Wall clock time and date at job start Tue Mar 31 2020 18:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00716 * 2 1 4 4 N 1.46498 * 109.47403 * 124.99726 * 3 2 1 5 5 C 1.36733 * 127.13833 * 90.02572 * 4 3 2 6 6 C 1.50699 * 126.34767 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46978 * 269.71337 * 6 5 4 8 8 C 1.53001 * 109.47355 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48498 * 109.47200 * 59.99994 * 13 11 9 15 15 H 1.48498 * 109.46671 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47156 * 300.00008 * 13 11 9 17 17 N 1.30292 * 107.30589 * 179.73305 * 5 4 3 18 18 N 1.28524 * 110.05520 * 0.26724 * 17 5 4 19 19 C 1.31221 * 109.85934 * 359.97438 * 18 17 5 20 20 N 1.38583 * 126.47061 * 180.02562 * 19 18 17 21 21 C 1.47849 * 110.99821 * 120.81598 * 20 19 18 22 22 C 1.54900 * 104.79676 * 213.63171 * 21 20 19 23 23 C 1.55147 * 101.65320 * 37.07253 * 22 21 20 24 24 H 1.09004 * 110.85139 * 82.79817 * 23 22 21 25 25 C 1.52994 * 110.70458 * 205.96323 * 23 22 21 26 26 O 1.42907 * 109.47081 * 288.59644 * 25 23 22 27 27 C 1.42905 * 113.99808 * 180.02562 * 26 25 23 28 28 C 1.47442 * 111.00371 * 359.97425 * 20 19 18 29 29 H 1.07998 * 120.00038 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99387 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99840 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46581 * 4.99921 * 3 2 1 33 33 H 1.09005 * 109.47437 * 244.99938 * 3 2 1 34 34 H 1.09000 * 109.47577 * 149.71338 * 6 5 4 35 35 H 1.09002 * 109.47066 * 29.70828 * 6 5 4 36 36 H 1.09000 * 109.46966 * 59.99627 * 7 6 5 37 37 H 1.09002 * 109.46807 * 299.99649 * 7 6 5 38 38 H 1.08998 * 109.46837 * 59.99832 * 8 7 6 39 39 H 1.09002 * 109.46926 * 299.99636 * 8 7 6 40 40 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 41 41 H 1.08999 * 110.37575 * 332.46982 * 21 20 19 42 42 H 1.09000 * 110.37075 * 94.80601 * 21 20 19 43 43 H 1.08999 * 110.99426 * 278.98103 * 22 21 20 44 44 H 1.09001 * 110.99109 * 155.16105 * 22 21 20 45 45 H 1.08992 * 109.47672 * 48.59674 * 25 23 22 46 46 H 1.08997 * 109.46888 * 168.60170 * 25 23 22 47 47 H 1.09001 * 109.46958 * 60.00238 * 27 26 25 48 48 H 1.09004 * 109.46724 * 180.02562 * 27 26 25 49 49 H 1.08992 * 109.46973 * 300.00398 * 27 26 25 50 50 H 1.08998 * 109.88744 * 242.66519 * 28 20 19 51 51 H 1.09005 * 109.88684 * 3.85070 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.2914 0.9007 1.1437 6 6 5.0447 0.3021 -0.0161 7 6 4.8646 -1.2173 -0.0115 8 6 5.6288 -1.8251 -1.1894 9 6 5.4519 -3.3216 -1.1844 10 1 4.8545 -3.7923 -0.4176 11 6 6.0528 -4.0901 -2.1589 12 7 6.7807 -3.5171 -3.0924 13 14 5.8398 -5.9459 -2.1483 14 1 4.3976 -6.2794 -2.2669 15 1 6.5795 -6.5355 -3.2930 16 1 6.3724 -6.4981 -0.8768 17 7 4.7578 1.1093 2.3423 18 7 3.8485 1.6336 3.0840 19 6 2.7442 1.7894 2.3925 20 7 1.5515 2.3232 2.8541 21 6 1.1629 3.5121 2.0659 22 6 0.4558 4.4453 3.0801 23 6 1.2992 4.2122 4.3613 24 1 2.1987 4.8277 4.3509 25 6 0.4680 4.4934 5.6146 26 8 0.2465 5.9002 5.7335 27 6 -0.5238 6.2725 6.8782 28 6 1.6614 2.7149 4.2713 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6215 1.4025 -0.9314 34 1 6.1039 0.5426 0.0754 35 1 4.6586 0.7108 -0.9499 36 1 3.8054 -1.4579 -0.1030 37 1 5.2507 -1.6260 0.9223 38 1 6.6880 -1.5845 -1.0982 39 1 5.2424 -1.4163 -2.1230 40 1 7.2030 -4.0577 -3.7781 41 1 2.0465 3.9996 1.6537 42 1 0.4768 3.2303 1.2673 43 1 -0.5798 4.1418 3.2338 44 1 0.5126 5.4854 2.7591 45 1 -0.4904 3.9800 5.5379 46 1 1.0032 4.1344 6.4936 47 1 -0.0088 5.9504 7.7832 48 1 -0.6478 7.3554 6.8961 49 1 -1.5027 5.7959 6.8280 50 1 0.9669 2.1286 4.8730 51 1 2.6818 2.5585 4.6212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340660226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:57 Heat of formation + Delta-G solvation = 53.358922 kcal Electronic energy + Delta-G solvation = -28977.775458 eV Core-core repulsion = 25107.187298 eV Total energy + Delta-G solvation = -3870.588161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.90301 -39.70876 -37.92960 -36.30720 -34.85689 -33.30428 -32.80867 -32.04463 -30.35890 -29.20738 -27.46575 -26.89728 -26.71298 -25.17131 -23.74125 -22.67904 -21.40406 -20.93604 -20.55787 -20.35336 -19.55009 -17.75741 -16.92960 -16.46467 -16.34187 -16.20775 -16.16684 -15.77558 -15.07599 -14.79653 -14.51412 -14.31019 -13.98408 -13.94501 -13.72652 -13.52050 -13.18727 -12.90440 -12.57333 -12.33845 -12.30736 -11.97356 -11.95397 -11.69357 -11.66469 -11.48058 -11.30142 -11.14478 -10.97103 -10.83938 -10.80881 -10.57345 -10.41426 -10.08770 -10.06212 -9.78022 -9.69039 -9.65022 -9.38902 -9.12993 -8.35204 -8.12671 -6.00713 -4.02849 1.77491 1.93925 2.52365 3.02372 3.25868 3.33405 3.37802 3.40765 3.58371 4.08550 4.16357 4.44009 4.45374 4.53127 4.62590 4.67845 4.79096 4.80206 4.89697 4.91162 4.95020 4.98341 5.11448 5.13786 5.18585 5.23937 5.25447 5.29185 5.35357 5.42815 5.49760 5.55539 5.60096 5.73613 5.86076 5.87909 5.99654 6.03613 6.10201 6.36976 6.40802 6.50092 6.63313 6.66822 6.71620 6.78442 7.05056 7.21083 7.64804 7.78356 7.98512 8.41113 8.96896 9.03361 9.61169 11.10441 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.002133 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.928878 B =13125.760230 C =13503.872948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.174 4.174 3 C 0.137 3.863 4 N -0.474 5.474 5 C 0.203 3.797 6 C -0.035 4.035 7 C -0.102 4.102 8 C 0.023 3.977 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.288 5.288 18 N -0.326 5.326 19 C 0.342 3.658 20 N -0.438 5.438 21 C 0.038 3.962 22 C -0.115 4.115 23 C -0.107 4.107 24 H 0.090 0.910 25 C 0.073 3.927 26 O -0.391 6.391 27 C 0.032 3.968 28 C 0.054 3.946 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.181 19.775 12.682 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 C 0.014 3.986 4 N -0.169 5.169 5 C -0.065 4.065 6 C -0.075 4.075 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.126 5.126 18 N -0.170 5.170 19 C -0.014 4.014 20 N -0.162 5.162 21 C -0.089 4.089 22 C -0.153 4.153 23 C -0.127 4.127 24 H 0.108 0.892 25 C -0.004 4.004 26 O -0.310 6.310 27 C -0.065 4.065 28 C -0.073 4.073 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.405 19.537 13.505 29.445 hybrid contribution -0.718 -0.874 -0.877 1.431 sum -18.123 18.663 12.628 28.917 Atomic orbital electron populations 1.23842 0.95411 1.02180 0.98429 1.23173 0.96399 0.98270 1.01471 1.21036 0.91805 0.97654 0.88080 1.46192 1.12227 1.48256 1.10232 1.25265 0.81977 1.00958 0.98257 1.20348 0.99261 0.97645 0.90229 1.21680 1.00635 0.89872 1.01924 1.19093 0.95388 0.95215 0.91684 1.21178 1.31053 0.92152 1.11509 0.92810 1.25005 0.95214 0.98556 0.95567 1.69948 1.32926 1.35559 1.14970 0.86671 0.78165 0.85708 0.77543 1.20326 1.21274 1.20204 1.73996 1.22618 1.16079 0.99918 1.74399 0.96190 1.20578 1.25840 1.22583 0.92607 1.02732 0.83515 1.60302 1.22310 1.28811 1.04763 1.23272 0.99903 0.88619 0.97070 1.22726 0.99392 0.99662 0.93490 1.22365 0.99307 0.96594 0.94401 0.89157 1.22469 0.98644 0.82016 0.97225 1.87873 1.73850 1.23249 1.46009 1.22743 0.94483 1.01216 0.88051 1.22848 1.04697 0.93510 0.86243 0.87687 0.88529 0.85805 0.88679 0.87631 0.88503 0.90525 0.93494 0.92480 0.96184 0.96509 0.92949 0.92484 0.89284 0.90053 0.89713 0.92732 0.92757 0.93987 0.89615 0.94044 0.89309 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 14.32 29.02 0.42 -1.14 16 2 C -0.17 -2.06 9.85 -36.03 -0.35 -2.42 16 3 C 0.14 1.51 6.34 -5.20 -0.03 1.48 16 4 N -0.47 -6.85 2.79 -115.37 -0.32 -7.17 16 5 C 0.20 3.47 7.32 -154.02 -1.13 2.34 16 6 C -0.04 -0.59 5.59 -27.88 -0.16 -0.75 16 7 C -0.10 -2.08 5.13 -26.73 -0.14 -2.22 16 8 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 9 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.29 -5.56 12.18 32.99 0.40 -5.15 16 18 N -0.33 -5.80 10.47 30.32 0.32 -5.49 16 19 C 0.34 5.09 6.98 -318.86 -2.23 2.86 16 20 N -0.44 -5.02 5.22 -171.31 -0.89 -5.92 16 21 C 0.04 0.33 5.50 -2.30 -0.01 0.32 16 22 C -0.11 -0.82 6.47 -24.59 -0.16 -0.98 16 23 C -0.11 -0.88 3.21 -88.80 -0.28 -1.16 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 25 C 0.07 0.52 5.23 37.15 0.19 0.72 16 26 O -0.39 -3.25 10.64 -35.23 -0.37 -3.62 16 27 C 0.03 0.17 11.01 101.05 1.11 1.28 16 28 C 0.05 0.55 6.42 -2.84 -0.02 0.53 16 29 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.10 0.74 7.84 -52.48 -0.41 0.33 16 31 H 0.12 1.76 6.65 -52.48 -0.35 1.41 16 32 H 0.10 0.82 5.07 -51.93 -0.26 0.56 16 33 H 0.11 1.07 7.25 -51.93 -0.38 0.70 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 1.14 7.26 -51.93 -0.38 0.76 16 36 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 42 H 0.09 0.64 6.68 -51.93 -0.35 0.29 16 43 H 0.08 0.53 7.94 -51.93 -0.41 0.11 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 48 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.09 0.79 7.82 -51.93 -0.41 0.39 16 51 H 0.10 1.22 6.32 -51.93 -0.33 0.89 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -33.61 409.23 -10.96 -44.57 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -8.63 Total: -2.14 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -3.34 Total: -12.07 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.24 Total: -49.55 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.37 Total: -3.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.61 -10.96 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340660226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.931 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds