Wall clock time and date at job start Tue Mar 31 2020 18:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36929 * 119.99944 * 2 1 4 4 H 1.08002 * 120.00078 * 201.10647 * 3 2 1 5 5 C 1.38814 * 120.00336 * 21.10408 * 3 2 1 6 6 N 1.31617 * 120.00006 * 13.21634 * 5 3 2 7 7 Si 1.86807 * 119.99843 * 193.21101 * 5 3 2 8 8 H 1.48498 * 109.46798 * 90.00248 * 7 5 3 9 9 H 1.48501 * 109.46699 * 209.99982 * 7 5 3 10 10 H 1.48489 * 109.47388 * 330.00279 * 7 5 3 11 11 C 1.46504 * 119.99781 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46675 * 90.00425 * 11 2 1 13 13 H 1.08996 * 109.49604 * 54.93605 * 12 11 2 14 14 C 1.53040 * 109.52424 * 294.85143 * 12 11 2 15 15 C 1.53035 * 109.53592 * 178.66868 * 14 12 11 16 16 C 1.52758 * 109.38447 * 61.24424 * 15 14 12 17 17 N 1.46927 * 109.00851 * 305.58718 * 16 15 14 18 18 C 1.34782 * 120.63370 * 233.58670 * 17 16 15 19 19 O 1.21277 * 120.00251 * 179.71873 * 18 17 16 20 20 C 1.50695 * 119.99494 * 359.71481 * 18 17 16 21 21 C 1.53002 * 109.46974 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.47244 * 179.97438 * 21 20 18 23 23 N 1.46501 * 109.47311 * 179.97438 * 22 21 20 24 24 C 1.34947 * 126.03617 * 124.71443 * 23 22 21 25 25 C 1.35315 * 107.74385 * 179.84651 * 24 23 22 26 26 C 1.39873 * 107.92223 * 0.41978 * 25 24 23 27 27 N 1.30837 * 108.19698 * 359.74175 * 26 25 24 28 28 C 1.46923 * 118.73720 * 53.30624 * 17 16 15 29 29 H 1.09001 * 109.47384 * 275.22478 * 1 2 3 30 30 H 1.09008 * 109.46942 * 35.22158 * 1 2 3 31 31 H 1.09000 * 109.47336 * 155.22068 * 1 2 3 32 32 H 0.96993 * 120.00034 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.47061 * 330.00804 * 11 2 1 34 34 H 1.08999 * 109.46883 * 210.00087 * 11 2 1 35 35 H 1.08994 * 109.46141 * 298.69033 * 14 12 11 36 36 H 1.09004 * 109.46101 * 58.64774 * 14 12 11 37 37 H 1.09001 * 109.49592 * 181.31369 * 15 14 12 38 38 H 1.08999 * 109.49986 * 301.38349 * 15 14 12 39 39 H 1.09004 * 109.51472 * 185.70513 * 16 15 14 40 40 H 1.08995 * 109.43638 * 65.42034 * 16 15 14 41 41 H 1.09001 * 109.47270 * 60.00424 * 20 18 17 42 42 H 1.08999 * 109.47737 * 299.99948 * 20 18 17 43 43 H 1.09001 * 109.46905 * 60.00042 * 21 20 18 44 44 H 1.08996 * 109.47095 * 299.99763 * 21 20 18 45 45 H 1.08999 * 109.47299 * 300.00310 * 22 21 20 46 46 H 1.09001 * 109.47072 * 60.00221 * 22 21 20 47 47 H 1.07994 * 126.12650 * 0.02562 * 24 23 22 48 48 H 1.08000 * 126.04242 * 180.16627 * 25 24 23 49 49 H 1.07994 * 125.89817 * 179.71558 * 26 25 24 50 50 H 1.08996 * 109.58872 * 66.43747 * 28 17 16 51 51 H 1.09005 * 109.58818 * 186.86048 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1753 1.2172 -0.3368 5 6 1.5254 2.3477 0.4328 6 7 0.3820 2.2783 1.0810 7 14 2.3085 4.0099 0.0956 8 1 1.8230 4.5303 -1.2078 9 1 1.9394 4.9593 1.1762 10 1 3.7852 3.8614 0.0502 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 2.9632 -0.9137 -1.9818 14 6 1.1185 -2.0183 -2.1260 15 6 1.3709 -2.4286 -3.5786 16 6 2.2311 -3.6907 -3.6067 17 7 3.4526 -3.4549 -2.8249 18 6 4.6674 -3.6734 -3.3663 19 8 5.6683 -3.4701 -2.7123 20 6 4.7818 -4.1705 -4.7843 21 6 6.2585 -4.3347 -5.1495 22 6 6.3748 -4.8401 -6.5890 23 7 7.7888 -4.9967 -6.9389 24 6 8.3723 -6.1225 -7.4007 25 6 9.6827 -5.8538 -7.6048 26 6 9.9097 -4.5209 -7.2468 27 7 8.7750 -4.0062 -6.8474 28 6 3.3248 -2.9703 -1.4438 29 1 -0.3634 0.0936 1.0234 30 1 -0.3633 0.8396 -0.5927 31 1 -0.3634 -0.9330 -0.4307 32 1 -0.0543 3.0901 1.3831 33 1 1.6083 -2.0282 0.5146 34 1 3.1499 -1.1382 0.5144 35 1 0.6197 -2.8323 -1.6002 36 1 0.4861 -1.1307 -2.1041 37 1 0.4189 -2.6248 -4.0719 38 1 1.8914 -1.6244 -4.0986 39 1 2.4967 -3.9274 -4.6370 40 1 1.6731 -4.5197 -3.1714 41 1 4.3179 -3.4518 -5.4599 42 1 4.2766 -5.1322 -4.8743 43 1 6.7221 -5.0537 -4.4739 44 1 6.7641 -3.3733 -5.0596 45 1 5.8693 -5.8015 -6.6786 46 1 5.9112 -4.1215 -7.2649 47 1 7.8809 -7.0676 -7.5784 48 1 10.4234 -6.5473 -7.9746 49 1 10.8578 -4.0058 -7.2918 50 1 2.8578 -3.7393 -0.8285 51 1 4.3118 -2.7317 -1.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566746192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:28 Heat of formation + Delta-G solvation = 36.058820 kcal Electronic energy + Delta-G solvation = -28675.632655 eV Core-core repulsion = 24804.294305 eV Total energy + Delta-G solvation = -3871.338350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97464 -41.26946 -39.07466 -37.21371 -36.13554 -34.49202 -32.96626 -32.73629 -31.88712 -30.85643 -28.35286 -28.13187 -27.12752 -25.97122 -24.01577 -23.42524 -22.49514 -21.92004 -21.39404 -21.10068 -19.80644 -18.70116 -18.34831 -17.79282 -17.12819 -17.02727 -16.59020 -16.15938 -15.78537 -15.61992 -15.39957 -15.13341 -15.06702 -14.85203 -14.54037 -14.45791 -14.23444 -13.93500 -13.71679 -13.58972 -13.38820 -13.10739 -12.98163 -12.87347 -12.77176 -12.72271 -12.50669 -12.35636 -12.10964 -12.00951 -11.92747 -11.84316 -11.65988 -11.51938 -11.45953 -11.19571 -10.84368 -10.62751 -10.35463 -9.61574 -9.47214 -8.76736 -7.84513 -5.31277 1.04270 1.41442 1.41894 1.51146 1.62899 1.68885 1.99044 2.07591 2.47747 3.26763 3.43441 3.63957 3.68009 3.84869 3.89655 4.01801 4.10325 4.11642 4.14896 4.23392 4.31397 4.37253 4.42481 4.46383 4.51813 4.60371 4.65521 4.68335 4.75523 4.81719 4.86394 4.90973 4.93045 4.96735 4.99571 5.03906 5.18262 5.21829 5.24886 5.25523 5.37342 5.50849 5.57030 5.59127 5.60968 5.74470 5.78174 6.23782 6.30578 6.48065 6.82237 7.14564 7.19759 7.88177 8.29030 9.17423 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.002127 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.067770 B =13158.406510 C =14252.963287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.614 5.614 3 C -0.257 4.257 4 H 0.059 0.941 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.963 3.037 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.155 3.845 12 C -0.105 4.105 13 H 0.033 0.967 14 C -0.108 4.108 15 C -0.131 4.131 16 C 0.107 3.893 17 N -0.609 5.609 18 C 0.501 3.499 19 O -0.600 6.600 20 C -0.124 4.124 21 C -0.107 4.107 22 C 0.132 3.868 23 N -0.381 5.381 24 C 0.056 3.944 25 C -0.292 4.292 26 C 0.027 3.973 27 N -0.348 5.348 28 C 0.124 3.876 29 H -0.002 1.002 30 H 0.012 0.988 31 H 0.042 0.958 32 H 0.248 0.752 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.142 0.858 46 H 0.096 0.904 47 H 0.214 0.786 48 H 0.167 0.833 49 H 0.195 0.805 50 H 0.084 0.916 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 -24.034 -21.060 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.338 5.338 3 C -0.388 4.388 4 H 0.077 0.923 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.792 3.208 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.201 1.201 11 C 0.029 3.971 12 C -0.127 4.127 13 H 0.052 0.948 14 C -0.146 4.146 15 C -0.169 4.169 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.291 3.709 19 O -0.481 6.481 20 C -0.164 4.164 21 C -0.146 4.146 22 C 0.012 3.988 23 N -0.164 5.164 24 C -0.090 4.090 25 C -0.321 4.321 26 C -0.158 4.158 27 N -0.171 5.171 28 C 0.001 3.999 29 H 0.016 0.984 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.160 0.840 46 H 0.114 0.886 47 H 0.231 0.769 48 H 0.184 0.816 49 H 0.212 0.788 50 H 0.102 0.898 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.783 -22.755 -20.173 30.955 hybrid contribution 0.997 1.172 0.354 1.579 sum 6.780 -21.583 -19.819 30.077 Atomic orbital electron populations 1.20595 0.82337 0.96187 0.97283 1.44053 1.02245 1.01285 1.86176 1.19401 0.96994 0.86830 1.35546 0.92343 1.25676 0.98610 1.01435 0.99118 1.70230 1.19471 1.27149 1.41548 0.85319 0.78091 0.80297 0.77089 1.21172 1.21765 1.20098 1.20823 0.95122 0.87199 0.93980 1.21919 0.96774 0.95555 0.98427 0.94792 1.21532 0.95801 1.01071 0.96152 1.21843 1.01165 0.97729 0.96133 1.22002 0.84098 0.97750 0.97607 1.48308 1.06890 1.64873 1.14045 1.21496 0.82104 0.76785 0.90480 1.90701 1.37843 1.54531 1.65014 1.21643 0.97671 1.05804 0.91236 1.21427 0.95989 1.01498 0.95696 1.22004 0.75563 1.05793 0.95404 1.49004 1.09034 1.08130 1.50194 1.23297 0.94525 0.93063 0.98121 1.21896 0.97294 0.97497 1.15454 1.24365 0.97419 0.95783 0.98278 1.77348 0.98382 1.15728 1.25618 1.21424 0.99685 0.95592 0.83242 0.98364 0.96905 0.93987 0.94260 0.92531 0.95206 0.90881 0.93150 0.88103 0.93393 0.86199 0.88959 0.86065 0.84143 0.92779 0.93949 0.84018 0.88583 0.76932 0.81591 0.78802 0.89831 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 7.87 127.77 1.01 9.86 16 2 N -0.61 -31.25 2.75 -726.92 -2.00 -33.25 16 3 C -0.26 -14.73 9.67 84.04 0.81 -13.92 16 4 H 0.06 3.38 7.86 -2.91 -0.02 3.35 16 5 C -0.05 -3.11 5.10 84.86 0.43 -2.67 16 6 N -0.94 -56.62 10.61 21.65 0.23 -56.39 16 7 Si 0.96 47.09 29.57 68.60 2.03 49.12 16 8 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 9 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 C 0.16 6.39 5.14 86.38 0.44 6.83 16 12 C -0.10 -3.58 2.54 -10.71 -0.03 -3.61 16 13 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 14 C -0.11 -3.00 4.23 30.62 0.13 -2.87 16 15 C -0.13 -2.51 6.06 30.53 0.19 -2.32 16 16 C 0.11 1.48 6.31 86.22 0.54 2.02 16 17 N -0.61 -14.15 2.98 -819.75 -2.44 -16.59 16 18 C 0.50 12.70 7.70 87.65 0.67 13.38 16 19 O -0.60 -22.14 15.39 -3.02 -0.05 -22.19 16 20 C -0.12 -1.60 4.05 29.85 0.12 -1.48 16 21 C -0.11 -1.91 4.69 30.60 0.14 -1.76 16 22 C 0.13 1.41 6.51 86.38 0.56 1.98 16 23 N -0.38 -6.68 3.68 -348.06 -1.28 -7.96 16 24 C 0.06 0.70 11.45 83.54 0.96 1.66 16 25 C -0.29 -4.28 10.80 21.99 0.24 -4.04 16 26 C 0.03 0.52 12.03 85.24 1.03 1.55 16 27 N -0.35 -8.60 12.42 -57.02 -0.71 -9.31 16 28 C 0.12 3.64 5.72 86.36 0.49 4.13 16 29 H 0.00 -0.11 7.38 -2.39 -0.02 -0.12 16 30 H 0.01 0.66 7.22 -2.38 -0.02 0.65 16 31 H 0.04 1.68 6.20 -2.39 -0.01 1.67 16 32 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.06 2.08 8.07 -2.39 -0.02 2.07 16 34 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.72 5.88 -2.38 -0.01 1.70 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 0.75 5.93 -2.38 -0.01 0.74 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 1.05 7.68 -2.39 -0.02 1.03 16 42 H 0.14 0.58 7.95 -2.39 -0.02 0.56 16 43 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 44 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 45 H 0.14 0.21 8.07 -2.39 -0.02 0.20 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.21 0.62 8.06 -2.91 -0.02 0.59 16 48 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 50 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.06 2.06 7.01 -2.38 -0.02 2.05 16 Total: -1.00 -85.58 401.57 4.41 -81.16 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.89 Total: 6.67 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 7.74 Total: 8.74 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -6.20 Total: -123.50 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -85.58 4.41 -81.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566746192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.221 kcal (2) G-P(sol) polarization free energy of solvation -85.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds