Wall clock time and date at job start Tue Mar 31 2020 18:03:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36935 * 119.99995 * 2 1
4 4 H 1.08005 * 119.99515 * 201.69522 * 3 2 1
5 5 C 1.38807 * 119.99936 * 21.69357 * 3 2 1
6 6 N 1.31619 * 120.00030 * 11.56559 * 5 3 2
7 7 Si 1.86800 * 119.99798 * 191.56301 * 5 3 2
8 8 H 1.48501 * 109.47390 * 60.00096 * 7 5 3
9 9 H 1.48505 * 109.47156 * 180.02562 * 7 5 3
10 10 H 1.48506 * 109.47172 * 299.99773 * 7 5 3
11 11 C 1.46504 * 119.99813 * 180.02562 * 2 1 3
12 12 C 1.53000 * 109.47134 * 269.99994 * 11 2 1
13 13 H 1.09001 * 109.52038 * 305.08014 * 12 11 2
14 14 C 1.53040 * 109.49779 * 65.16206 * 12 11 2
15 15 C 1.53038 * 109.53445 * 181.31769 * 14 12 11
16 16 C 1.53627 * 109.24357 * 298.51010 * 15 14 12
17 17 N 1.46926 * 108.53972 * 54.85696 * 16 15 14
18 18 C 1.34775 * 120.62528 * 126.37029 * 17 16 15
19 19 O 1.21277 * 119.99715 * 179.71721 * 18 17 16
20 20 C 1.50701 * 120.00163 * 359.44158 * 18 17 16
21 21 C 1.53003 * 109.46847 * 180.27509 * 20 18 17
22 22 C 1.53006 * 109.47014 * 180.02562 * 21 20 18
23 23 N 1.46493 * 109.47470 * 180.02562 * 22 21 20
24 24 C 1.34946 * 126.04035 * 124.99910 * 23 22 21
25 25 C 1.35318 * 107.74417 * 179.97438 * 24 23 22
26 26 C 1.39862 * 107.92323 * 359.97438 * 25 24 23
27 27 N 1.30836 * 108.20549 * 359.74239 * 26 25 24
28 28 C 1.46916 * 118.74144 * 306.09269 * 17 16 15
29 29 H 1.08997 * 109.46733 * 275.28996 * 1 2 3
30 30 H 1.09000 * 109.47278 * 35.29121 * 1 2 3
31 31 H 1.08998 * 109.46996 * 155.29122 * 1 2 3
32 32 H 0.97004 * 119.99460 * 180.02562 * 6 5 3
33 33 H 1.09004 * 109.46664 * 149.99529 * 11 2 1
34 34 H 1.09000 * 109.47168 * 30.00082 * 11 2 1
35 35 H 1.09003 * 109.45884 * 301.33688 * 14 12 11
36 36 H 1.09001 * 109.45875 * 61.29691 * 14 12 11
37 37 H 1.09002 * 109.50035 * 58.58963 * 15 14 12
38 38 H 1.09002 * 109.49445 * 178.65095 * 15 14 12
39 39 H 1.09000 * 109.73476 * 295.11817 * 16 15 14
40 40 H 1.08997 * 109.66045 * 174.55075 * 16 15 14
41 41 H 1.08997 * 109.47615 * 300.27541 * 20 18 17
42 42 H 1.09004 * 109.47288 * 60.27901 * 20 18 17
43 43 H 1.09004 * 109.47402 * 299.99826 * 21 20 18
44 44 H 1.08990 * 109.47268 * 60.00575 * 21 20 18
45 45 H 1.08996 * 109.46918 * 300.00276 * 22 21 20
46 46 H 1.09004 * 109.46904 * 59.99995 * 22 21 20
47 47 H 1.07993 * 126.12370 * 359.97438 * 24 23 22
48 48 H 1.08003 * 126.03615 * 180.02562 * 25 24 23
49 49 H 1.08004 * 125.89790 * 179.97438 * 26 25 24
50 50 H 1.08997 * 109.59003 * 173.65044 * 28 17 16
51 51 H 1.08998 * 109.58843 * 293.93404 * 28 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1724 1.2189 -0.3458
5 6 1.5294 2.3454 0.4444
6 7 0.3756 2.2748 1.0738
7 14 2.3322 4.0061 0.1491
8 1 2.4966 4.2240 -1.3106
9 1 1.4754 5.0780 0.7167
10 1 3.6632 4.0365 0.8071
11 6 2.1975 -1.2688 -0.0006
12 6 2.4525 -1.7111 1.4417
13 1 2.9630 -0.9141 1.9823
14 6 1.1182 -2.0186 2.1252
15 6 1.3700 -2.4296 3.5777
16 6 2.2299 -3.7024 3.6020
17 7 3.4520 -3.4554 2.8247
18 6 4.6664 -3.6751 3.3663
19 8 5.6676 -3.4723 2.7126
20 6 4.7804 -4.1667 4.7863
21 6 6.2570 -4.3263 5.1537
22 6 6.3728 -4.8260 6.5952
23 7 7.7866 -4.9783 6.9473
24 6 8.4079 -4.4098 8.0018
25 6 9.7041 -4.7972 7.9747
26 6 9.8810 -5.6314 6.8661
27 7 8.7309 -5.7454 6.2527
28 6 3.3249 -2.9704 1.4437
29 1 -0.3633 0.0947 1.0233
30 1 -0.3634 0.8388 -0.5937
31 1 -0.3633 -0.9336 -0.4296
32 1 -0.0580 3.0852 1.3839
33 1 3.1499 -1.1382 -0.5144
34 1 1.6084 -2.0282 -0.5147
35 1 0.4859 -1.1310 2.1033
36 1 0.6196 -2.8325 1.5987
37 1 1.8906 -1.6257 4.0982
38 1 0.4177 -2.6253 4.0707
39 1 1.6756 -4.5296 3.1587
40 1 2.4943 -3.9467 4.6308
41 1 4.3144 -3.4464 5.4588
42 1 4.2768 -5.1290 4.8792
43 1 6.7230 -5.0466 4.4813
44 1 6.7605 -3.3641 5.0610
45 1 5.9067 -4.1061 7.2679
46 1 5.8693 -5.7884 6.6876
47 1 7.9522 -3.7618 8.7357
48 1 10.4672 -4.5131 8.6843
49 1 10.8062 -6.1033 6.5698
50 1 4.3120 -2.7317 1.0479
51 1 2.8605 -3.7401 0.8273
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001566746193.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:03:33
Heat of formation + Delta-G solvation = 58.108731 kcal
Electronic energy + Delta-G solvation = -28808.805603 eV
Core-core repulsion = 24938.423409 eV
Total energy + Delta-G solvation = -3870.382194 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.33042 -40.13991 -37.69950 -35.54096 -35.37177 -32.92201 -31.86727 -31.54753
-30.38430 -30.10488 -27.40757 -26.31569 -25.41663 -24.89634 -22.83634 -22.31431
-21.32898 -20.95605 -20.66735 -19.64913 -18.77076 -17.58478 -16.92002 -16.62478
-16.25156 -15.71261 -15.26249 -14.85577 -14.72459 -14.38397 -14.23933 -14.08194
-13.83768 -13.58877 -13.41466 -13.13062 -12.96192 -12.82497 -12.77322 -12.54435
-12.31199 -12.14172 -11.92752 -11.44988 -11.22022 -11.20440 -10.98068 -10.80351
-10.79664 -10.72363 -10.51922 -10.37404 -10.15506 -9.95890 -9.83551 -9.71793
-9.66899 -9.60590 -8.83549 -8.56220 -8.40636 -6.73083 -5.70741 -3.14957
1.67345 2.25097 2.63775 2.68667 3.08403 3.40434 3.44946 3.46845
4.13309 4.37537 4.52150 4.52574 4.63493 4.79432 4.83361 4.91188
4.94757 5.03102 5.13267 5.23101 5.25546 5.32106 5.35067 5.48111
5.48647 5.51700 5.71344 5.73738 5.77042 5.78821 5.87352 5.99719
6.02298 6.10515 6.17060 6.24461 6.41383 6.42371 6.53772 6.70667
6.74380 6.76625 6.78469 6.98496 7.11995 7.39620 7.48198 7.51622
7.75167 7.83813 8.25539 8.42087 9.26696 9.89905 10.38240 11.34222
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.015093 B = 0.002207 C = 0.002058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1854.713841 B =12681.185245 C =13602.102614
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.165 3.835
2 N -0.599 5.599
3 C -0.250 4.250
4 H 0.067 0.933
5 C 0.000 4.000
6 N -0.911 5.911
7 Si 0.903 3.097
8 H -0.285 1.285
9 H -0.291 1.291
10 H -0.284 1.284
11 C 0.159 3.841
12 C -0.119 4.119
13 H 0.074 0.926
14 C -0.112 4.112
15 C -0.133 4.133
16 C 0.108 3.892
17 N -0.607 5.607
18 C 0.512 3.488
19 O -0.543 6.543
20 C -0.137 4.137
21 C -0.116 4.116
22 C 0.133 3.867
23 N -0.370 5.370
24 C 0.052 3.948
25 C -0.278 4.278
26 C 0.041 3.959
27 N -0.292 5.292
28 C 0.115 3.885
29 H 0.032 0.968
30 H 0.041 0.959
31 H -0.005 1.005
32 H 0.251 0.749
33 H 0.044 0.956
34 H 0.037 0.963
35 H 0.088 0.912
36 H 0.049 0.951
37 H 0.065 0.935
38 H 0.068 0.932
39 H 0.067 0.933
40 H 0.078 0.922
41 H 0.095 0.905
42 H 0.094 0.906
43 H 0.086 0.914
44 H 0.076 0.924
45 H 0.097 0.903
46 H 0.085 0.915
47 H 0.173 0.827
48 H 0.146 0.854
49 H 0.182 0.818
50 H 0.087 0.913
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.242 -17.027 14.656 23.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.322 5.322
3 C -0.379 4.379
4 H 0.085 0.915
5 C -0.197 4.197
6 N -0.556 5.556
7 Si 0.734 3.266
8 H -0.211 1.211
9 H -0.217 1.217
10 H -0.210 1.210
11 C 0.031 3.969
12 C -0.141 4.141
13 H 0.093 0.907
14 C -0.149 4.149
15 C -0.171 4.171
16 C -0.015 4.015
17 N -0.340 5.340
18 C 0.300 3.700
19 O -0.420 6.420
20 C -0.178 4.178
21 C -0.154 4.154
22 C 0.012 3.988
23 N -0.153 5.153
24 C -0.094 4.094
25 C -0.307 4.307
26 C -0.145 4.145
27 N -0.113 5.113
28 C -0.007 4.007
29 H 0.050 0.950
30 H 0.060 0.940
31 H 0.013 0.987
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.056 0.944
35 H 0.106 0.894
36 H 0.068 0.932
37 H 0.084 0.916
38 H 0.087 0.913
39 H 0.085 0.915
40 H 0.096 0.904
41 H 0.113 0.887
42 H 0.113 0.887
43 H 0.104 0.896
44 H 0.095 0.905
45 H 0.115 0.885
46 H 0.104 0.896
47 H 0.190 0.810
48 H 0.164 0.836
49 H 0.199 0.801
50 H 0.105 0.895
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 6.859 -17.271 13.333 22.871
hybrid contribution 0.673 1.454 0.846 1.812
sum 7.531 -15.817 14.179 22.537
Atomic orbital electron populations
1.20846 0.82588 0.95206 0.99280 1.43923 1.01838 1.00573 1.85826
1.19180 0.97508 0.85341 1.35907 0.91505 1.24976 0.97698 0.98367
0.98704 1.70046 1.17551 1.26906 1.41123 0.86350 0.78496 0.83874
0.77921 1.21130 1.21699 1.21036 1.20791 0.95820 0.88219 0.92111
1.22248 0.95112 0.95443 1.01287 0.90733 1.21589 0.98177 1.01925
0.93211 1.21992 0.99155 0.96821 0.99167 1.21870 0.85833 0.98270
0.95547 1.48182 1.05494 1.65331 1.15031 1.20473 0.82983 0.77754
0.88797 1.90710 1.35852 1.52162 1.63312 1.21598 0.98082 1.03167
0.94930 1.21589 0.95538 1.03785 0.94495 1.21786 0.76296 1.02720
0.98025 1.48750 1.09145 1.36836 1.20521 1.22601 0.94119 0.99754
0.92949 1.21518 0.96668 1.08616 1.03948 1.23909 0.96880 0.99065
0.94684 1.77390 0.98391 1.15777 1.19758 1.21773 1.01763 0.96206
0.80956 0.95007 0.94046 0.98668 0.93848 0.93756 0.94438 0.89375
0.93229 0.91642 0.91332 0.91484 0.90386 0.88657 0.88726 0.89566
0.90482 0.88504 0.89642 0.81010 0.83646 0.80143 0.89480 0.92141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 3.95 7.85 59.85 0.47 4.42 16
2 N -0.60 -14.71 2.75 -181.11 -0.50 -15.21 16
3 C -0.25 -6.83 9.68 -15.06 -0.15 -6.98 16
4 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16
5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16
6 N -0.91 -26.08 10.55 55.49 0.59 -25.49 16
7 Si 0.90 22.06 29.57 -169.99 -5.03 17.03 16
8 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
11 C 0.16 3.19 5.18 -4.04 -0.02 3.17 16
12 C -0.12 -2.14 2.54 -90.50 -0.23 -2.37 16
13 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16
14 C -0.11 -1.82 4.78 -26.69 -0.13 -1.94 16
15 C -0.13 -1.71 6.10 -26.39 -0.16 -1.87 16
16 C 0.11 1.13 6.37 -3.48 -0.02 1.11 16
17 N -0.61 -8.27 2.97 -172.51 -0.51 -8.78 16
18 C 0.51 7.20 7.70 -10.99 -0.08 7.12 16
19 O -0.54 -9.98 15.39 5.56 0.09 -9.89 16
20 C -0.14 -1.23 4.05 -27.88 -0.11 -1.34 16
21 C -0.12 -1.16 4.70 -26.73 -0.13 -1.28 16
22 C 0.13 0.98 6.51 -4.04 -0.03 0.95 16
23 N -0.37 -3.70 3.68 -61.37 -0.23 -3.92 16
24 C 0.05 0.43 11.45 -17.22 -0.20 0.23 16
25 C -0.28 -2.37 10.80 -40.02 -0.43 -2.80 16
26 C 0.04 0.40 12.02 -17.37 -0.21 0.19 16
27 N -0.29 -3.54 12.43 30.62 0.38 -3.16 16
28 C 0.12 1.80 5.71 -3.71 -0.02 1.78 16
29 H 0.03 0.80 5.88 -51.93 -0.31 0.50 16
30 H 0.04 1.08 7.22 -51.93 -0.38 0.71 16
31 H -0.01 -0.11 7.83 -51.93 -0.41 -0.52 16
32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
33 H 0.04 0.90 8.03 -51.93 -0.42 0.48 16
34 H 0.04 0.68 7.86 -51.93 -0.41 0.28 16
35 H 0.09 1.76 5.46 -51.93 -0.28 1.48 16
36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16
41 H 0.10 0.68 7.70 -51.93 -0.40 0.28 16
42 H 0.09 0.62 7.93 -51.93 -0.41 0.21 16
43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16
44 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16
45 H 0.10 0.45 8.07 -51.93 -0.42 0.03 16
46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16
47 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16
48 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16
49 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16
50 H 0.09 1.52 7.01 -51.93 -0.36 1.15 16
51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 401.68 15.07 6.05 6.05
Total: -1.00 -34.47 401.68 -9.41 -43.88
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: -8.71 Total: -0.79 kcal
Atomic # 6 Polarization: 1.83 SS G_CDS: -1.54 Total: 0.29 kcal
Atomic # 7 Polarization: -56.30 SS G_CDS: -0.27 Total: -56.57 kcal
Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -34.47 -9.41 -43.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566746193.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.986 kcal
(2) G-P(sol) polarization free energy of solvation -34.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds