Wall clock time and date at job start Tue Mar 31 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47309 * 2 1 4 4 C 1.53004 * 109.46970 * 239.99756 * 2 1 3 5 5 C 1.52995 * 109.46800 * 188.88460 * 4 2 1 6 6 C 1.50699 * 110.01828 * 59.08659 * 5 4 2 7 7 O 1.21282 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00264 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47366 * 179.97438 * 9 8 6 11 11 H 1.08997 * 115.51294 * 330.58227 * 10 9 8 12 12 C 1.52998 * 117.44197 * 185.17003 * 10 9 8 13 13 H 1.08999 * 119.54072 * 4.11962 * 12 10 9 14 14 C 1.54385 * 118.12236 * 160.81113 * 12 10 9 15 15 N 1.48006 * 104.64982 * 87.21360 * 14 12 10 16 16 C 1.36942 * 127.84270 * 140.40691 * 15 14 12 17 17 H 1.08001 * 119.99840 * 196.05876 * 16 15 14 18 18 C 1.38807 * 119.99965 * 16.04472 * 16 15 14 19 19 N 1.31623 * 119.99774 * 9.39850 * 18 16 15 20 20 Si 1.86797 * 120.00191 * 189.38842 * 18 16 15 21 21 H 1.48491 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47019 * 120.00895 * 20 18 16 23 23 H 1.48507 * 109.47351 * 240.00493 * 20 18 16 24 24 C 1.48149 * 104.32325 * 320.45813 * 15 14 12 25 25 C 1.52994 * 117.44072 * 116.00069 * 10 9 8 26 26 H 1.09005 * 119.54237 * 355.88125 * 25 10 9 27 27 C 1.54259 * 110.03495 * 297.68917 * 5 4 2 28 28 C 1.54970 * 104.16514 * 217.14100 * 27 5 4 29 29 C 1.54895 * 102.77512 * 37.88661 * 28 27 5 30 30 C 1.53884 * 110.02723 * 180.47372 * 5 4 2 31 31 H 1.08999 * 109.47030 * 59.99985 * 1 2 3 32 32 H 1.09001 * 109.47575 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46921 * 300.00069 * 1 2 3 34 34 H 1.08999 * 109.47030 * 120.00014 * 2 1 3 35 35 H 1.09004 * 109.47373 * 45.28732 * 3 2 1 36 36 H 1.09000 * 109.47557 * 165.28670 * 3 2 1 37 37 H 1.09004 * 109.47346 * 285.28634 * 3 2 1 38 38 H 1.09002 * 109.46870 * 308.88309 * 4 2 1 39 39 H 1.08993 * 109.46873 * 68.88349 * 4 2 1 40 40 H 0.97006 * 119.99887 * 359.97438 * 8 6 5 41 41 H 1.08997 * 109.47039 * 299.99833 * 9 8 6 42 42 H 1.09000 * 109.46646 * 59.99884 * 9 8 6 43 43 H 1.08999 * 110.40876 * 205.97142 * 14 12 10 44 44 H 1.09000 * 110.40734 * 328.40264 * 14 12 10 45 45 H 0.97000 * 120.00197 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.40665 * 280.75334 * 24 15 14 47 47 H 1.08997 * 110.40664 * 158.31519 * 24 15 14 48 48 H 1.09003 * 110.49051 * 335.78498 * 27 5 4 49 49 H 1.08997 * 110.48777 * 98.42858 * 27 5 4 50 50 H 1.09002 * 110.71722 * 279.57892 * 28 27 5 51 51 H 1.08997 * 110.76486 * 156.22139 * 28 27 5 52 52 H 1.08994 * 110.48635 * 203.41102 * 29 28 27 53 53 H 1.09004 * 110.59686 * 80.81744 * 29 28 27 54 54 H 1.08997 * 110.02811 * 238.56558 * 30 5 4 55 55 H 1.08991 * 110.03307 * 359.95378 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5536 -0.9171 -1.1428 6 6 3.8843 -1.7230 0.0869 7 8 2.9955 -2.1084 0.8165 8 7 5.1679 -2.0145 0.3765 9 6 5.4895 -2.7974 1.5723 10 6 7.0050 -2.9857 1.6663 11 1 7.5360 -3.0024 0.7146 12 6 7.5359 -3.8833 2.7858 13 1 6.8330 -4.4096 3.4316 14 6 8.9647 -4.4515 2.6473 15 7 9.8402 -3.4079 3.2260 16 6 10.9481 -3.5818 4.0120 17 1 11.3445 -2.7516 4.5777 18 6 11.5613 -4.8251 4.0818 19 7 11.1975 -5.7855 3.2585 20 14 12.9031 -5.1353 5.3439 21 1 13.1246 -3.9039 6.1436 22 1 12.4899 -6.2419 6.2439 23 1 14.1612 -5.5070 4.6478 24 6 9.2455 -2.1324 2.7632 25 6 7.7210 -2.3549 2.8623 26 1 7.1560 -1.7425 3.5651 27 6 4.2608 0.4525 -1.0831 28 6 5.5602 0.2445 -1.9015 29 6 5.0923 -0.6710 -3.0601 30 6 4.0822 -1.6315 -2.3991 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.4795 2.0260 0.7303 36 1 3.0983 1.4537 0.2610 37 1 1.9057 1.8753 -0.9913 38 1 1.5528 -1.6929 -1.3321 39 1 1.8120 -0.1241 -2.1321 40 1 5.8789 -1.7058 -0.2068 41 1 5.1328 -2.2714 2.4577 42 1 5.0059 -3.7722 1.5092 43 1 9.0602 -5.3810 3.2085 44 1 9.2091 -4.6135 1.5974 45 1 11.6262 -6.6542 3.3070 46 1 9.5339 -1.9309 1.7316 47 1 9.5529 -1.3123 3.4120 48 1 3.6404 1.2226 -1.5418 49 1 4.4965 0.7155 -0.0519 50 1 6.3200 -0.2531 -1.2988 51 1 5.9312 1.1946 -2.2856 52 1 5.9349 -1.2271 -3.4709 53 1 4.6067 -0.0845 -3.8401 54 1 4.5788 -2.5606 -2.1191 55 1 3.2603 -1.8394 -3.0840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330346325.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:37 Heat of formation + Delta-G solvation = -12.916914 kcal Electronic energy + Delta-G solvation = -30043.075563 eV Core-core repulsion = 26273.153809 eV Total energy + Delta-G solvation = -3769.921753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.88565 -40.47747 -38.55637 -36.83373 -35.99974 -34.81523 -32.70545 -31.25372 -30.08550 -29.02285 -28.81809 -27.71242 -26.88059 -25.71126 -23.27453 -22.52388 -21.84419 -21.44100 -20.96771 -20.87342 -20.07407 -18.84261 -17.94275 -17.29790 -16.79636 -16.39191 -16.20064 -16.10662 -15.63278 -15.33961 -15.25221 -14.91444 -14.69588 -14.60852 -14.50715 -14.18945 -13.92324 -13.50145 -13.39294 -13.20463 -13.13998 -12.94306 -12.91845 -12.77439 -12.72887 -12.45743 -12.30120 -12.11743 -11.99407 -11.97360 -11.92671 -11.78518 -11.59818 -11.51290 -11.29512 -11.20889 -10.99772 -10.96138 -10.71391 -10.68270 -10.34360 -9.97786 -8.91479 -7.93330 -5.29507 1.45501 1.46528 1.57334 1.66343 2.14265 2.46479 2.72533 3.24938 3.52863 3.60310 3.63591 3.65066 3.70154 3.83889 4.06374 4.12687 4.18421 4.19744 4.25065 4.29465 4.40768 4.49529 4.50407 4.54747 4.61211 4.63432 4.67597 4.73623 4.78949 4.84823 4.87153 4.92582 4.95697 4.98934 5.00901 5.04576 5.08863 5.11870 5.19608 5.21407 5.27128 5.30247 5.32916 5.39278 5.41218 5.44003 5.47684 5.51566 5.51855 5.56255 5.64507 5.72916 6.16875 6.58632 7.00118 7.29139 7.67215 8.45568 9.20833 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.002239 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.967674 B =12500.085151 C =12871.448756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.074 4.074 6 C 0.519 3.481 7 O -0.574 6.574 8 N -0.716 5.716 9 C 0.163 3.837 10 C -0.109 4.109 11 H 0.107 0.893 12 C -0.177 4.177 13 H 0.111 0.889 14 C 0.191 3.809 15 N -0.620 5.620 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.149 3.851 25 C -0.159 4.159 26 H 0.123 0.877 27 C -0.112 4.112 28 C -0.133 4.133 29 C -0.119 4.119 30 C -0.116 4.116 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.410 0.590 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.003 0.997 45 H 0.250 0.750 46 H 0.029 0.971 47 H 0.057 0.943 48 H 0.102 0.898 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.072 0.928 53 H 0.082 0.918 54 H 0.058 0.942 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 15.256 -14.288 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.215 4.215 4 C -0.119 4.119 5 C -0.077 4.077 6 C 0.307 3.693 7 O -0.453 6.453 8 N -0.369 5.369 9 C 0.039 3.961 10 C -0.128 4.128 11 H 0.125 0.875 12 C -0.197 4.197 13 H 0.129 0.871 14 C 0.065 3.935 15 N -0.344 5.344 16 C -0.368 4.368 17 H 0.099 0.901 18 C -0.257 4.257 19 N -0.595 5.595 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.024 3.976 25 C -0.178 4.178 26 H 0.141 0.859 27 C -0.149 4.149 28 C -0.171 4.171 29 C -0.156 4.156 30 C -0.154 4.154 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.247 0.753 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.105 0.895 52 H 0.091 0.909 53 H 0.101 0.899 54 H 0.076 0.924 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.073 14.828 -13.663 27.755 hybrid contribution 1.154 -0.863 0.722 1.612 sum -17.920 13.964 -12.941 26.145 Atomic orbital electron populations 1.21767 0.95240 1.00992 1.01739 1.21353 0.95946 0.96659 0.99252 1.22374 1.01931 0.95191 1.02035 1.21526 0.91535 1.00427 0.98378 1.21492 0.98013 0.96136 0.92090 1.21112 0.81776 0.79376 0.87018 1.90625 1.47441 1.54646 1.52638 1.46082 1.08416 1.55255 1.27131 1.20639 0.91706 0.95672 0.88096 1.22398 0.93858 1.02341 0.94213 0.87470 1.23895 0.98623 0.94310 1.02869 0.87071 1.20743 0.85258 0.92723 0.94785 1.45497 1.29051 1.01698 1.58179 1.19413 1.02751 0.96601 1.18057 0.90146 1.25751 1.01695 0.97030 1.01253 1.70103 1.46007 1.03972 1.39440 0.85006 0.78148 0.77885 0.78235 1.18850 1.21850 1.21749 1.21294 0.90193 0.89078 0.97039 1.23896 0.96201 0.96258 1.01480 0.85938 1.22933 0.96619 0.94810 1.00535 1.22705 0.96703 1.00804 0.96854 1.22367 0.98291 0.97111 0.97842 1.22308 0.99873 0.98418 0.94824 0.91762 0.93910 0.93159 0.91568 0.93573 0.91450 0.91256 0.93106 0.89287 0.75252 0.91670 0.91721 0.93114 0.97953 0.94127 0.95353 0.92452 0.88016 0.91633 0.91972 0.89550 0.90940 0.89927 0.92361 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.13 71.98 0.66 -1.69 16 2 C -0.11 -2.10 2.63 -10.80 -0.03 -2.13 16 3 C -0.16 -2.27 7.65 71.98 0.55 -1.72 16 4 C -0.08 -1.32 3.25 30.59 0.10 -1.22 16 5 C -0.07 -1.19 0.57 -52.20 -0.03 -1.22 16 6 C 0.52 12.10 5.83 87.66 0.51 12.61 16 7 O -0.57 -17.73 13.72 -3.03 -0.04 -17.77 16 8 N -0.72 -15.53 5.21 -463.06 -2.41 -17.94 16 9 C 0.16 4.17 5.95 86.38 0.51 4.69 16 10 C -0.11 -3.15 5.40 -10.80 -0.06 -3.20 16 11 H 0.11 3.04 8.04 -2.39 -0.02 3.02 16 12 C -0.18 -6.57 6.85 -9.94 -0.07 -6.64 16 13 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 14 C 0.19 9.36 5.68 86.56 0.49 9.85 16 15 N -0.62 -31.98 3.37 -688.52 -2.32 -34.30 16 16 C -0.24 -13.45 10.35 84.03 0.87 -12.58 16 17 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 18 C -0.06 -3.62 5.39 84.86 0.46 -3.17 16 19 N -0.95 -57.12 10.90 21.65 0.24 -56.88 16 20 Si 0.98 45.57 29.56 68.60 2.03 47.59 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 24 C 0.15 6.01 7.04 86.53 0.61 6.62 16 25 C -0.16 -5.27 6.74 -9.94 -0.07 -5.34 16 26 H 0.12 3.64 8.12 -2.38 -0.02 3.62 16 27 C -0.11 -1.38 3.71 31.69 0.12 -1.27 16 28 C -0.13 -1.41 6.52 31.92 0.21 -1.20 16 29 C -0.12 -1.18 6.83 31.67 0.22 -0.96 16 30 C -0.12 -1.55 5.92 31.32 0.19 -1.37 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 1.70 5.32 -2.39 -0.01 1.69 16 35 H 0.05 0.67 8.06 -2.39 -0.02 0.65 16 36 H 0.07 0.97 4.65 -2.39 -0.01 0.96 16 37 H 0.07 0.75 7.23 -2.39 -0.02 0.73 16 38 H 0.05 0.99 8.11 -2.39 -0.02 0.97 16 39 H 0.09 1.05 7.97 -2.39 -0.02 1.03 16 40 H 0.41 7.36 6.00 -92.70 -0.56 6.80 16 41 H 0.07 1.75 7.94 -2.39 -0.02 1.73 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 2.85 6.56 -2.39 -0.02 2.83 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 48 H 0.10 0.98 5.80 -2.39 -0.01 0.97 16 49 H 0.07 0.97 6.36 -2.39 -0.02 0.95 16 50 H 0.06 0.73 6.40 -2.39 -0.02 0.72 16 51 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 54 H 0.06 0.92 7.52 -2.39 -0.02 0.90 16 55 H 0.08 0.97 7.67 -2.39 -0.02 0.95 16 Total: -1.00 -68.57 406.98 3.03 -65.54 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.30 Total: 23.68 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 5.24 Total: -9.93 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.50 Total: -109.12 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.04 Total: -17.77 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.57 3.03 -65.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330346325.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.625 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds