18746 6.22653 6.22839 6.80417 6.94977 7.22411 7.41967 8.92873 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.003008 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.174652 B = 9306.552684 C =10506.729417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.092 4.092 4 H 0.066 0.934 5 C -0.145 4.145 6 C 0.064 3.936 7 N -0.532 5.532 8 C 0.067 3.933 9 C -0.075 4.075 10 H 0.081 0.919 11 C -0.094 4.094 12 C -0.090 4.090 13 C -0.070 4.070 14 H 0.080 0.920 15 C 0.071 3.929 16 C -0.108 4.108 17 H 0.092 0.908 18 C 0.539 3.461 19 O -0.591 6.591 20 N -0.645 5.645 21 C 0.120 3.880 22 C 0.024 3.976 23 C -0.527 4.527 24 H 0.066 0.934 25 C 0.022 3.978 26 N -0.918 5.918 27 Si 0.958 3.042 28 H -0.264 1.264 29 H -0.279 1.279 30 H -0.284 1.284 31 C 0.104 3.896 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.084 0.916 48 H 0.031 0.969 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.037 0.963 53 H 0.264 0.736 54 H 0.052 0.948 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -6.938 20.763 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.111 4.111 4 H 0.084 0.916 5 C -0.203 4.203 6 C -0.063 4.063 7 N -0.256 5.256 8 C -0.061 4.061 9 C -0.095 4.095 10 H 0.099 0.901 11 C -0.131 4.131 12 C -0.128 4.128 13 C -0.089 4.089 14 H 0.098 0.902 15 C -0.057 4.057 16 C -0.129 4.129 17 H 0.110 0.890 18 C 0.331 3.669 19 O -0.473 6.473 20 N -0.378 5.378 21 C -0.003 4.003 22 C 0.004 3.996 23 C -0.565 4.565 24 H 0.084 0.916 25 C -0.178 4.178 26 N -0.556 5.556 27 Si 0.784 3.216 28 H -0.189 1.189 29 H -0.204 1.204 30 H -0.210 1.210 31 C -0.019 4.019 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.106 0.894 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.049 0.951 49 H 0.113 0.887 50 H 0.098 0.902 51 H 0.074 0.926 52 H 0.055 0.945 53 H 0.073 0.927 54 H 0.071 0.929 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.716 -7.823 20.972 23.102 hybrid contribution 0.091 1.450 -1.249 1.916 sum -5.625 -6.373 19.723 21.477 Atomic orbital electron populations 1.21847 0.96181 1.01483 1.01635 1.21444 0.95154 0.95675 1.02343 1.21265 0.94064 0.97154 0.98610 0.91615 1.21826 1.01851 0.99966 0.96643 1.22181 0.95979 0.97107 0.91079 1.61641 1.05064 1.56883 1.02034 1.22294 0.99555 0.94908 0.89309 1.22777 0.92118 0.96926 0.97644 0.90089 1.21967 0.98391 0.93354 0.99430 1.21922 0.94399 0.95559 1.00903 1.22263 0.99007 0.95216 0.92415 0.90182 1.22226 0.88317 0.98405 0.96780 1.22968 0.98872 1.00620 0.90423 0.88995 1.20629 0.79967 0.80729 0.85604 1.90586 1.38097 1.31023 1.87602 1.50031 1.45861 1.35738 1.06156 1.23301 0.93911 0.85817 0.97266 1.20264 0.95456 0.90310 0.93539 1.21227 1.31477 0.93372 1.10398 0.91632 1.25752 0.97011 0.96216 0.98855 1.70067 1.45935 1.00848 1.38782 0.85503 0.78445 0.78325 0.79372 1.18850 1.20437 1.20999 1.23197 1.00099 0.99644 0.78965 0.92254 0.93388 0.92902 0.91633 0.92158 0.93053 0.91840 0.92168 0.95337 0.89873 0.88762 0.95055 0.94803 0.89366 0.94576 0.89755 0.95108 0.88740 0.90210 0.92588 0.94511 0.92657 0.92944 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 71.98 0.70 -1.32 16 2 C -0.11 -1.51 5.18 30.59 0.16 -1.36 16 3 C -0.09 -1.27 1.89 -10.80 -0.02 -1.30 16 4 H 0.07 1.03 6.11 -2.39 -0.01 1.01 16 5 C -0.15 -1.69 9.05 71.98 0.65 -1.04 16 6 C 0.06 0.97 4.58 86.30 0.40 1.36 16 7 N -0.53 -9.79 2.83 -892.54 -2.52 -12.31 16 8 C 0.07 1.40 4.27 86.66 0.37 1.78 16 9 C -0.08 -1.97 3.74 -8.35 -0.03 -2.00 16 10 H 0.08 2.29 7.80 -2.39 -0.02 2.27 16 11 C -0.09 -2.38 5.66 31.51 0.18 -2.20 16 12 C -0.09 -2.33 5.39 31.51 0.17 -2.16 16 13 C -0.07 -1.84 3.23 -9.08 -0.03 -1.87 16 14 H 0.08 2.32 7.93 -2.39 -0.02 2.30 16 15 C 0.07 1.42 4.88 86.66 0.42 1.84 16 16 C -0.11 -3.29 2.53 -9.23 -0.02 -3.32 16 17 H 0.09 2.82 7.87 -2.39 -0.02 2.80 16 18 C 0.54 21.28 7.02 87.66 0.62 21.89 16 19 O -0.59 -26.63 16.04 -3.03 -0.05 -26.68 16 20 N -0.64 -26.57 3.69 -857.76 -3.16 -29.73 16 21 C 0.12 5.02 7.66 83.26 0.64 5.65 16 22 C 0.02 1.13 3.79 -11.11 -0.04 1.09 16 23 C -0.53 -26.79 8.83 25.60 0.23 -26.57 16 24 H 0.07 3.25 7.81 -2.92 -0.02 3.22 16 25 C 0.02 1.13 5.46 84.66 0.46 1.59 16 26 N -0.92 -50.11 13.26 21.45 0.28 -49.82 16 27 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 28 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 30 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 31 C 0.10 4.43 8.17 83.18 0.68 5.11 16 32 H 0.06 0.69 6.47 -2.39 -0.02 0.67 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.09 6.64 -2.39 -0.02 1.07 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.70 6.37 -2.39 -0.02 0.68 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.09 1.78 5.78 -2.39 -0.01 1.77 16 43 H 0.03 0.70 8.03 -2.39 -0.02 0.68 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.93 7.14 -2.39 -0.02 1.91 16 46 H 0.04 1.11 7.68 -2.39 -0.02 1.09 16 47 H 0.08 1.86 7.80 -2.39 -0.02 1.85 16 48 H 0.03 0.64 8.03 -2.39 -0.02 0.62 16 49 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.08 3.23 8.10 -2.39 -0.02 3.21 16 51 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 52 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 53 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 54 H 0.05 2.24 8.14 -2.38 -0.02 2.23 16 55 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 Total: -1.00 -58.68 411.31 2.93 -55.75 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.83 Total: 22.89 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.52 Total: -2.82 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -5.40 Total: -91.87 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -58.68 2.93 -55.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278133681.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.031 kcal (2) G-P(sol) polarization free energy of solvation -58.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds