Wall clock time and date at job start Tue Mar 31 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36929 * 119.99944 * 2 1 4 4 H 1.08002 * 120.00078 * 201.10647 * 3 2 1 5 5 C 1.38814 * 120.00336 * 21.10408 * 3 2 1 6 6 N 1.31617 * 120.00006 * 13.21634 * 5 3 2 7 7 Si 1.86807 * 119.99843 * 193.21101 * 5 3 2 8 8 H 1.48498 * 109.46798 * 90.00248 * 7 5 3 9 9 H 1.48501 * 109.46699 * 209.99982 * 7 5 3 10 10 H 1.48489 * 109.47388 * 330.00279 * 7 5 3 11 11 C 1.46504 * 119.99781 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46675 * 90.00425 * 11 2 1 13 13 H 1.08996 * 109.49604 * 54.93605 * 12 11 2 14 14 C 1.53040 * 109.52424 * 294.85143 * 12 11 2 15 15 C 1.53035 * 109.53592 * 178.66868 * 14 12 11 16 16 C 1.52758 * 109.38447 * 61.24424 * 15 14 12 17 17 N 1.46927 * 109.00851 * 305.58718 * 16 15 14 18 18 C 1.34782 * 120.63370 * 233.58670 * 17 16 15 19 19 O 1.21277 * 120.00251 * 179.71873 * 18 17 16 20 20 C 1.50695 * 119.99494 * 359.71481 * 18 17 16 21 21 C 1.53002 * 109.46974 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47244 * 179.97438 * 21 20 18 23 23 N 1.46501 * 109.47311 * 179.97438 * 22 21 20 24 24 C 1.34947 * 126.03617 * 124.71443 * 23 22 21 25 25 C 1.35315 * 107.74385 * 179.84651 * 24 23 22 26 26 C 1.39873 * 107.92223 * 0.41978 * 25 24 23 27 27 N 1.30837 * 108.19698 * 359.74175 * 26 25 24 28 28 C 1.46923 * 118.73720 * 53.30624 * 17 16 15 29 29 H 1.09001 * 109.47384 * 275.22478 * 1 2 3 30 30 H 1.09008 * 109.46942 * 35.22158 * 1 2 3 31 31 H 1.09000 * 109.47336 * 155.22068 * 1 2 3 32 32 H 0.96993 * 120.00034 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.47061 * 330.00804 * 11 2 1 34 34 H 1.08999 * 109.46883 * 210.00087 * 11 2 1 35 35 H 1.08994 * 109.46141 * 298.69033 * 14 12 11 36 36 H 1.09004 * 109.46101 * 58.64774 * 14 12 11 37 37 H 1.09001 * 109.49592 * 181.31369 * 15 14 12 38 38 H 1.08999 * 109.49986 * 301.38349 * 15 14 12 39 39 H 1.09004 * 109.51472 * 185.70513 * 16 15 14 40 40 H 1.08995 * 109.43638 * 65.42034 * 16 15 14 41 41 H 1.09001 * 109.47270 * 60.00424 * 20 18 17 42 42 H 1.08999 * 109.47737 * 299.99948 * 20 18 17 43 43 H 1.09001 * 109.46905 * 60.00042 * 21 20 18 44 44 H 1.08996 * 109.47095 * 299.99763 * 21 20 18 45 45 H 1.08999 * 109.47299 * 300.00310 * 22 21 20 46 46 H 1.09001 * 109.47072 * 60.00221 * 22 21 20 47 47 H 1.07994 * 126.12650 * 0.02562 * 24 23 22 48 48 H 1.08000 * 126.04242 * 180.16627 * 25 24 23 49 49 H 1.07994 * 125.89817 * 179.71558 * 26 25 24 50 50 H 1.08996 * 109.58872 * 66.43747 * 28 17 16 51 51 H 1.09005 * 109.58818 * 186.86048 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1753 1.2172 -0.3368 5 6 1.5254 2.3477 0.4328 6 7 0.3820 2.2783 1.0810 7 14 2.3085 4.0099 0.0956 8 1 1.8230 4.5303 -1.2078 9 1 1.9394 4.9593 1.1762 10 1 3.7852 3.8614 0.0502 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 2.9632 -0.9137 -1.9818 14 6 1.1185 -2.0183 -2.1260 15 6 1.3709 -2.4286 -3.5786 16 6 2.2311 -3.6907 -3.6067 17 7 3.4526 -3.4549 -2.8249 18 6 4.6674 -3.6734 -3.3663 19 8 5.6683 -3.4701 -2.7123 20 6 4.7818 -4.1705 -4.7843 21 6 6.2585 -4.3347 -5.1495 22 6 6.3748 -4.8401 -6.5890 23 7 7.7888 -4.9967 -6.9389 24 6 8.3723 -6.1225 -7.4007 25 6 9.6827 -5.8538 -7.6048 26 6 9.9097 -4.5209 -7.2468 27 7 8.7750 -4.0062 -6.8474 28 6 3.3248 -2.9703 -1.4438 29 1 -0.3634 0.0936 1.0234 30 1 -0.3633 0.8396 -0.5927 31 1 -0.3634 -0.9330 -0.4307 32 1 -0.0543 3.0901 1.3831 33 1 1.6083 -2.0282 0.5146 34 1 3.1499 -1.1382 0.5144 35 1 0.6197 -2.8323 -1.6002 36 1 0.4861 -1.1307 -2.1041 37 1 0.4189 -2.6248 -4.0719 38 1 1.8914 -1.6244 -4.0986 39 1 2.4967 -3.9274 -4.6370 40 1 1.6731 -4.5197 -3.1714 41 1 4.3179 -3.4518 -5.4599 42 1 4.2766 -5.1322 -4.8743 43 1 6.7221 -5.0537 -4.4739 44 1 6.7641 -3.3733 -5.0596 45 1 5.8693 -5.8015 -6.6786 46 1 5.9112 -4.1215 -7.2649 47 1 7.8809 -7.0676 -7.5784 48 1 10.4234 -6.5473 -7.9746 49 1 10.8578 -4.0058 -7.2918 50 1 2.8578 -3.7393 -0.8285 51 1 4.3118 -2.7317 -1.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566746192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:29 Heat of formation + Delta-G solvation = 58.327669 kcal Electronic energy + Delta-G solvation = -28674.667005 eV Core-core repulsion = 24804.294305 eV Total energy + Delta-G solvation = -3870.372700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.36171 -40.22589 -37.80379 -35.56407 -35.42029 -32.99440 -31.93511 -31.64161 -30.39987 -30.12372 -27.44918 -26.37666 -25.42538 -24.96495 -22.87882 -22.40384 -21.36188 -20.97392 -20.69455 -19.74595 -18.83805 -17.63451 -16.98329 -16.56677 -16.27971 -15.80249 -15.35958 -15.00285 -14.67283 -14.42205 -14.19766 -14.13920 -13.95537 -13.67776 -13.40599 -13.11234 -13.06942 -12.89225 -12.83957 -12.58616 -12.29335 -12.21942 -11.99788 -11.54737 -11.30729 -11.22320 -10.95172 -10.91441 -10.81758 -10.70758 -10.65622 -10.32489 -10.27290 -9.94758 -9.82507 -9.75505 -9.72170 -9.66749 -8.86715 -8.59680 -8.44758 -6.71159 -5.68392 -3.13300 1.64385 2.21968 2.61193 2.62059 3.01012 3.40835 3.47408 3.49157 4.08725 4.31411 4.47755 4.53374 4.59902 4.71155 4.78058 4.84778 4.90132 4.98560 5.03800 5.15015 5.17775 5.28201 5.29670 5.41447 5.45952 5.48332 5.61898 5.67466 5.70197 5.74802 5.82362 5.91501 5.98466 6.01400 6.10524 6.15939 6.31621 6.39422 6.46303 6.61875 6.68395 6.73566 6.80265 6.86006 6.99729 7.40427 7.44069 7.46056 7.75886 7.85247 8.18953 8.43022 9.28256 9.91902 10.39741 11.36215 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.002127 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.067770 B =13158.406510 C =14252.963287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.250 4.250 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.159 3.841 12 C -0.121 4.121 13 H 0.072 0.928 14 C -0.110 4.110 15 C -0.136 4.136 16 C 0.108 3.892 17 N -0.608 5.608 18 C 0.512 3.488 19 O -0.541 6.541 20 C -0.137 4.137 21 C -0.116 4.116 22 C 0.133 3.867 23 N -0.371 5.371 24 C 0.050 3.950 25 C -0.277 4.277 26 C 0.041 3.959 27 N -0.290 5.290 28 C 0.116 3.884 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.001 0.999 32 H 0.251 0.749 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.172 0.828 48 H 0.146 0.854 49 H 0.182 0.818 50 H 0.062 0.938 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -20.756 -18.236 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.030 3.970 12 C -0.143 4.143 13 H 0.091 0.909 14 C -0.148 4.148 15 C -0.174 4.174 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.300 3.700 19 O -0.418 6.418 20 C -0.178 4.178 21 C -0.155 4.155 22 C 0.012 3.988 23 N -0.153 5.153 24 C -0.096 4.096 25 C -0.307 4.307 26 C -0.145 4.145 27 N -0.111 5.111 28 C -0.006 4.006 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.189 0.811 48 H 0.163 0.837 49 H 0.199 0.801 50 H 0.081 0.919 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.977 -19.446 -17.315 26.956 hybrid contribution 0.592 0.215 -0.554 0.839 sum 7.569 -19.232 -17.869 27.321 Atomic orbital electron populations 1.20863 0.82671 0.95359 0.99327 1.43853 1.01784 1.00554 1.86008 1.19206 0.97128 0.85286 1.36349 0.91445 1.24972 0.97817 0.98362 0.98710 1.70080 1.18325 1.26732 1.40410 0.86270 0.78823 0.84223 0.77373 1.21623 1.21798 1.20503 1.20655 0.96180 0.88478 0.91653 1.22249 0.95042 0.95685 1.01306 0.90930 1.21589 0.98123 1.01684 0.93357 1.21875 0.99305 0.97198 0.99049 1.21674 0.85880 0.98313 0.95586 1.48181 1.05500 1.65635 1.14833 1.20479 0.82946 0.77796 0.88769 1.90719 1.35844 1.52061 1.63204 1.21598 0.98120 1.03100 0.94943 1.21596 0.95533 1.04400 0.93930 1.21781 0.76258 1.03171 0.97611 1.48757 1.08481 1.08038 1.50014 1.22581 0.94564 0.92405 1.00037 1.21520 0.96174 0.97866 1.15150 1.23929 0.97255 0.94590 0.98759 1.77423 0.96894 1.13413 1.23361 1.21729 1.01809 0.96105 0.80965 0.95478 0.94102 0.98019 0.93867 0.94563 0.93405 0.92797 0.90112 0.91158 0.91667 0.90320 0.91458 0.88535 0.88831 0.90589 0.89421 0.88580 0.89564 0.81060 0.83654 0.80110 0.91926 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.87 59.85 0.47 4.38 16 2 N -0.60 -14.85 2.75 -181.11 -0.50 -15.35 16 3 C -0.25 -6.92 9.67 -15.06 -0.15 -7.07 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 6 N -0.91 -26.75 10.61 55.49 0.59 -26.16 16 7 Si 0.90 22.34 29.57 -169.99 -5.03 17.31 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.16 3.20 5.14 -4.04 -0.02 3.18 16 12 C -0.12 -2.05 2.54 -90.50 -0.23 -2.28 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.11 -1.63 4.23 -26.69 -0.11 -1.74 16 15 C -0.14 -1.54 6.06 -26.84 -0.16 -1.71 16 16 C 0.11 1.02 6.31 -3.93 -0.02 1.00 16 17 N -0.61 -7.73 2.98 -173.03 -0.52 -8.25 16 18 C 0.51 6.80 7.70 -10.99 -0.08 6.72 16 19 O -0.54 -9.60 15.39 5.56 0.09 -9.51 16 20 C -0.14 -1.13 4.05 -27.88 -0.11 -1.24 16 21 C -0.12 -1.09 4.69 -26.73 -0.13 -1.22 16 22 C 0.13 0.91 6.51 -4.04 -0.03 0.88 16 23 N -0.37 -3.54 3.68 -61.36 -0.23 -3.76 16 24 C 0.05 0.38 11.45 -17.22 -0.20 0.19 16 25 C -0.28 -2.24 10.80 -40.01 -0.43 -2.67 16 26 C 0.04 0.39 12.03 -17.36 -0.21 0.19 16 27 N -0.29 -3.50 12.42 30.62 0.38 -3.12 16 28 C 0.12 1.73 5.72 -3.71 -0.02 1.71 16 29 H 0.03 0.72 7.38 -51.93 -0.38 0.33 16 30 H 0.04 1.07 7.22 -51.92 -0.38 0.69 16 31 H 0.00 0.03 6.20 -51.93 -0.32 -0.29 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.42 5.88 -51.93 -0.31 1.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.65 7.68 -51.93 -0.40 0.25 16 42 H 0.09 0.50 7.95 -51.93 -0.41 0.09 16 43 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 45 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.50 7.01 -51.93 -0.36 1.14 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -35.40 401.57 -9.43 -44.83 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.74 Total: -2.24 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.52 Total: 0.20 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.27 Total: -56.64 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.40 -9.43 -44.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566746192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.157 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds