Wall clock time and date at job start Tue Mar 31 2020 19:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86798 * 120.00265 * 2 1 4 4 H 1.48504 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47478 * 300.00389 * 3 2 1 6 6 H 1.48502 * 109.47109 * 60.00579 * 3 2 1 7 7 C 1.40230 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00217 * 197.87426 * 7 2 1 9 9 C 1.41095 * 119.99537 * 17.87757 * 7 2 1 10 10 C 1.40904 * 120.09676 * 204.63308 * 9 7 2 11 11 C 1.36305 * 119.89064 * 180.02562 * 10 9 7 12 12 C 1.40035 * 120.10258 * 359.97438 * 11 10 9 13 13 C 1.47604 * 119.89193 * 179.97438 * 12 11 10 14 14 O 1.21628 * 120.00221 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99688 * 179.72707 * 13 12 11 16 16 C 1.40670 * 119.99593 * 179.97438 * 15 13 12 17 17 C 1.35787 * 126.09241 * 359.71134 * 16 15 13 18 18 N 1.35824 * 107.56918 * 179.87635 * 17 16 15 19 19 H 0.96999 * 126.04318 * 180.12873 * 18 17 16 20 20 N 1.40073 * 107.91212 * 0.38650 * 18 17 16 21 21 C 1.30863 * 108.37867 * 359.75989 * 20 18 17 22 22 Br 1.89101 * 125.83998 * 179.97438 * 21 20 18 23 23 C 1.40028 * 120.20893 * 0.25519 * 12 11 10 24 24 C 1.36305 * 120.10883 * 359.48125 * 23 12 11 25 25 H 0.97002 * 119.99485 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.05357 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.94613 * 179.97438 * 11 10 9 28 28 H 0.96991 * 120.00292 * 359.97438 * 15 13 12 29 29 H 1.07996 * 126.21399 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.94600 * 179.74271 * 23 12 11 31 31 H 1.07993 * 120.05591 * 180.23061 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3463 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8819 2.3963 1.2126 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2372 0.2865 9 6 1.3532 -2.4066 -0.3762 10 6 1.8268 -3.6495 0.0890 11 6 1.1916 -4.7986 -0.2769 12 6 0.0698 -4.7452 -1.1134 13 6 -0.6141 -5.9926 -1.5072 14 8 -0.2029 -7.0645 -1.1057 15 7 -1.6973 -5.9433 -2.3078 16 6 -2.3487 -7.1321 -2.6835 17 6 -1.9910 -8.3901 -2.3184 18 7 -2.8754 -9.2494 -2.8878 19 1 -2.8697 -10.2154 -2.8003 20 7 -3.7937 -8.4944 -3.6285 21 6 -3.4806 -7.2295 -3.5077 22 35 -4.3961 -5.7809 -4.3073 23 6 -0.4016 -3.5128 -1.5821 24 6 0.2238 -2.3580 -1.2172 25 1 -0.4849 0.8401 0.0004 26 1 2.6916 -3.6914 0.7345 27 1 1.5541 -5.7517 0.0788 28 1 -2.0276 -5.0882 -2.6248 29 1 -1.1565 -8.6584 -1.6876 30 1 -1.2647 -3.4769 -2.2304 31 1 -0.1428 -1.4077 -1.5762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413181251.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:42 Heat of formation + Delta-G solvation = 58.042442 kcal Electronic energy + Delta-G solvation = -19360.448027 eV Core-core repulsion = 16075.293397 eV Total energy + Delta-G solvation = -3285.154630 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 335.001 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36113 -39.09831 -37.21378 -34.39112 -33.96244 -32.42941 -30.57204 -30.05682 -29.53057 -28.65951 -25.90720 -23.02371 -21.80105 -21.16527 -20.53571 -19.36550 -18.67051 -17.59089 -16.29843 -15.85174 -15.37136 -15.25365 -14.55608 -14.10817 -14.04282 -13.97399 -13.31406 -13.03909 -12.78744 -12.18083 -12.01988 -11.53307 -11.42648 -11.33744 -11.32769 -11.03065 -10.78694 -10.56104 -10.46129 -10.11363 -9.64139 -9.42765 -9.40422 -9.14772 -7.87379 -7.75383 -7.52278 -7.11165 -4.67887 1.09669 1.62446 1.98759 2.55888 2.86685 2.88707 2.92096 2.96923 2.97941 3.68796 3.69536 3.80584 4.48692 4.63191 5.34554 5.47253 5.49206 5.75849 5.96613 6.00450 6.23290 6.70211 6.75124 6.83216 6.96668 7.04784 7.12113 7.28320 7.36299 7.56415 7.69733 7.78746 7.98504 8.03276 8.32330 8.55225 8.67105 8.82730 9.80267 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003160 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.420245 B = 8858.078515 C =10265.788995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.287 4.287 13 C 0.574 3.426 14 O -0.566 6.566 15 N -0.651 5.651 16 C 0.040 3.960 17 C 0.043 3.957 18 N -0.462 5.462 19 H 0.447 0.553 20 N -0.255 5.255 21 C 0.049 3.951 22 Br 0.033 6.967 23 C -0.061 4.061 24 C -0.177 4.177 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.411 0.589 29 H 0.212 0.788 30 H 0.089 0.911 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 -7.756 -6.705 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.291 4.291 13 C 0.372 3.628 14 O -0.448 6.448 15 N -0.296 5.296 16 C -0.067 4.067 17 C -0.105 4.105 18 N -0.178 5.178 19 H 0.292 0.708 20 N -0.082 5.082 21 C -0.198 4.198 22 Br 0.114 6.886 23 C -0.081 4.081 24 C -0.196 4.196 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.249 0.751 29 H 0.229 0.771 30 H 0.107 0.893 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.241 -8.549 -7.180 13.876 hybrid contribution 0.718 1.009 0.413 1.305 sum -7.523 -7.540 -6.767 12.619 Atomic orbital electron populations 1.69747 1.07958 1.30174 1.31052 1.26132 0.94834 1.02019 0.91859 0.86154 0.81121 0.80065 0.78950 1.17996 1.19299 1.19601 1.19931 0.98495 0.91185 1.36827 0.89521 1.17815 0.90309 0.92223 0.87058 1.20712 1.04660 0.92582 1.07881 1.20334 0.92632 0.97239 0.93408 1.18672 1.04861 0.90326 1.15282 1.18676 0.77981 0.90093 0.76074 1.90467 1.66288 1.31339 1.56722 1.43103 1.29674 1.06338 1.50471 1.17492 0.96535 0.88365 1.04310 1.23296 0.97597 0.88195 1.01414 1.46181 1.22654 1.09283 1.39644 0.70770 1.77249 1.13664 1.01387 1.15908 1.23594 0.98623 0.93466 1.04079 1.96758 1.75904 1.35304 1.80619 1.20480 0.97357 0.92584 0.97647 1.20975 0.99829 0.96933 1.01837 0.90109 0.88256 0.87949 0.75143 0.77136 0.89263 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.73 10.95 55.56 0.61 -17.13 16 2 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 3 Si 0.91 16.66 29.60 -169.99 -5.03 11.63 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.47 9.04 -37.75 -0.34 -10.81 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.16 5.58 -106.80 -0.60 2.57 16 10 C -0.24 -5.51 9.73 -39.27 -0.38 -5.90 16 11 C -0.02 -0.38 9.52 -39.60 -0.38 -0.75 16 12 C -0.29 -6.23 5.89 -104.73 -0.62 -6.84 16 13 C 0.57 11.54 7.73 -12.44 -0.10 11.44 16 14 O -0.57 -11.89 13.47 5.25 0.07 -11.82 16 15 N -0.65 -11.21 5.42 -10.94 -0.06 -11.27 16 16 C 0.04 0.64 6.93 -83.88 -0.58 0.06 16 17 C 0.04 0.63 10.87 -16.66 -0.18 0.45 16 18 N -0.46 -5.53 7.40 30.70 0.23 -5.30 16 19 H 0.45 3.47 8.96 -182.62 -1.64 1.84 16 20 N -0.25 -3.64 12.69 31.99 0.41 -3.23 16 21 C 0.05 0.72 7.72 -17.17 -0.13 0.59 16 22 Br 0.03 0.42 33.83 -68.01 -2.30 -1.88 16 23 C -0.06 -1.31 9.47 -39.61 -0.38 -1.69 16 24 C -0.18 -4.16 8.63 -39.27 -0.34 -4.50 16 25 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 26 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.10 2.16 7.63 -52.49 -0.40 1.76 16 28 H 0.41 6.53 6.54 -40.82 -0.27 6.26 16 29 H 0.21 3.12 5.84 -52.49 -0.31 2.81 16 30 H 0.09 1.63 6.37 -52.48 -0.33 1.29 16 31 H 0.12 2.90 6.15 -52.49 -0.32 2.58 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -27.11 296.69 -8.96 -36.07 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -3.24 Total: 12.27 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.11 Total: -13.81 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 1.18 Total: -36.93 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Atomic # 35 Polarization: 0.42 SS G_CDS: -2.30 Total: -1.88 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.11 -8.96 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413181251.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.112 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds