Wall clock time and date at job start Tue Mar 31 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00030 * 2 1 4 4 N 1.46497 * 109.46924 * 122.77756 * 3 2 1 5 5 C 1.36737 * 127.13924 * 90.19753 * 4 3 2 6 6 C 1.50699 * 126.34488 * 359.93721 * 5 4 3 7 7 C 1.52998 * 109.46934 * 90.00316 * 6 5 4 8 8 C 1.52998 * 109.47395 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47477 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00480 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00371 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99630 * 359.97438 * 11 9 8 14 14 H 1.48492 * 109.47455 * 90.00094 * 13 11 9 15 15 H 1.48501 * 109.47013 * 210.00362 * 13 11 9 16 16 H 1.48503 * 109.47172 * 329.99913 * 13 11 9 17 17 N 1.30288 * 107.30649 * 179.97438 * 5 4 3 18 18 N 1.28523 * 110.05731 * 359.97438 * 17 5 4 19 19 C 1.31211 * 109.85968 * 359.74729 * 18 17 5 20 20 N 1.38584 * 126.47856 * 180.25800 * 19 18 17 21 21 C 1.46849 * 110.99955 * 271.89240 * 20 19 18 22 22 C 1.53035 * 109.52046 * 185.83773 * 21 20 19 23 23 C 1.53117 * 109.28037 * 300.81402 * 22 21 20 24 24 C 1.53121 * 109.15896 * 57.65801 * 23 22 21 25 25 H 1.08997 * 109.50454 * 62.28340 * 24 23 22 26 26 O 1.42900 * 109.50507 * 182.40434 * 24 23 22 27 27 C 1.42895 * 114.00126 * 269.80448 * 26 24 23 28 28 C 1.46848 * 110.99827 * 36.09726 * 20 19 18 29 29 H 1.08005 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00200 * 179.72264 * 1 2 3 31 31 H 1.07996 * 119.99888 * 180.02562 * 2 1 3 32 32 H 1.08991 * 109.47366 * 242.77815 * 3 2 1 33 33 H 1.09005 * 109.47198 * 2.78068 * 3 2 1 34 34 H 1.09002 * 109.47457 * 210.00159 * 6 5 4 35 35 H 1.09006 * 109.47138 * 330.00665 * 6 5 4 36 36 H 1.09001 * 109.47443 * 300.00129 * 7 6 5 37 37 H 1.08996 * 109.47339 * 59.99937 * 7 6 5 38 38 H 1.09002 * 109.47235 * 299.99989 * 8 7 6 39 39 H 1.09004 * 109.47159 * 59.99738 * 8 7 6 40 40 H 0.97004 * 119.99996 * 179.97438 * 12 11 9 41 41 H 1.09005 * 109.45995 * 305.85124 * 21 20 19 42 42 H 1.08995 * 109.46367 * 65.81948 * 21 20 19 43 43 H 1.09009 * 109.50153 * 180.87868 * 22 21 20 44 44 H 1.08996 * 109.54007 * 60.77957 * 22 21 20 45 45 H 1.09003 * 109.52453 * 297.75994 * 23 22 21 46 46 H 1.08996 * 109.52624 * 177.56498 * 23 22 21 47 47 H 1.09004 * 109.46929 * 299.99805 * 27 26 24 48 48 H 1.08998 * 109.47221 * 59.99538 * 27 26 24 49 49 H 1.09002 * 109.47387 * 179.97438 * 27 26 24 50 50 H 1.08996 * 109.46120 * 294.17890 * 28 20 19 51 51 H 1.08999 * 109.46094 * 54.15800 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9552 1.3541 1.1613 5 6 4.2526 0.9269 1.2245 6 6 5.0450 0.3085 0.1017 7 6 5.7641 1.4088 -0.6812 8 6 6.5691 0.7810 -1.8208 9 6 7.2779 1.8647 -2.5916 10 1 7.1658 2.8979 -2.2978 11 6 8.0696 1.5373 -3.6719 12 7 8.6877 2.4831 -4.3449 13 14 8.2641 -0.2499 -4.1797 14 1 7.2083 -0.6031 -5.1623 15 1 9.6004 -0.4464 -4.7969 16 1 8.1384 -1.1208 -2.9835 17 7 4.6765 1.1528 2.4357 18 7 3.7426 1.6900 3.1364 19 6 2.6657 1.8419 2.4024 20 7 1.4605 2.3904 2.8113 21 6 0.5844 1.3638 3.3901 22 6 -0.7856 1.9736 3.6954 23 6 -0.6141 3.1367 4.6762 24 6 0.3407 4.1689 4.0698 25 1 -0.0910 4.5691 3.1525 26 8 0.5501 5.2311 5.0025 27 6 -0.3790 6.3091 4.8739 28 6 1.6781 3.4955 3.7536 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 2.6523 1.3848 -0.9138 33 1 1.3562 2.1331 0.0499 34 1 5.7795 -0.3837 0.5135 35 1 4.3713 -0.2305 -0.5645 36 1 5.0297 2.1010 -1.0931 37 1 6.4377 1.9478 -0.0151 38 1 7.3037 0.0891 -1.4086 39 1 5.8959 0.2416 -2.4871 40 1 9.2450 2.2526 -5.1047 41 1 0.4674 0.5443 2.6809 42 1 1.0273 0.9859 4.3116 43 1 -1.4307 1.2153 4.1394 44 1 -1.2357 2.3392 2.7725 45 1 -0.2006 2.7648 5.6137 46 1 -1.5821 3.6016 4.8630 47 1 -0.3015 6.7383 3.8749 48 1 -1.3913 5.9371 5.0319 49 1 -0.1532 7.0740 5.6169 50 1 2.1158 3.1076 4.6733 51 1 2.3552 4.2244 3.3083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342334532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:17 Heat of formation + Delta-G solvation = 29.964819 kcal Electronic energy + Delta-G solvation = -29407.082899 eV Core-core repulsion = 25535.480293 eV Total energy + Delta-G solvation = -3871.602605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.11877 -40.57372 -38.27602 -37.33093 -36.54037 -34.67705 -34.17529 -33.53550 -31.53139 -31.25913 -28.89517 -27.80534 -27.43040 -25.74303 -25.40079 -23.90540 -22.52659 -22.29747 -21.75667 -20.86285 -20.81893 -18.96362 -18.67617 -17.64116 -17.42353 -17.03055 -16.52900 -16.31691 -16.13471 -16.08630 -15.78674 -15.58629 -15.37073 -15.07126 -14.79618 -14.56923 -14.33737 -14.12073 -13.90884 -13.73923 -13.45646 -13.37753 -12.86605 -12.84349 -12.67282 -12.58136 -12.49563 -12.18779 -12.06043 -11.91557 -11.85660 -11.79231 -11.66728 -11.59152 -11.44213 -11.34615 -11.11318 -10.74099 -10.55243 -10.51117 -10.44247 -9.67880 -8.27113 -6.32174 0.62778 0.86341 1.39057 1.42822 1.49091 1.54535 1.69263 2.37361 2.39395 3.03396 3.08666 3.33694 3.55754 3.62462 3.70453 3.82239 3.87328 3.94560 4.01508 4.13650 4.18291 4.23673 4.25107 4.34828 4.40353 4.49530 4.50562 4.56258 4.58609 4.60227 4.72906 4.73993 4.78638 4.86754 4.91243 4.92762 4.96985 5.01839 5.03515 5.04677 5.09068 5.29641 5.43020 5.50232 5.54319 5.58155 5.61016 5.67700 5.69042 6.11484 6.23345 6.29837 6.76131 7.32367 7.63496 8.90146 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.002498 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.501857 B =11207.028599 C =11913.419683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.201 4.201 3 C 0.131 3.869 4 N -0.456 5.456 5 C 0.199 3.801 6 C -0.025 4.025 7 C -0.083 4.083 8 C -0.008 4.008 9 C -0.535 4.535 10 H 0.023 0.977 11 C 0.000 4.000 12 N -0.956 5.956 13 Si 0.955 3.045 14 H -0.261 1.261 15 H -0.289 1.289 16 H -0.240 1.240 17 N -0.328 5.328 18 N -0.353 5.353 19 C 0.347 3.653 20 N -0.442 5.442 21 C 0.057 3.943 22 C -0.101 4.101 23 C -0.140 4.140 24 C 0.100 3.900 25 H 0.083 0.917 26 O -0.410 6.410 27 C 0.027 3.973 28 C 0.076 3.924 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.044 0.956 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.841 -3.545 14.899 33.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.220 4.220 3 C 0.010 3.990 4 N -0.149 5.149 5 C -0.070 4.070 6 C -0.065 4.065 7 C -0.122 4.122 8 C -0.045 4.045 9 C -0.573 4.573 10 H 0.042 0.958 11 C -0.196 4.196 12 N -0.597 5.597 13 Si 0.778 3.222 14 H -0.186 1.186 15 H -0.215 1.215 16 H -0.163 1.163 17 N -0.168 5.168 18 N -0.196 5.196 19 C -0.010 4.010 20 N -0.169 5.169 21 C -0.069 4.069 22 C -0.139 4.139 23 C -0.177 4.177 24 C 0.042 3.958 25 H 0.101 0.899 26 O -0.329 6.329 27 C -0.069 4.069 28 C -0.052 4.052 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.062 0.938 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.939 -3.254 15.700 33.084 hybrid contribution 0.453 -0.207 -0.999 1.116 sum -28.487 -3.461 14.700 32.242 Atomic orbital electron populations 1.24207 0.94699 1.03918 0.94355 1.22970 0.97044 0.96809 1.05132 1.21283 0.92853 0.99166 0.85714 1.46472 1.11477 1.45883 1.11024 1.25210 0.83193 1.01392 0.97200 1.20224 0.97754 0.97591 0.90904 1.21230 0.97908 0.96774 0.96309 1.19513 0.95485 0.95549 0.93992 1.21491 1.28648 0.93927 1.13189 0.95822 1.26110 0.94616 1.02879 0.96037 1.70091 1.32833 1.35505 1.21221 0.85586 0.77662 0.79285 0.79695 1.18554 1.21517 1.16304 1.73945 1.23274 1.16978 1.02589 1.74480 0.99177 1.19461 1.26524 1.22465 0.94122 1.00378 0.84037 1.58617 1.06548 1.10116 1.41627 1.22418 0.93381 0.92881 0.98220 1.21547 0.94006 0.97818 1.00502 1.22103 1.00207 0.96216 0.99210 1.22004 0.93273 0.87960 0.92595 0.89938 1.87859 1.56607 1.30998 1.57400 1.22989 0.92822 0.88844 1.02270 1.21879 0.97971 0.91428 0.93882 0.86615 0.86105 0.87071 0.87487 0.86560 0.87967 0.87233 0.93219 0.94485 0.95635 0.94731 0.92550 0.89415 0.94787 0.87983 0.89187 0.92027 0.89134 0.93358 0.92248 0.88759 0.93787 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 13.78 67.78 0.93 -0.32 16 2 C -0.20 -2.92 9.70 25.65 0.25 -2.67 16 3 C 0.13 2.47 6.33 85.63 0.54 3.01 16 4 N -0.46 -12.33 2.79 -518.92 -1.45 -13.78 16 5 C 0.20 6.48 7.32 137.64 1.01 7.48 16 6 C -0.03 -0.76 5.42 29.85 0.16 -0.60 16 7 C -0.08 -3.24 5.13 30.59 0.16 -3.08 16 8 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 9 C -0.53 -30.99 9.66 25.60 0.25 -30.74 16 10 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 11 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 12 N -0.96 -60.67 13.96 21.45 0.30 -60.37 16 13 Si 0.96 43.37 27.47 68.60 1.88 45.25 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 16 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 17 N -0.33 -12.73 12.18 -49.54 -0.60 -13.33 16 18 N -0.35 -12.95 11.69 -58.00 -0.68 -13.63 16 19 C 0.35 10.10 6.71 260.11 1.75 11.85 16 20 N -0.44 -9.57 4.67 -706.15 -3.30 -12.87 16 21 C 0.06 0.93 5.40 86.32 0.47 1.40 16 22 C -0.10 -0.92 6.09 30.64 0.19 -0.74 16 23 C -0.14 -1.62 5.62 30.67 0.17 -1.45 16 24 C 0.10 1.64 2.77 30.65 0.08 1.73 16 25 H 0.08 1.16 7.79 -2.39 -0.02 1.14 16 26 O -0.41 -7.83 10.35 -148.98 -1.54 -9.38 16 27 C 0.03 0.31 10.82 113.37 1.23 1.53 16 28 C 0.08 1.77 4.74 86.33 0.41 2.18 16 29 H 0.12 0.80 7.84 -2.91 -0.02 0.78 16 30 H 0.12 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.11 2.08 7.87 -2.39 -0.02 2.06 16 33 H 0.12 1.87 7.79 -2.38 -0.02 1.85 16 34 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.11 2.61 7.92 -2.38 -0.02 2.59 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.12 7.20 -2.39 -0.02 1.11 16 39 H 0.03 1.41 7.57 -2.38 -0.02 1.40 16 40 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.09 1.32 7.40 -2.38 -0.02 1.30 16 42 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 0.72 7.95 -2.39 -0.02 0.70 16 47 H 0.05 0.50 8.09 -2.39 -0.02 0.48 16 48 H 0.06 0.46 7.95 -2.39 -0.02 0.44 16 49 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 50 H 0.04 1.20 8.06 -2.39 -0.02 1.18 16 51 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -78.33 411.95 3.61 -74.72 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.82 Total: 13.59 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 8.17 Total: -10.21 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -5.73 Total: -113.98 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -1.54 Total: -9.38 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -78.33 3.61 -74.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342334532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.686 kcal (2) G-P(sol) polarization free energy of solvation -78.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds