Wall clock time and date at job start Tue Mar 31 2020 18:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.78581 * 2 1 4 4 C 1.53238 * 109.62917 * 239.51448 * 2 1 3 5 5 N 1.46898 * 109.33943 * 186.45890 * 4 2 1 6 6 C 1.46898 * 110.99765 * 187.25306 * 5 4 2 7 7 C 1.50700 * 109.47048 * 164.41868 * 6 5 4 8 8 C 1.35320 * 126.04478 * 98.92002 * 7 6 5 9 9 N 1.34946 * 107.74595 * 180.02562 * 8 7 6 10 10 C 1.46503 * 126.03567 * 179.97438 * 9 8 7 11 11 N 1.40085 * 107.92775 * 359.97438 * 9 8 7 12 12 C 1.30836 * 108.20647 * 0.02562 * 11 9 8 13 13 C 1.50694 * 125.90026 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47294 * 353.90308 * 13 12 11 15 15 C 1.53004 * 109.47234 * 113.90144 * 13 12 11 16 16 C 1.52999 * 109.47597 * 233.90222 * 13 12 11 17 17 C 1.46903 * 111.27059 * 63.10743 * 5 4 2 18 18 C 1.53235 * 109.33608 * 296.89422 * 17 5 4 19 19 H 1.09001 * 109.63133 * 173.54210 * 18 17 5 20 20 C 1.53007 * 109.63142 * 294.12023 * 18 17 5 21 21 N 1.47077 * 109.62955 * 120.48471 * 2 1 3 22 22 C 1.36937 * 120.88133 * 350.87189 * 21 2 1 23 23 H 1.08002 * 119.99887 * 29.45428 * 22 21 2 24 24 C 1.38812 * 120.00045 * 209.45344 * 22 21 2 25 25 N 1.31623 * 120.00122 * 13.43117 * 24 22 21 26 26 Si 1.86799 * 120.00037 * 193.43304 * 24 22 21 27 27 H 1.48493 * 109.47322 * 89.99990 * 26 24 22 28 28 H 1.48496 * 109.47160 * 210.00239 * 26 24 22 29 29 H 1.48503 * 109.47006 * 329.99819 * 26 24 22 30 30 H 1.09000 * 109.46670 * 180.48447 * 1 2 3 31 31 H 1.09002 * 109.47176 * 300.48613 * 1 2 3 32 32 H 1.08996 * 109.47011 * 60.48311 * 1 2 3 33 33 H 1.09005 * 109.49399 * 66.49775 * 4 2 1 34 34 H 1.08999 * 109.49303 * 306.41931 * 4 2 1 35 35 H 1.08998 * 109.47559 * 44.41898 * 6 5 4 36 36 H 1.09004 * 109.47304 * 284.41508 * 6 5 4 37 37 H 1.07996 * 126.12085 * 359.97438 * 8 7 6 38 38 H 1.08999 * 109.47090 * 270.02618 * 10 9 8 39 39 H 1.09007 * 109.46852 * 30.02368 * 10 9 8 40 40 H 1.09002 * 109.46946 * 150.01976 * 10 9 8 41 41 H 1.09005 * 109.47066 * 59.99643 * 14 13 12 42 42 H 1.09000 * 109.47276 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.46721 * 300.00378 * 14 13 12 44 44 H 1.08998 * 109.46776 * 66.21240 * 15 13 12 45 45 H 1.09000 * 109.47330 * 186.21638 * 15 13 12 46 46 H 1.09006 * 109.47004 * 306.21312 * 15 13 12 47 47 H 1.09007 * 109.46702 * 52.01257 * 16 13 12 48 48 H 1.09001 * 109.47472 * 172.00903 * 16 13 12 49 49 H 1.08998 * 109.47096 * 292.01813 * 16 13 12 50 50 H 1.09002 * 109.49302 * 56.85187 * 17 5 4 51 51 H 1.09002 * 109.49258 * 176.93207 * 17 5 4 52 52 H 1.08995 * 109.47332 * 179.03541 * 20 18 17 53 53 H 1.09001 * 109.46415 * 299.03189 * 20 18 17 54 54 H 1.08992 * 109.47138 * 59.02549 * 20 18 17 55 55 H 0.96994 * 119.99807 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5054 -0.8643 -1.1608 6 6 4.0568 -1.4061 -2.4100 7 6 5.5456 -1.1751 -2.4438 8 6 6.4994 -2.0822 -2.1297 9 7 7.7004 -1.4871 -2.2864 10 6 9.0068 -2.1079 -2.0532 11 7 7.4774 -0.1711 -2.7115 12 6 6.1857 0.0149 -2.8053 13 6 5.5052 1.2908 -3.2292 14 6 6.5502 2.3965 -3.3920 15 6 4.7873 1.0675 -4.5618 16 6 4.4871 1.7040 -2.1645 17 6 3.9016 -1.6871 -0.0101 18 6 3.4630 -0.9940 1.2842 19 1 3.6509 -1.6511 2.1333 20 6 4.2416 0.3117 1.4575 21 7 2.0241 -0.7028 1.1938 22 6 1.1673 -1.0757 2.1948 23 1 0.1371 -1.3057 1.9660 24 6 1.6228 -1.1581 3.5035 25 7 2.7846 -0.6328 3.8303 26 14 0.5869 -2.0145 4.8008 27 1 0.9445 -3.4549 4.8482 28 1 0.8439 -1.3968 6.1265 29 1 -0.8512 -1.8724 4.4590 30 1 -0.3633 -1.0276 0.0087 31 1 -0.3634 0.5214 0.8856 32 1 -0.3633 0.5063 -0.8943 33 1 1.7810 -0.1638 -2.1357 34 1 1.5924 -1.7225 -1.2962 35 1 3.5921 -0.9056 -3.2595 36 1 3.8538 -2.4758 -2.4630 37 1 6.3297 -3.0997 -1.8099 38 1 9.3039 -1.9506 -1.0164 39 1 8.9420 -3.1773 -2.2544 40 1 9.7463 -1.6578 -2.7155 41 1 7.2755 2.1022 -4.1505 42 1 6.0579 3.3193 -3.6991 43 1 7.0616 2.5555 -2.4426 44 1 3.9702 0.3602 -4.4202 45 1 4.3888 2.0155 -4.9232 46 1 5.4916 0.6677 -5.2914 47 1 4.9710 1.7253 -1.1880 48 1 4.0981 2.6949 -2.3989 49 1 3.6670 0.9862 -2.1480 50 1 3.4234 -2.6641 -0.0797 51 1 4.9846 -1.8112 -0.0074 52 1 3.9154 0.8109 2.3699 53 1 5.3074 0.0929 1.5242 54 1 4.0569 0.9612 0.6019 55 1 3.1030 -0.6908 4.7446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331567637.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:13 Heat of formation + Delta-G solvation = 92.782904 kcal Electronic energy + Delta-G solvation = -32126.632259 eV Core-core repulsion = 28393.586745 eV Total energy + Delta-G solvation = -3733.045514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.28480 -39.96287 -37.74475 -36.35879 -34.22857 -33.52665 -33.04334 -31.45644 -29.58563 -28.35016 -27.96249 -27.91105 -27.25744 -26.56425 -25.45515 -23.44743 -22.66553 -22.11818 -21.13757 -20.25778 -19.26727 -17.93319 -17.37371 -17.10903 -16.44987 -16.16593 -15.90011 -15.60505 -15.55574 -15.41817 -14.98727 -14.86619 -14.76947 -14.39827 -14.05533 -13.94491 -13.53671 -13.43949 -13.29086 -13.22810 -12.97652 -12.86533 -12.79730 -12.77421 -12.72289 -12.51361 -12.33663 -12.18954 -12.16897 -12.10134 -11.86973 -11.73663 -11.70669 -11.65481 -11.52255 -11.13983 -11.05423 -10.90417 -10.39510 -10.04676 -9.21010 -8.93964 -8.40443 -7.71561 -5.17402 1.04452 1.48336 1.50179 1.57345 1.76583 1.88741 2.57800 3.29792 3.43405 3.62282 3.71366 3.88320 4.11485 4.15688 4.24695 4.28163 4.37193 4.44342 4.46545 4.49551 4.57880 4.65635 4.68574 4.71994 4.73982 4.79877 4.85511 4.89137 4.95849 4.97714 4.99527 5.01364 5.04129 5.09771 5.14484 5.18324 5.22583 5.30086 5.31216 5.36582 5.38613 5.42096 5.53025 5.61270 5.65667 5.77007 5.82731 5.87578 5.90567 6.06997 6.24712 6.40722 6.49208 6.57452 6.91676 7.31881 8.03423 8.57108 9.32560 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.003928 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.440642 B = 7127.044228 C = 7956.055463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.018 0.982 4 C 0.057 3.943 5 N -0.518 5.518 6 C 0.133 3.867 7 C -0.229 4.229 8 C 0.053 3.947 9 N -0.386 5.386 10 C 0.098 3.902 11 N -0.332 5.332 12 C 0.101 3.899 13 C 0.014 3.986 14 C -0.128 4.128 15 C -0.130 4.130 16 C -0.130 4.130 17 C 0.065 3.935 18 C 0.203 3.797 19 H 0.048 0.952 20 C -0.110 4.110 21 N -0.598 5.598 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.049 4.049 25 N -0.925 5.925 26 Si 0.954 3.046 27 H -0.292 1.292 28 H -0.301 1.301 29 H -0.271 1.271 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.022 0.978 35 H 0.092 0.908 36 H 0.036 0.964 37 H 0.189 0.811 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.024 0.976 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.012 0.988 51 H 0.061 0.939 52 H 0.034 0.966 53 H 0.014 0.986 54 H 0.043 0.957 55 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -1.587 -18.192 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.060 3.940 3 H 0.036 0.964 4 C -0.072 4.072 5 N -0.242 5.242 6 C 0.005 3.995 7 C -0.241 4.241 8 C -0.094 4.094 9 N -0.167 5.167 10 C -0.042 4.042 11 N -0.154 5.154 12 C -0.066 4.066 13 C 0.012 3.988 14 C -0.186 4.186 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.064 4.064 18 C 0.096 3.904 19 H 0.066 0.934 20 C -0.169 4.169 21 N -0.322 5.322 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.572 5.572 26 Si 0.784 3.216 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.196 1.196 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.206 0.794 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.030 0.970 51 H 0.079 0.921 52 H 0.053 0.947 53 H 0.033 0.967 54 H 0.062 0.938 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.638 -0.695 -18.077 20.047 hybrid contribution -1.031 -1.658 1.714 2.598 sum 7.606 -2.353 -16.363 18.198 Atomic orbital electron populations 1.21706 0.94848 1.01060 1.01033 1.20664 0.93316 0.93518 0.86537 0.96419 1.22545 0.87129 0.98776 0.98724 1.61960 1.10049 1.50016 1.02163 1.20384 0.89379 0.97441 0.92252 1.19877 0.96120 0.94005 1.14084 1.22677 0.85050 1.00407 1.01218 1.48615 1.06992 1.08796 1.52342 1.22076 0.80102 0.99038 1.02987 1.77193 1.17785 0.96443 1.23970 1.22319 0.90223 0.96306 0.97715 1.19045 0.94524 0.88637 0.96568 1.21723 0.98076 0.97871 1.00892 1.21840 0.99940 1.02807 0.94177 1.21974 0.99157 1.01665 0.95996 1.22406 0.98561 0.93363 0.92104 1.20148 0.82963 0.94250 0.93003 0.93429 1.21698 0.95985 0.99549 0.99667 1.44459 1.03427 1.65655 1.18635 1.19451 0.94238 1.37363 0.86521 0.91202 1.25697 0.98637 1.01401 0.98699 1.70173 1.21830 1.47961 1.17220 0.85460 0.79116 0.77986 0.79012 1.21916 1.22859 1.19630 0.93505 0.94245 0.90524 0.88919 0.95989 0.88950 0.94559 0.79394 0.90761 0.86936 0.89067 0.92917 0.90958 0.94570 0.91678 0.90470 0.93135 0.95681 0.92349 0.89372 0.97021 0.92067 0.94701 0.96687 0.93837 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.95 71.98 0.57 -3.94 16 2 C 0.17 6.52 3.26 44.96 0.15 6.67 16 3 H 0.02 0.77 7.63 -2.39 -0.02 0.75 16 4 C 0.06 1.82 4.29 86.38 0.37 2.19 16 5 N -0.52 -16.53 2.12 -899.81 -1.91 -18.43 16 6 C 0.13 3.48 4.29 85.56 0.37 3.84 16 7 C -0.23 -6.26 4.77 -20.14 -0.10 -6.36 16 8 C 0.05 1.32 10.55 83.54 0.88 2.21 16 9 N -0.39 -9.70 4.01 -369.55 -1.48 -11.19 16 10 C 0.10 1.53 11.47 127.77 1.47 2.99 16 11 N -0.33 -10.03 11.87 -47.38 -0.56 -10.60 16 12 C 0.10 2.90 5.60 43.10 0.24 3.14 16 13 C 0.01 0.36 0.81 -52.93 -0.04 0.32 16 14 C -0.13 -3.08 7.96 71.98 0.57 -2.50 16 15 C -0.13 -2.55 8.35 71.98 0.60 -1.95 16 16 C -0.13 -3.61 7.79 71.98 0.56 -3.05 16 17 C 0.07 2.48 4.85 86.38 0.42 2.90 16 18 C 0.20 9.62 2.34 44.96 0.11 9.73 16 19 H 0.05 2.65 6.23 -2.39 -0.01 2.63 16 20 C -0.11 -5.26 8.95 71.98 0.64 -4.61 16 21 N -0.60 -28.83 2.72 -650.63 -1.77 -30.60 16 22 C -0.25 -13.02 8.66 84.03 0.73 -12.30 16 23 H 0.07 3.62 6.24 -2.91 -0.02 3.60 16 24 C -0.05 -2.71 5.00 84.86 0.42 -2.28 16 25 N -0.93 -53.99 9.66 21.65 0.21 -53.78 16 26 Si 0.95 45.09 29.57 68.60 2.03 47.12 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 30 H 0.05 1.67 7.52 -2.39 -0.02 1.65 16 31 H 0.04 1.54 7.61 -2.39 -0.02 1.52 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.37 7.61 -2.38 -0.02 2.35 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 2.11 5.18 -2.39 -0.01 2.10 16 36 H 0.04 0.91 8.06 -2.38 -0.02 0.89 16 37 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.22 5.73 -2.39 -0.01 1.21 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.02 0.84 7.19 -2.38 -0.02 0.82 16 48 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 49 H 0.09 2.49 3.87 -2.39 -0.01 2.48 16 50 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.06 2.27 6.62 -2.39 -0.02 2.26 16 52 H 0.03 1.90 6.79 -2.39 -0.02 1.88 16 53 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 54 H 0.04 1.98 6.14 -2.39 -0.01 1.96 16 55 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -66.84 402.76 5.32 -61.52 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.85 Total: 18.96 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 7.96 Total: -3.00 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.52 Total: -124.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.84 5.32 -61.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567637.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.301 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds