Wall clock time and date at job start Tue Mar 31 2020 18:51:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36934 * 119.99823 * 2 1
4 4 H 1.08004 * 119.99426 * 202.35034 * 3 2 1
5 5 C 1.38806 * 120.00316 * 22.34292 * 3 2 1
6 6 N 1.31616 * 119.99922 * 11.34474 * 5 3 2
7 7 Si 1.86805 * 120.00146 * 191.34975 * 5 3 2
8 8 H 1.48504 * 109.47279 * 59.99886 * 7 5 3
9 9 H 1.48499 * 109.47320 * 180.02562 * 7 5 3
10 10 H 1.48504 * 109.46953 * 299.99860 * 7 5 3
11 11 C 1.46497 * 119.99847 * 179.97438 * 2 1 3
12 12 C 1.53000 * 109.47347 * 270.00092 * 11 2 1
13 13 C 1.52998 * 109.47140 * 180.02562 * 12 11 2
14 14 N 1.46499 * 109.47220 * 179.97438 * 13 12 11
15 15 C 1.46505 * 120.00140 * 270.00196 * 14 13 12
16 16 C 1.34780 * 120.00077 * 89.99856 * 14 13 12
17 17 O 1.21279 * 119.99906 * 359.73028 * 16 14 13
18 18 C 1.50698 * 120.00178 * 180.02562 * 16 14 13
19 19 C 1.52997 * 109.47467 * 300.00630 * 18 16 14
20 20 C 1.53010 * 109.46747 * 299.99953 * 19 18 16
21 21 C 1.52995 * 109.46529 * 299.99817 * 20 19 18
22 22 C 1.53000 * 109.47400 * 299.99847 * 21 20 19
23 23 C 1.52996 * 109.47005 * 60.00572 * 22 21 20
24 24 C 1.52995 * 109.47628 * 179.97438 * 19 18 16
25 25 C 1.52999 * 109.47364 * 59.99962 * 23 22 21
26 26 C 1.52995 * 109.47434 * 179.97438 * 18 16 14
27 27 C 1.52997 * 109.47456 * 60.00618 * 21 20 19
28 28 H 1.08995 * 109.47181 * 274.21331 * 1 2 3
29 29 H 1.08997 * 109.46948 * 34.21356 * 1 2 3
30 30 H 1.09005 * 109.47211 * 154.21437 * 1 2 3
31 31 H 0.97008 * 120.00024 * 179.97438 * 6 5 3
32 32 H 1.08997 * 109.47145 * 149.99735 * 11 2 1
33 33 H 1.09006 * 109.46972 * 30.00087 * 11 2 1
34 34 H 1.08999 * 109.46788 * 59.99860 * 12 11 2
35 35 H 1.08999 * 109.46746 * 300.00107 * 12 11 2
36 36 H 1.09008 * 109.47220 * 60.00166 * 13 12 11
37 37 H 1.08995 * 109.47365 * 300.00179 * 13 12 11
38 38 H 1.08993 * 109.47029 * 270.00091 * 15 14 13
39 39 H 1.09004 * 109.46889 * 29.99586 * 15 14 13
40 40 H 1.08999 * 109.47055 * 149.99805 * 15 14 13
41 41 H 1.09002 * 109.46767 * 60.00062 * 18 16 14
42 42 H 1.09007 * 109.47446 * 59.99434 * 19 18 16
43 43 H 1.08998 * 109.46945 * 59.99535 * 20 19 18
44 44 H 1.08993 * 109.46947 * 180.02562 * 20 19 18
45 45 H 1.09007 * 109.46986 * 179.97438 * 21 20 19
46 46 H 1.09001 * 109.47335 * 300.00188 * 22 21 20
47 47 H 1.09007 * 109.47215 * 180.02562 * 22 21 20
48 48 H 1.08998 * 109.47274 * 180.02562 * 23 22 21
49 49 H 1.09000 * 109.47283 * 300.00068 * 24 19 18
50 50 H 1.09001 * 109.47518 * 179.97438 * 24 19 18
51 51 H 1.09002 * 109.47177 * 180.02562 * 25 23 22
52 52 H 1.08997 * 109.47312 * 60.00040 * 25 23 22
53 53 H 1.08993 * 109.47226 * 300.00714 * 26 18 16
54 54 H 1.09007 * 109.47446 * 179.97438 * 27 21 20
55 55 H 1.08998 * 109.47778 * 59.99204 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1688 1.2210 -0.3557
5 6 1.5338 2.3429 0.4570
6 7 0.3841 2.2691 1.0934
7 14 2.3366 4.0048 0.1685
8 1 2.4915 4.2331 -1.2907
9 1 1.4850 5.0735 0.7496
10 1 3.6720 4.0288 0.8178
11 6 2.1975 -1.2687 0.0006
12 6 2.4525 -1.7098 1.4432
13 6 3.2180 -3.0345 1.4438
14 7 3.4627 -3.4566 2.8251
15 6 4.6835 -3.0328 3.5153
16 6 2.5646 -4.2347 3.4612
17 8 1.5516 -4.5815 2.8916
18 6 2.8160 -4.6684 4.8824
19 6 4.1151 -5.4741 4.9476
20 6 3.9951 -6.7084 4.0513
21 6 2.8315 -7.5770 4.5329
22 6 3.0867 -8.0174 5.9758
23 6 3.2066 -6.7831 6.8720
24 6 4.3707 -5.9138 6.3905
25 6 1.9076 -5.9774 6.8069
26 6 1.6521 -5.5366 5.3642
27 6 1.5324 -6.7714 4.4677
28 1 -0.3633 0.0755 1.0248
29 1 -0.3633 0.8498 -0.5778
30 1 -0.3634 -0.9254 -0.4471
31 1 -0.0461 3.0776 1.4131
32 1 3.1498 -1.1387 -0.5133
33 1 1.6083 -2.0286 -0.5130
34 1 1.5000 -1.8399 1.9571
35 1 3.0415 -0.9499 1.9567
36 1 4.1705 -2.9040 0.9300
37 1 2.6293 -3.7945 0.9301
38 1 5.4710 -3.7667 3.3442
39 1 5.0005 -2.0634 3.1305
40 1 4.4874 -2.9528 4.5845
41 1 2.9015 -3.7891 5.5208
42 1 4.9442 -4.8551 4.6044
43 1 3.8132 -6.3946 3.0234
44 1 4.9204 -7.2826 4.0981
45 1 2.7457 -8.4562 3.8942
46 1 4.0121 -8.5914 6.0222
47 1 2.2578 -8.6366 6.3188
48 1 3.3889 -7.0968 7.8998
49 1 4.4563 -5.0343 7.0286
50 1 5.2959 -6.4882 6.4368
51 1 1.9933 -5.0978 7.4450
52 1 1.0786 -6.5963 7.1499
53 1 0.7269 -4.9623 5.3178
54 1 0.7033 -7.3905 4.8104
55 1 1.3505 -6.4577 3.4398
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327212348.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:51:21
Heat of formation + Delta-G solvation = -51.417296 kcal
Electronic energy + Delta-G solvation = -31075.893719 eV
Core-core repulsion = 27304.302463 eV
Total energy + Delta-G solvation = -3771.591255 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 334.236 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-42.84730 -40.17756 -37.93157 -36.78664 -34.50695 -33.55856 -33.43502 -33.31989
-31.79876 -28.24407 -27.93754 -27.84756 -26.73808 -26.21079 -23.99245 -22.55837
-22.39496 -22.28820 -21.92239 -20.25143 -18.78185 -18.51450 -17.76215 -17.12512
-16.65944 -16.55657 -16.08298 -15.83363 -15.46392 -15.29950 -15.08653 -14.90467
-14.62514 -14.49333 -14.28278 -14.19020 -14.15355 -13.86891 -13.71843 -13.50005
-13.33114 -13.19249 -13.04812 -12.77316 -12.69843 -12.52651 -12.48900 -12.28102
-12.19635 -12.07144 -11.89925 -11.80926 -11.75349 -11.68940 -11.63542 -11.42607
-11.03312 -10.65558 -10.56797 -10.51375 -10.20374 -9.60279 -8.80304 -7.83092
-5.32227 1.45312 1.48889 1.55487 1.69120 2.10329 2.50994 3.30997
3.44559 3.52714 3.59814 3.68458 3.88335 4.08024 4.14980 4.19362
4.22288 4.22883 4.34517 4.36397 4.37744 4.42463 4.46838 4.49831
4.53984 4.57759 4.61994 4.69257 4.77190 4.78786 4.82199 4.82665
4.86386 4.88297 4.96630 4.98416 5.09602 5.13663 5.16204 5.21990
5.22970 5.24715 5.25327 5.26565 5.35772 5.42684 5.52944 5.59792
5.62025 5.62220 5.64233 5.66264 5.69099 6.31824 6.48207 7.12963
7.26954 7.85111 8.31305 9.21382
Molecular weight = 334.24amu
Principal moments of inertia in cm(-1)
A = 0.022169 B = 0.002560 C = 0.002527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.748197 B =10936.569278 C =11079.160487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.180 3.820
2 N -0.622 5.622
3 C -0.262 4.262
4 H 0.077 0.923
5 C -0.060 4.060
6 N -0.945 5.945
7 Si 0.974 3.026
8 H -0.277 1.277
9 H -0.297 1.297
10 H -0.271 1.271
11 C 0.153 3.847
12 C -0.127 4.127
13 C 0.127 3.873
14 N -0.616 5.616
15 C 0.069 3.931
16 C 0.511 3.489
17 O -0.579 6.579
18 C -0.091 4.091
19 C -0.083 4.083
20 C -0.107 4.107
21 C -0.085 4.085
22 C -0.102 4.102
23 C -0.085 4.085
24 C -0.102 4.102
25 C -0.105 4.105
26 C -0.067 4.067
27 C -0.118 4.118
28 H -0.005 1.005
29 H 0.021 0.979
30 H 0.023 0.977
31 H 0.247 0.753
32 H 0.061 0.939
33 H 0.048 0.952
34 H 0.016 0.984
35 H 0.043 0.957
36 H 0.101 0.899
37 H 0.065 0.935
38 H 0.085 0.915
39 H 0.073 0.927
40 H 0.085 0.915
41 H 0.101 0.899
42 H 0.099 0.901
43 H 0.035 0.965
44 H 0.083 0.917
45 H 0.063 0.937
46 H 0.075 0.925
47 H 0.060 0.940
48 H 0.087 0.913
49 H 0.074 0.926
50 H 0.083 0.917
51 H 0.068 0.932
52 H 0.065 0.935
53 H 0.043 0.957
54 H 0.054 0.946
55 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.211 -21.890 13.319 28.828
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 N -0.345 5.345
3 C -0.392 4.392
4 H 0.095 0.905
5 C -0.254 4.254
6 N -0.592 5.592
7 Si 0.802 3.198
8 H -0.203 1.203
9 H -0.223 1.223
10 H -0.197 1.197
11 C 0.026 3.974
12 C -0.169 4.169
13 C 0.003 3.997
14 N -0.347 5.347
15 C -0.072 4.072
16 C 0.301 3.699
17 O -0.460 6.460
18 C -0.112 4.112
19 C -0.101 4.101
20 C -0.144 4.144
21 C -0.104 4.104
22 C -0.140 4.140
23 C -0.103 4.103
24 C -0.139 4.139
25 C -0.142 4.142
26 C -0.086 4.086
27 C -0.156 4.156
28 H 0.013 0.987
29 H 0.040 0.960
30 H 0.041 0.959
31 H 0.056 0.944
32 H 0.079 0.921
33 H 0.066 0.934
34 H 0.035 0.965
35 H 0.062 0.938
36 H 0.120 0.880
37 H 0.084 0.916
38 H 0.104 0.896
39 H 0.091 0.909
40 H 0.104 0.896
41 H 0.118 0.882
42 H 0.117 0.883
43 H 0.054 0.946
44 H 0.101 0.899
45 H 0.082 0.918
46 H 0.094 0.906
47 H 0.079 0.921
48 H 0.105 0.895
49 H 0.093 0.907
50 H 0.102 0.898
51 H 0.087 0.913
52 H 0.084 0.916
53 H 0.061 0.939
54 H 0.073 0.927
55 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 12.605 -21.939 13.056 28.472
hybrid contribution -0.712 1.430 -0.328 1.631
sum 11.893 -20.509 12.728 26.909
Atomic orbital electron populations
1.20490 0.83270 0.95696 0.97086 1.44248 1.02006 1.02116 1.86126
1.19575 0.98291 0.86392 1.34903 0.90520 1.25901 0.98491 1.02240
0.98759 1.70275 1.19514 1.27494 1.41885 0.85234 0.77678 0.78961
0.77919 1.20282 1.22309 1.19676 1.20915 0.96071 0.86493 0.93892
1.22275 0.98246 0.96483 0.99883 1.21370 1.00899 0.94805 0.82581
1.48030 1.22307 1.49997 1.14403 1.22211 0.85609 1.01216 0.98210
1.21255 0.82096 0.77067 0.89524 1.90607 1.28754 1.57350 1.69254
1.21344 0.98635 0.99866 0.91315 1.21340 0.95006 0.96138 0.97634
1.21528 0.98876 0.96504 0.97520 1.21044 0.94274 0.97400 0.97662
1.21520 1.02028 0.97060 0.93368 1.21102 0.94358 0.95113 0.99773
1.21561 0.98404 1.00110 0.93872 1.21554 0.98408 1.00205 0.94032
1.20790 0.95900 0.95709 0.96175 1.21700 0.97626 0.95946 1.00317
0.98664 0.96013 0.95902 0.94421 0.92070 0.93376 0.96513 0.93769
0.88036 0.91620 0.89644 0.90857 0.89643 0.88155 0.88288 0.94630
0.89892 0.91814 0.90617 0.92085 0.89461 0.90730 0.89798 0.91327
0.91640 0.93862 0.92744 0.92571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.79 9.01 127.77 1.15 10.94 16
2 N -0.62 -33.20 2.93 -726.94 -2.13 -35.33 16
3 C -0.26 -14.75 9.67 84.03 0.81 -13.94 16
4 H 0.08 4.09 7.84 -2.91 -0.02 4.06 16
5 C -0.06 -3.44 5.13 84.86 0.44 -3.01 16
6 N -0.94 -58.38 10.58 21.65 0.23 -58.15 16
7 Si 0.97 45.77 29.57 68.60 2.03 47.80 16
8 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
9 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16
10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16
11 C 0.15 6.48 5.71 86.38 0.49 6.98 16
12 C -0.13 -5.10 5.86 30.59 0.18 -4.92 16
13 C 0.13 3.84 5.40 86.38 0.47 4.31 16
14 N -0.62 -16.49 2.87 -846.75 -2.43 -18.93 16
15 C 0.07 1.22 8.80 127.77 1.12 2.34 16
16 C 0.51 15.27 5.56 87.66 0.49 15.76 16
17 O -0.58 -22.55 13.25 -3.03 -0.04 -22.59 16
18 C -0.09 -1.97 1.47 -11.54 -0.02 -1.99 16
19 C -0.08 -1.25 2.36 -10.79 -0.03 -1.27 16
20 C -0.11 -1.83 4.97 30.60 0.15 -1.68 16
21 C -0.09 -1.55 3.19 -10.80 -0.03 -1.58 16
22 C -0.10 -1.35 5.19 30.59 0.16 -1.19 16
23 C -0.09 -1.04 3.20 -10.78 -0.03 -1.07 16
24 C -0.10 -1.10 5.20 30.61 0.16 -0.94 16
25 C -0.10 -1.70 5.19 30.59 0.16 -1.54 16
26 C -0.07 -1.54 2.37 -10.78 -0.03 -1.57 16
27 C -0.12 -2.86 4.90 30.61 0.15 -2.71 16
28 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16
29 H 0.02 1.23 7.19 -2.39 -0.02 1.22 16
30 H 0.02 1.08 7.84 -2.38 -0.02 1.07 16
31 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16
32 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16
33 H 0.05 1.92 7.86 -2.38 -0.02 1.90 16
34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16
36 H 0.10 2.46 8.07 -2.38 -0.02 2.44 16
37 H 0.07 2.17 7.43 -2.39 -0.02 2.15 16
38 H 0.09 1.04 6.95 -2.39 -0.02 1.02 16
39 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16
40 H 0.09 1.26 6.01 -2.39 -0.01 1.24 16
41 H 0.10 2.01 7.40 -2.39 -0.02 1.99 16
42 H 0.10 1.21 4.53 -2.38 -0.01 1.20 16
43 H 0.03 0.79 7.22 -2.39 -0.02 0.78 16
44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
45 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16
46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
47 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
48 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
50 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
52 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
53 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16
54 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16
55 H 0.06 1.78 5.52 -2.39 -0.01 1.76 16
Total: -1.00 -73.97 395.22 4.29 -69.68
By element:
Atomic # 1 Polarization: 13.75 SS G_CDS: 0.84 Total: 14.58 kcal
Atomic # 6 Polarization: -2.86 SS G_CDS: 5.79 Total: 2.93 kcal
Atomic # 7 Polarization: -108.08 SS G_CDS: -4.33 Total: -112.41 kcal
Atomic # 8 Polarization: -22.55 SS G_CDS: -0.04 Total: -22.59 kcal
Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal
Total: -73.97 4.29 -69.68 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327212348.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.265 kcal
(2) G-P(sol) polarization free energy of solvation -73.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds