Wall clock time and date at job start Tue Mar 31 2020 19:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47062 * 2 1 4 4 C 1.36914 * 119.99719 * 96.64455 * 3 2 1 5 5 H 1.08001 * 119.99568 * 165.18246 * 4 3 2 6 6 C 1.39014 * 120.00228 * 345.18183 * 4 3 2 7 7 N 1.31376 * 120.00034 * 341.18928 * 6 4 3 8 8 Si 1.86801 * 119.99739 * 161.18386 * 6 4 3 9 9 H 1.48497 * 109.47571 * 59.99978 * 8 6 4 10 10 H 1.48502 * 109.47336 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47259 * 299.99666 * 8 6 4 12 12 C 1.34771 * 119.99764 * 276.64664 * 3 2 1 13 13 O 1.21615 * 119.99944 * 186.37679 * 12 3 2 14 14 C 1.47583 * 120.00282 * 6.38573 * 12 3 2 15 15 N 1.31858 * 126.47083 * 4.58587 * 14 12 3 16 16 N 1.28467 * 110.11743 * 179.76483 * 15 14 12 17 17 H 0.97000 * 124.93056 * 180.23883 * 16 15 14 18 18 C 1.35608 * 110.14219 * 0.39310 * 16 15 14 19 19 C 1.35408 * 107.14812 * 359.61404 * 18 16 15 20 20 I 2.09505 * 127.23160 * 180.22386 * 19 18 16 21 21 H 1.09005 * 109.47063 * 59.99913 * 1 2 3 22 22 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46912 * 300.00015 * 1 2 3 24 24 H 1.08998 * 109.47612 * 240.00117 * 2 1 3 25 25 H 1.08999 * 109.47279 * 119.99435 * 2 1 3 26 26 H 0.97008 * 120.00031 * 180.02562 * 7 6 4 27 27 H 1.07998 * 126.42946 * 179.87882 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3759 1.9809 1.1778 5 1 2.9526 2.8940 1.1655 6 6 1.9965 1.4146 2.3893 7 7 1.0127 0.5448 2.4284 8 14 2.8859 1.8902 3.9617 9 1 2.7437 3.3509 4.1884 10 1 2.2961 1.1514 5.1069 11 1 4.3253 1.5459 3.8398 12 6 2.1156 2.0616 -1.1593 13 8 2.6282 3.1643 -1.1762 14 6 1.5997 1.4686 -2.4085 15 7 0.9488 0.3278 -2.5241 16 7 0.6422 0.1166 -3.7536 17 1 0.1582 -0.6580 -4.0802 18 6 1.0965 1.1320 -4.5292 19 6 1.7105 2.0171 -3.7088 20 53 2.6310 3.8196 -4.2501 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 0.7478 0.1498 3.2739 27 1 0.9853 1.2205 -5.5998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320316718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:27 Heat of formation + Delta-G solvation = 87.201791 kcal Electronic energy + Delta-G solvation = -15608.430602 eV Core-core repulsion = 12842.947935 eV Total energy + Delta-G solvation = -2765.482667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 334.987 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21012 -38.14622 -35.02681 -32.16761 -32.00545 -30.52937 -29.20122 -27.66281 -25.32481 -22.89205 -21.82400 -20.67567 -18.87109 -17.80911 -16.73344 -16.01425 -15.21512 -14.62041 -14.03367 -13.39314 -13.16748 -12.81861 -12.54285 -12.21385 -11.74762 -11.14125 -11.01605 -10.70394 -10.36022 -10.32500 -10.23213 -10.00579 -9.74505 -9.38033 -8.89215 -8.75122 -8.49558 -8.25984 -7.61912 -6.29209 -3.77013 1.67748 2.10859 2.40600 3.24241 3.26266 3.28952 3.33338 4.12989 4.41320 4.75325 5.09871 5.19666 5.26978 5.64617 5.90395 6.42171 6.61175 6.84423 6.92828 7.08326 7.22790 7.45178 7.52576 7.94892 8.13482 8.25168 8.59637 9.21008 9.45944 10.04964 10.66492 Molecular weight = 334.99amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.005557 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.427520 B = 5037.877681 C = 6113.998211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.131 3.869 3 N -0.416 5.416 4 C -0.298 4.298 5 H 0.106 0.894 6 C 0.030 3.970 7 N -0.860 5.860 8 Si 0.926 3.074 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.500 3.500 13 O -0.568 6.568 14 C 0.052 3.948 15 N -0.251 5.251 16 N -0.399 5.399 17 H 0.442 0.558 18 C 0.014 3.986 19 C -0.180 4.180 20 I 0.012 6.988 21 H 0.031 0.969 22 H 0.028 0.972 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.268 0.732 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -0.668 -15.324 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 N -0.134 5.134 4 C -0.427 4.427 5 H 0.124 0.876 6 C -0.174 4.174 7 N -0.500 5.500 8 Si 0.752 3.248 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.286 3.714 13 O -0.451 6.451 14 C -0.111 4.111 15 N -0.085 5.085 16 N -0.112 5.112 17 H 0.286 0.714 18 C -0.135 4.135 19 C -0.330 4.330 20 I 0.157 6.843 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.423 0.064 -14.866 14.873 hybrid contribution -0.401 -0.967 0.381 1.114 sum -0.824 -0.902 -14.485 14.537 Atomic orbital electron populations 1.22065 0.96388 0.99231 1.01854 1.21411 0.95121 0.82711 1.00057 1.43702 1.53203 1.11340 1.05106 1.19757 1.31336 1.09839 0.81770 0.87627 1.25321 0.95603 0.97051 0.99436 1.70101 1.23668 1.29334 1.26849 0.85999 0.79691 0.78862 0.80200 1.19729 1.21012 1.19893 1.16650 0.87102 0.85887 0.81751 1.90676 1.49279 1.20234 1.84875 1.22518 1.01045 0.92017 0.95556 1.74252 1.16651 1.18313 0.99318 1.43736 1.43082 1.19534 1.04801 0.71429 1.22717 1.02126 0.90417 0.98228 1.24590 1.11763 1.01879 0.94807 1.96382 1.78881 1.20087 1.88962 0.94971 0.95327 0.89334 0.93737 0.89395 0.92187 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.02 37.16 0.34 -2.75 15 2 C 0.13 3.11 4.87 -4.04 -0.02 3.09 15 3 N -0.42 -11.03 2.64 -115.97 -0.31 -11.34 15 4 C -0.30 -8.31 9.41 -14.99 -0.14 -8.45 15 5 H 0.11 3.06 7.30 -52.49 -0.38 2.68 15 6 C 0.03 0.77 4.97 -17.46 -0.09 0.68 15 7 N -0.86 -22.17 8.30 55.50 0.46 -21.71 15 8 Si 0.93 20.48 29.59 -169.99 -5.03 15.45 15 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 12 C 0.50 12.90 7.57 -12.45 -0.09 12.81 15 13 O -0.57 -15.64 14.91 5.26 0.08 -15.56 15 14 C 0.05 1.12 6.53 -82.78 -0.54 0.58 15 15 N -0.25 -4.66 6.83 33.41 0.23 -4.43 15 16 N -0.40 -5.33 6.86 30.59 0.21 -5.12 15 17 H 0.44 3.83 8.96 -190.44 -1.71 2.12 15 18 C 0.01 0.18 12.03 -16.89 -0.20 -0.02 15 19 C -0.18 -3.21 6.65 -39.33 -0.26 -3.47 15 20 I 0.01 0.21 39.00 -73.02 -2.85 -2.64 15 21 H 0.03 0.71 5.98 -51.93 -0.31 0.40 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.09 2.24 6.01 -51.93 -0.31 1.93 15 24 H 0.04 1.00 6.09 -51.93 -0.32 0.68 15 25 H 0.09 2.22 6.08 -51.93 -0.32 1.90 15 26 H 0.27 6.54 8.31 -40.82 -0.34 6.20 15 27 H 0.18 1.59 8.06 -52.49 -0.42 1.16 15 LS Contribution 255.42 15.07 3.85 3.85 Total: -1.00 -31.15 255.42 -7.69 -38.84 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.32 Total: 0.19 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.01 Total: 2.47 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.59 Total: -42.59 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.08 Total: -15.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 53 Polarization: 0.21 SS G_CDS: -2.85 Total: -2.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.15 -7.69 -38.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320316718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.045 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds