Wall clock time and date at job start Tue Mar 31 2020 18:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46631 * 2 1 4 4 N 1.46495 * 109.47212 * 240.00100 * 2 1 3 5 5 C 1.36937 * 120.00035 * 84.99857 * 4 2 1 6 6 H 1.07995 * 119.99986 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99882 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47066 * 90.00218 * 9 7 5 11 11 H 1.48500 * 109.47260 * 210.00299 * 9 7 5 12 12 H 1.48496 * 109.46872 * 330.00197 * 9 7 5 13 13 C 1.53001 * 109.47270 * 119.99421 * 2 1 3 14 14 H 1.09001 * 109.47009 * 184.99635 * 13 2 1 15 15 C 1.53008 * 109.46508 * 65.00480 * 13 2 1 16 16 N 1.46497 * 109.47201 * 305.00547 * 13 2 1 17 17 C 1.34777 * 119.99525 * 204.99403 * 16 13 2 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.53000 * 109.46787 * 294.99932 * 20 19 17 22 22 C 1.53004 * 109.46787 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47195 * 59.99765 * 22 21 20 24 24 C 1.53000 * 109.47164 * 60.00094 * 23 22 21 25 25 C 1.53004 * 109.46987 * 300.00032 * 24 23 22 26 26 C 1.52995 * 109.47195 * 59.99986 * 25 24 23 27 27 C 1.53000 * 109.46787 * 299.99752 * 25 24 23 28 28 C 1.52995 * 109.47195 * 174.99698 * 20 19 17 29 29 C 1.53000 * 109.47445 * 299.99832 * 23 22 21 30 30 H 1.09000 * 109.47318 * 300.00023 * 1 2 3 31 31 H 1.08998 * 109.47218 * 60.00250 * 1 2 3 32 32 H 1.09004 * 109.46631 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00166 * 264.99759 * 4 2 1 34 34 H 0.96999 * 120.00195 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47273 * 60.00263 * 15 13 2 36 36 H 1.08998 * 109.46811 * 179.97438 * 15 13 2 37 37 H 1.08994 * 109.47201 * 299.99808 * 15 13 2 38 38 H 0.97000 * 120.00580 * 25.00149 * 16 13 2 39 39 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 40 40 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 41 41 H 1.09000 * 109.47217 * 54.99834 * 20 19 17 42 42 H 1.09003 * 109.47289 * 60.00086 * 21 20 19 43 43 H 1.08998 * 109.47252 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46771 * 299.99612 * 22 21 20 45 45 H 1.09004 * 109.46944 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.47125 * 179.97438 * 24 23 22 47 47 H 1.09006 * 109.46850 * 59.99742 * 24 23 22 48 48 H 1.08994 * 109.46530 * 179.97438 * 25 24 23 49 49 H 1.08998 * 109.47557 * 59.99530 * 26 25 24 50 50 H 1.08998 * 109.47347 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.47289 * 299.99914 * 27 25 24 52 52 H 1.09004 * 109.46667 * 180.02562 * 27 25 24 53 53 H 1.08992 * 109.47370 * 300.00039 * 28 20 19 54 54 H 1.09000 * 109.47161 * 299.99983 * 29 23 22 55 55 H 1.09003 * 109.47289 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0074 -2.3757 6 1 1.8918 1.0403 -2.4243 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4498 9 14 2.7901 0.2700 -5.1183 10 1 4.1518 0.8561 -5.2032 11 1 2.5804 -0.6617 -6.2555 12 1 1.7792 1.3563 -5.1755 13 6 2.0400 -0.7211 1.2493 14 1 3.1264 -0.6442 1.2951 15 6 1.6353 -2.1954 1.1880 16 7 1.4558 -0.1035 2.4424 17 6 2.0912 -0.1937 3.6275 18 8 3.1468 -0.7857 3.7063 19 6 1.4934 0.4469 4.8536 20 6 2.4101 0.2043 6.0543 21 6 2.4598 -1.2934 6.3635 22 6 3.3760 -1.5360 7.5646 23 6 2.8337 -0.7819 8.7803 24 6 1.4247 -1.2828 9.1043 25 6 0.5085 -1.0402 7.9032 26 6 1.0509 -1.7942 6.6875 27 6 0.4588 0.4575 7.5940 28 6 1.8684 0.9584 7.2703 29 6 2.7840 0.7157 8.4712 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 3.2487 -2.3960 -4.2418 35 1 2.0700 -2.6549 0.3003 36 1 1.9990 -2.7093 2.0778 37 1 0.5491 -2.2724 1.1421 38 1 0.6117 0.3702 2.3794 39 1 1.3873 1.5192 4.6883 40 1 0.5139 0.0111 5.0504 41 1 3.4138 0.5610 5.8231 42 1 2.8458 -1.8306 5.4972 43 1 3.4118 -2.6029 7.7847 44 1 4.3798 -1.1791 7.3338 45 1 3.4862 -0.9551 9.6361 46 1 1.0385 -0.7458 9.9707 47 1 1.4602 -2.3497 9.3246 48 1 -0.4951 -1.3974 8.1339 49 1 1.0864 -2.8611 6.9078 50 1 0.3984 -1.6211 5.8317 51 1 0.0724 0.9947 8.4601 52 1 -0.1943 0.6303 6.7386 53 1 1.8329 2.0253 7.0500 54 1 3.7877 1.0726 8.2404 55 1 2.3971 1.2529 9.3371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485230143.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:44 Heat of formation + Delta-G solvation = -80.499269 kcal Electronic energy + Delta-G solvation = -30648.270082 eV Core-core repulsion = 26875.417738 eV Total energy + Delta-G solvation = -3772.852344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.56166 -40.68393 -38.41620 -35.58403 -34.74580 -33.55089 -33.45031 -33.37187 -31.24272 -29.83096 -29.33788 -26.69287 -26.18819 -25.83970 -24.58491 -22.42073 -22.25581 -22.05446 -21.01732 -20.59242 -19.45212 -18.15099 -17.99940 -16.87034 -16.65352 -16.44499 -16.01687 -15.80914 -15.63112 -15.23692 -15.17105 -15.02608 -14.74133 -14.59594 -14.18495 -14.12920 -13.98275 -13.80702 -13.55140 -13.31940 -13.13839 -13.09007 -13.03818 -12.94119 -12.79034 -12.63616 -12.55864 -12.13758 -11.99640 -11.86251 -11.71737 -11.67148 -11.66085 -11.61092 -11.56669 -11.48533 -10.95831 -10.84863 -10.44198 -10.39417 -10.26408 -9.97936 -9.03555 -7.94224 -5.23087 1.47238 1.49086 1.57118 1.77580 2.25320 2.58615 3.39642 3.59993 3.63787 3.67779 3.85871 3.97018 4.00598 4.09562 4.19117 4.22283 4.28046 4.33869 4.38800 4.40171 4.45860 4.48645 4.50322 4.60693 4.63690 4.66160 4.71811 4.73122 4.83194 4.88555 4.91986 4.95834 4.97579 5.01117 5.04620 5.11445 5.19972 5.20881 5.23965 5.25253 5.26539 5.29185 5.30475 5.33479 5.37573 5.50527 5.61649 5.62432 5.64252 5.68975 5.74458 5.77109 6.28024 6.69328 7.34242 7.41140 8.09275 8.31951 9.29470 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.002242 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.180317 B =12488.496233 C =12588.954066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.045 0.955 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.267 1.267 13 C 0.151 3.849 14 H 0.051 0.949 15 C -0.147 4.147 16 N -0.711 5.711 17 C 0.505 3.495 18 O -0.581 6.581 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.087 4.087 22 C -0.107 4.107 23 C -0.085 4.085 24 C -0.105 4.105 25 C -0.084 4.084 26 C -0.108 4.108 27 C -0.107 4.107 28 C -0.078 4.078 29 C -0.106 4.106 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.074 0.926 52 H 0.073 0.927 53 H 0.081 0.919 54 H 0.052 0.948 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 6.279 29.412 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.218 1.218 11 H -0.224 1.224 12 H -0.192 1.192 13 C 0.044 3.956 14 H 0.069 0.931 15 C -0.205 4.205 16 N -0.365 5.365 17 C 0.294 3.706 18 O -0.461 6.461 19 C -0.171 4.171 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.145 4.145 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.096 4.096 29 C -0.144 4.144 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.092 0.908 53 H 0.100 0.900 54 H 0.071 0.929 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.115 6.017 29.341 31.031 hybrid contribution 0.556 -0.311 -1.596 1.718 sum -7.558 5.706 27.745 29.317 Atomic orbital electron populations 1.22347 0.96500 1.01563 1.01237 1.20534 0.93930 0.94760 0.85098 0.93668 1.42676 1.78651 1.10521 1.05914 1.19616 1.34896 0.94267 0.88112 0.90439 1.25558 1.02974 0.96894 1.01533 1.69820 1.52626 1.10253 1.29453 0.85152 0.77802 0.77476 0.79406 1.21761 1.22364 1.19163 1.20801 0.97084 0.92960 0.84711 0.93066 1.22000 1.02172 0.95630 1.00734 1.46093 1.26319 1.56686 1.07371 1.21452 0.84356 0.79407 0.85392 1.90665 1.24661 1.44773 1.85976 1.21925 1.01495 1.03102 0.90613 1.20784 0.97843 0.95379 0.93362 1.21101 0.95957 0.96043 0.97431 1.21498 0.98034 0.99627 0.95299 1.21051 0.97090 0.95361 0.96841 1.21519 0.94334 1.00650 0.97698 1.21057 0.98869 0.95899 0.94418 1.21579 0.95606 0.99108 0.98289 1.21607 0.95787 0.94863 1.02187 1.21085 0.95559 0.99376 0.93607 1.21516 0.99283 0.95479 0.98109 0.90268 0.93935 0.93095 0.79062 0.94096 0.93355 0.93294 0.90888 0.74898 0.86606 0.86403 0.93152 0.92849 0.92789 0.93622 0.91208 0.90886 0.92539 0.90448 0.92987 0.92009 0.90720 0.90820 0.90044 0.92886 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.01 71.98 0.65 -4.21 16 2 C 0.17 6.28 2.93 44.99 0.13 6.41 16 3 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 4 N -0.74 -36.67 5.03 -322.95 -1.63 -38.30 16 5 C -0.24 -13.04 9.93 84.03 0.83 -12.21 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 8 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 9 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.15 5.21 2.62 45.00 0.12 5.32 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.13 16 15 C -0.15 -5.08 9.00 71.98 0.65 -4.43 16 16 N -0.71 -18.11 4.99 -442.52 -2.21 -20.32 16 17 C 0.51 13.42 7.51 87.66 0.66 14.07 16 18 O -0.58 -20.94 13.63 -3.04 -0.04 -20.98 16 19 C -0.13 -2.22 4.47 29.85 0.13 -2.09 16 20 C -0.05 -1.03 1.58 -10.79 -0.02 -1.05 16 21 C -0.09 -1.86 2.46 -10.79 -0.03 -1.88 16 22 C -0.11 -2.12 5.19 30.59 0.16 -1.96 16 23 C -0.09 -1.25 3.19 -10.79 -0.03 -1.29 16 24 C -0.10 -1.31 5.19 30.60 0.16 -1.15 16 25 C -0.08 -1.05 3.19 -10.79 -0.03 -1.09 16 26 C -0.11 -1.86 4.92 30.59 0.15 -1.71 16 27 C -0.11 -1.12 4.92 30.61 0.15 -0.97 16 28 C -0.08 -1.02 2.72 -10.79 -0.03 -1.05 16 29 C -0.11 -1.43 5.19 30.58 0.16 -1.27 16 30 H 0.08 1.71 6.29 -2.39 -0.02 1.69 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.61 6.57 -2.38 -0.02 1.60 16 33 H 0.38 20.24 5.77 -92.71 -0.54 19.70 16 34 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.05 1.93 6.29 -2.39 -0.02 1.92 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.07 2.23 6.57 -2.39 -0.02 2.21 16 38 H 0.41 7.70 6.58 -92.71 -0.61 7.09 16 39 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.12 1.51 4.82 -2.39 -0.01 1.50 16 41 H 0.05 1.21 7.95 -2.39 -0.02 1.20 16 42 H 0.05 1.56 5.95 -2.39 -0.01 1.55 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.03 6.32 -2.39 -0.02 1.01 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.07 0.65 6.54 -2.38 -0.02 0.64 16 53 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -69.67 392.56 2.45 -67.22 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.26 Total: 38.25 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.27 Total: -14.54 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.55 Total: -118.24 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.04 Total: -20.98 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.67 2.45 -67.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485230143.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.275 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds