Wall clock time and date at job start Tue Mar 31 2020 18:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 N 1.46497 * 109.47318 * 180.02562 * 3 2 1 5 5 N 1.40090 * 126.03240 * 270.02688 * 4 3 2 6 6 C 1.30841 * 108.20063 * 179.69516 * 5 4 3 7 7 C 1.50709 * 125.89363 * 180.25650 * 6 5 4 8 8 C 1.39868 * 108.20392 * 0.43666 * 6 5 4 9 9 C 1.50704 * 126.03779 * 179.81789 * 8 6 5 10 10 N 1.46894 * 109.47160 * 269.69255 * 9 8 6 11 11 C 1.46898 * 111.00041 * 45.69838 * 10 9 8 12 12 C 1.52789 * 109.41936 * 187.11714 * 11 10 9 13 13 H 1.08993 * 109.46303 * 66.18200 * 12 11 10 14 14 C 1.52999 * 109.55399 * 186.61127 * 12 11 10 15 15 N 1.47085 * 108.76646 * 306.42172 * 12 11 10 16 16 C 1.36933 * 120.88120 * 231.12691 * 15 12 11 17 17 H 1.08001 * 119.99502 * 128.20493 * 16 15 12 18 18 C 1.38808 * 120.00343 * 308.20438 * 16 15 12 19 19 N 1.31620 * 119.99747 * 338.25040 * 18 16 15 20 20 Si 1.86795 * 120.00346 * 158.24906 * 18 16 15 21 21 H 1.48499 * 109.47312 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46977 * 299.99798 * 20 18 16 23 23 H 1.48496 * 109.47349 * 59.99661 * 20 18 16 24 24 C 1.47077 * 118.23206 * 50.85331 * 15 12 11 25 25 H 1.09002 * 109.62822 * 68.99660 * 24 15 12 26 26 C 1.53000 * 109.62600 * 189.37918 * 24 15 12 27 27 C 1.46894 * 111.00235 * 170.00246 * 10 9 8 28 28 C 1.34941 * 126.04251 * 89.99585 * 4 3 2 29 29 C 1.50701 * 126.12597 * 0.04180 * 28 4 3 30 30 H 1.09003 * 109.47182 * 59.99926 * 1 2 3 31 31 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46952 * 299.99779 * 1 2 3 33 33 H 1.09000 * 109.46718 * 239.99882 * 2 1 3 34 34 H 1.08995 * 109.46954 * 119.99860 * 2 1 3 35 35 H 1.09002 * 109.47544 * 59.99775 * 3 2 1 36 36 H 1.09003 * 109.47109 * 300.00118 * 3 2 1 37 37 H 1.09002 * 109.46956 * 270.20937 * 7 6 5 38 38 H 1.08988 * 109.47103 * 30.21207 * 7 6 5 39 39 H 1.09007 * 109.46690 * 150.21342 * 7 6 5 40 40 H 1.09003 * 109.46536 * 149.68714 * 9 8 6 41 41 H 1.09004 * 109.46906 * 29.69281 * 9 8 6 42 42 H 1.08997 * 109.49579 * 307.21290 * 11 10 9 43 43 H 1.08997 * 109.49514 * 67.29972 * 11 10 9 44 44 H 1.08997 * 109.47157 * 187.42912 * 14 12 11 45 45 H 1.09000 * 109.47503 * 307.43266 * 14 12 11 46 46 H 1.09003 * 109.47319 * 67.43102 * 14 12 11 47 47 H 0.96995 * 120.00053 * 175.07686 * 19 18 16 48 48 H 1.09004 * 109.47199 * 60.00106 * 26 24 15 49 49 H 1.09005 * 109.47212 * 180.02562 * 26 24 15 50 50 H 1.09001 * 109.47144 * 300.00442 * 26 24 15 51 51 H 1.09002 * 109.49105 * 52.78231 * 27 10 9 52 52 H 1.08998 * 109.49509 * 292.70591 * 27 10 9 53 53 H 1.08998 * 109.47688 * 269.97870 * 29 28 4 54 54 H 1.08998 * 109.46954 * 29.98278 * 29 28 4 55 55 H 1.09000 * 109.47250 * 149.97390 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3295 1.4418 1.1319 6 6 5.5749 1.4355 0.7307 7 6 6.7903 1.4270 1.6219 8 6 5.5835 1.4420 -0.6679 9 6 6.8075 1.4420 -1.5471 10 7 7.2056 2.8269 -1.8322 11 6 7.1875 3.6421 -0.6103 12 6 7.4325 5.1060 -0.9726 13 1 6.5940 5.4800 -1.5600 14 6 7.5784 5.9326 0.3065 15 7 8.6694 5.1971 -1.7634 16 6 9.6582 6.0809 -1.4224 17 1 10.6754 5.7359 -1.3100 18 6 9.3531 7.4200 -1.2210 19 7 8.2629 7.9333 -1.7504 20 14 10.4898 8.4934 -0.1988 21 1 9.9435 9.8728 -0.1353 22 1 10.5921 7.9384 1.1748 23 1 11.8371 8.5223 -0.8226 24 6 8.8184 4.3095 -2.9267 25 1 8.1180 4.6076 -3.7069 26 6 10.2497 4.3973 -3.4601 27 6 8.5212 2.8729 -2.4840 28 6 4.2985 1.4426 -1.0921 29 6 3.8364 1.4436 -2.5265 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 7.0868 2.4527 1.8416 38 1 6.5552 0.9097 2.5519 39 1 7.6078 0.9127 1.1165 40 1 6.5831 0.9284 -2.4820 41 1 7.6216 0.9277 -1.0363 42 1 6.2179 3.5443 -0.1221 43 1 7.9716 3.3015 0.0658 44 1 7.6209 6.9916 0.0519 45 1 6.7232 5.7494 0.9571 46 1 8.4950 5.6458 0.8220 47 1 8.0120 8.8489 -1.5516 48 1 10.9475 4.0921 -2.6802 49 1 10.3572 3.7390 -4.3222 50 1 10.4641 5.4236 -3.7580 51 1 8.5188 2.2171 -3.3547 52 1 9.2868 2.5429 -1.7818 53 1 3.7248 0.4162 -2.8730 54 1 2.8781 1.9577 -2.5991 55 1 4.5722 1.9577 -3.1449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334383310.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:41 Heat of formation + Delta-G solvation = 77.286546 kcal Electronic energy + Delta-G solvation = -31186.950632 eV Core-core repulsion = 27453.233145 eV Total energy + Delta-G solvation = -3733.717487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.43736 -39.92789 -37.01367 -36.15728 -34.51140 -33.91157 -33.36169 -32.35718 -29.89886 -29.59587 -28.74823 -27.42867 -27.01359 -26.37580 -25.26887 -23.06429 -22.53210 -21.95963 -20.83638 -20.44867 -20.10066 -18.07987 -17.48893 -17.14200 -16.55200 -16.27598 -16.08699 -15.90835 -15.82460 -15.29427 -14.94934 -14.75271 -14.70812 -14.32928 -14.25459 -14.08259 -13.83372 -13.51644 -13.34647 -13.28770 -13.22477 -13.20766 -12.97095 -12.83951 -12.83493 -12.66207 -12.53480 -12.52019 -12.33438 -12.29977 -12.16332 -12.05069 -11.90191 -11.75318 -11.52834 -11.47323 -11.29891 -11.09162 -10.08300 -9.93668 -9.34413 -8.91915 -8.35528 -7.64295 -5.51943 0.94105 1.44737 1.47854 1.53027 1.61381 1.73426 2.51848 3.26482 3.29222 3.52432 3.64433 3.77564 3.89418 3.95707 4.11988 4.25549 4.29332 4.32007 4.35986 4.42907 4.47249 4.51143 4.58225 4.64154 4.67503 4.70437 4.72730 4.75839 4.78829 4.81719 4.88256 4.91046 4.94082 4.96204 5.00776 5.02346 5.05343 5.06994 5.09789 5.14662 5.23571 5.31981 5.35212 5.38836 5.53395 5.59374 5.71583 5.75980 5.77975 5.82596 6.22480 6.35423 6.43893 6.60285 6.82682 7.28560 7.88198 8.61620 9.18097 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.003199 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.722617 B = 8750.189656 C = 9224.571449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.125 3.875 4 N -0.375 5.375 5 N -0.334 5.334 6 C 0.073 3.927 7 C -0.072 4.072 8 C -0.252 4.252 9 C 0.141 3.859 10 N -0.538 5.538 11 C 0.076 3.924 12 C 0.200 3.800 13 H -0.010 1.010 14 C -0.132 4.132 15 N -0.593 5.593 16 C -0.259 4.259 17 H 0.047 0.953 18 C -0.004 4.004 19 N -0.907 5.907 20 Si 0.930 3.070 21 H -0.295 1.295 22 H -0.276 1.276 23 H -0.273 1.273 24 C 0.164 3.836 25 H 0.006 0.994 26 C -0.119 4.119 27 C 0.061 3.939 28 C 0.103 3.897 29 C -0.088 4.088 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.248 0.752 48 H 0.046 0.954 49 H 0.072 0.928 50 H 0.035 0.965 51 H 0.090 0.910 52 H 0.024 0.976 53 H 0.099 0.901 54 H 0.082 0.918 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 -18.248 0.244 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.005 3.995 4 N -0.157 5.157 5 N -0.157 5.157 6 C -0.093 4.093 7 C -0.131 4.131 8 C -0.263 4.263 9 C 0.014 3.986 10 N -0.262 5.262 11 C -0.053 4.053 12 C 0.093 3.907 13 H 0.008 0.992 14 C -0.190 4.190 15 N -0.318 5.318 16 C -0.389 4.389 17 H 0.064 0.936 18 C -0.203 4.203 19 N -0.549 5.549 20 Si 0.758 3.242 21 H -0.221 1.221 22 H -0.201 1.201 23 H -0.199 1.199 24 C 0.058 3.942 25 H 0.023 0.977 26 C -0.177 4.177 27 C -0.068 4.068 28 C -0.026 4.026 29 C -0.146 4.146 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.055 0.945 51 H 0.108 0.892 52 H 0.042 0.958 53 H 0.117 0.883 54 H 0.100 0.900 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.081 -17.861 0.860 22.155 hybrid contribution 1.495 0.964 0.663 1.898 sum -11.586 -16.897 1.523 20.544 Atomic orbital electron populations 1.21679 0.92637 1.03017 1.02900 1.21823 0.97859 0.94643 1.02419 1.22026 0.72861 0.99447 1.05155 1.48685 1.06869 1.57286 1.02815 1.77194 1.01575 1.27619 1.09264 1.22433 0.93747 0.98822 0.94271 1.20264 0.92032 1.02808 0.97960 1.19674 0.94665 1.18917 0.93030 1.20305 0.92232 0.88631 0.97469 1.61992 1.28307 1.10403 1.25532 1.22311 0.98555 0.93839 0.90611 1.20083 0.87936 0.91848 0.90802 0.99219 1.21822 0.98647 1.02169 0.96340 1.44290 1.17185 1.42427 1.27928 1.18765 0.90241 0.87023 1.42896 0.93595 1.25977 0.97774 0.97593 0.98954 1.70311 1.28320 1.14216 1.42023 0.85964 0.79885 0.78075 0.80314 1.22097 1.20146 1.19857 1.20702 0.95153 0.89447 0.88876 0.97664 1.21584 0.95529 1.00690 0.99866 1.22496 0.88464 0.97582 0.98279 1.21288 0.90433 0.98959 0.91898 1.20547 1.02702 1.04293 0.87047 0.91085 0.91404 0.92201 0.91200 0.92957 0.89217 0.87086 0.91300 0.90233 0.89939 0.89073 0.94549 0.92232 0.96157 0.92222 0.94409 0.93896 0.94237 0.93477 0.90912 0.94536 0.89160 0.95778 0.88286 0.89960 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.13 -1.85 6.26 30.59 0.19 -1.65 16 3 C 0.13 2.23 6.25 86.38 0.54 2.77 16 4 N -0.37 -9.79 3.61 -334.71 -1.21 -11.00 16 5 N -0.33 -10.55 12.58 -47.38 -0.60 -11.15 16 6 C 0.07 2.24 5.85 43.10 0.25 2.49 16 7 C -0.07 -1.92 9.25 71.24 0.66 -1.26 16 8 C -0.25 -7.32 4.18 -20.14 -0.08 -7.40 16 9 C 0.14 3.96 5.18 85.56 0.44 4.41 16 10 N -0.54 -18.84 4.77 -900.77 -4.30 -23.14 16 11 C 0.08 3.04 3.45 86.23 0.30 3.34 16 12 C 0.20 9.69 3.16 44.81 0.14 9.84 16 13 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 14 C -0.13 -6.36 7.93 71.98 0.57 -5.79 16 15 N -0.59 -29.86 2.83 -651.49 -1.85 -31.70 16 16 C -0.26 -13.98 6.79 84.03 0.57 -13.41 16 17 H 0.05 2.50 7.14 -2.91 -0.02 2.48 16 18 C 0.00 -0.22 3.22 84.86 0.27 0.05 16 19 N -0.91 -53.49 11.87 21.65 0.26 -53.24 16 20 Si 0.93 44.09 29.61 68.60 2.03 46.12 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.16 7.06 3.66 44.96 0.16 7.22 16 25 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 26 C -0.12 -4.57 8.17 71.98 0.59 -3.99 16 27 C 0.06 2.12 4.87 86.38 0.42 2.54 16 28 C 0.10 2.65 6.93 41.41 0.29 2.94 16 29 C -0.09 -1.60 9.72 71.24 0.69 -0.91 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 1.50 7.05 -2.39 -0.02 1.48 16 37 H 0.07 1.99 7.19 -2.39 -0.02 1.97 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.99 7.25 -2.38 -0.02 1.98 16 40 H 0.09 2.18 7.77 -2.39 -0.02 2.16 16 41 H 0.04 1.00 7.18 -2.38 -0.02 0.98 16 42 H 0.06 2.42 5.56 -2.39 -0.01 2.40 16 43 H 0.02 0.82 7.12 -2.39 -0.02 0.81 16 44 H 0.06 3.20 4.98 -2.39 -0.01 3.19 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 2.06 7.68 -2.39 -0.02 2.04 16 47 H 0.25 14.28 8.32 -92.71 -0.77 13.50 16 48 H 0.05 1.80 7.60 -2.39 -0.02 1.78 16 49 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 50 H 0.04 1.58 7.65 -2.39 -0.02 1.57 16 51 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 52 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.08 1.23 7.08 -2.39 -0.02 1.22 16 55 H 0.08 1.79 7.78 -2.39 -0.02 1.77 16 Total: -1.00 -68.33 412.66 1.90 -66.43 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.84 Total: 17.16 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 6.72 Total: 0.52 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -7.69 Total: -130.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.33 1.90 -66.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334383310.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.717 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds