Wall clock time and date at job start Tue Mar 31 2020 18:03:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36935 * 119.99995 * 2 1
4 4 H 1.08005 * 119.99515 * 201.69522 * 3 2 1
5 5 C 1.38807 * 119.99936 * 21.69357 * 3 2 1
6 6 N 1.31619 * 120.00030 * 11.56559 * 5 3 2
7 7 Si 1.86800 * 119.99798 * 191.56301 * 5 3 2
8 8 H 1.48501 * 109.47390 * 60.00096 * 7 5 3
9 9 H 1.48505 * 109.47156 * 180.02562 * 7 5 3
10 10 H 1.48506 * 109.47172 * 299.99773 * 7 5 3
11 11 C 1.46504 * 119.99813 * 180.02562 * 2 1 3
12 12 C 1.53000 * 109.47134 * 269.99994 * 11 2 1
13 13 H 1.09001 * 109.52038 * 305.08014 * 12 11 2
14 14 C 1.53040 * 109.49779 * 65.16206 * 12 11 2
15 15 C 1.53038 * 109.53445 * 181.31769 * 14 12 11
16 16 C 1.53627 * 109.24357 * 298.51010 * 15 14 12
17 17 N 1.46926 * 108.53972 * 54.85696 * 16 15 14
18 18 C 1.34775 * 120.62528 * 126.37029 * 17 16 15
19 19 O 1.21277 * 119.99715 * 179.71721 * 18 17 16
20 20 C 1.50701 * 120.00163 * 359.44158 * 18 17 16
21 21 C 1.53003 * 109.46847 * 180.27509 * 20 18 17
22 22 C 1.53006 * 109.47014 * 180.02562 * 21 20 18
23 23 N 1.46493 * 109.47470 * 180.02562 * 22 21 20
24 24 C 1.34946 * 126.04035 * 124.99910 * 23 22 21
25 25 C 1.35318 * 107.74417 * 179.97438 * 24 23 22
26 26 C 1.39862 * 107.92323 * 359.97438 * 25 24 23
27 27 N 1.30836 * 108.20549 * 359.74239 * 26 25 24
28 28 C 1.46916 * 118.74144 * 306.09269 * 17 16 15
29 29 H 1.08997 * 109.46733 * 275.28996 * 1 2 3
30 30 H 1.09000 * 109.47278 * 35.29121 * 1 2 3
31 31 H 1.08998 * 109.46996 * 155.29122 * 1 2 3
32 32 H 0.97004 * 119.99460 * 180.02562 * 6 5 3
33 33 H 1.09004 * 109.46664 * 149.99529 * 11 2 1
34 34 H 1.09000 * 109.47168 * 30.00082 * 11 2 1
35 35 H 1.09003 * 109.45884 * 301.33688 * 14 12 11
36 36 H 1.09001 * 109.45875 * 61.29691 * 14 12 11
37 37 H 1.09002 * 109.50035 * 58.58963 * 15 14 12
38 38 H 1.09002 * 109.49445 * 178.65095 * 15 14 12
39 39 H 1.09000 * 109.73476 * 295.11817 * 16 15 14
40 40 H 1.08997 * 109.66045 * 174.55075 * 16 15 14
41 41 H 1.08997 * 109.47615 * 300.27541 * 20 18 17
42 42 H 1.09004 * 109.47288 * 60.27901 * 20 18 17
43 43 H 1.09004 * 109.47402 * 299.99826 * 21 20 18
44 44 H 1.08990 * 109.47268 * 60.00575 * 21 20 18
45 45 H 1.08996 * 109.46918 * 300.00276 * 22 21 20
46 46 H 1.09004 * 109.46904 * 59.99995 * 22 21 20
47 47 H 1.07993 * 126.12370 * 359.97438 * 24 23 22
48 48 H 1.08003 * 126.03615 * 180.02562 * 25 24 23
49 49 H 1.08004 * 125.89790 * 179.97438 * 26 25 24
50 50 H 1.08997 * 109.59003 * 173.65044 * 28 17 16
51 51 H 1.08998 * 109.58843 * 293.93404 * 28 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1724 1.2189 -0.3458
5 6 1.5294 2.3454 0.4444
6 7 0.3756 2.2748 1.0738
7 14 2.3322 4.0061 0.1491
8 1 2.4966 4.2240 -1.3106
9 1 1.4754 5.0780 0.7167
10 1 3.6632 4.0365 0.8071
11 6 2.1975 -1.2688 -0.0006
12 6 2.4525 -1.7111 1.4417
13 1 2.9630 -0.9141 1.9823
14 6 1.1182 -2.0186 2.1252
15 6 1.3700 -2.4296 3.5777
16 6 2.2299 -3.7024 3.6020
17 7 3.4520 -3.4554 2.8247
18 6 4.6664 -3.6751 3.3663
19 8 5.6676 -3.4723 2.7126
20 6 4.7804 -4.1667 4.7863
21 6 6.2570 -4.3263 5.1537
22 6 6.3728 -4.8260 6.5952
23 7 7.7866 -4.9783 6.9473
24 6 8.4079 -4.4098 8.0018
25 6 9.7041 -4.7972 7.9747
26 6 9.8810 -5.6314 6.8661
27 7 8.7309 -5.7454 6.2527
28 6 3.3249 -2.9704 1.4437
29 1 -0.3633 0.0947 1.0233
30 1 -0.3634 0.8388 -0.5937
31 1 -0.3633 -0.9336 -0.4296
32 1 -0.0580 3.0852 1.3839
33 1 3.1499 -1.1382 -0.5144
34 1 1.6084 -2.0282 -0.5147
35 1 0.4859 -1.1310 2.1033
36 1 0.6196 -2.8325 1.5987
37 1 1.8906 -1.6257 4.0982
38 1 0.4177 -2.6253 4.0707
39 1 1.6756 -4.5296 3.1587
40 1 2.4943 -3.9467 4.6308
41 1 4.3144 -3.4464 5.4588
42 1 4.2768 -5.1290 4.8792
43 1 6.7230 -5.0466 4.4813
44 1 6.7605 -3.3641 5.0610
45 1 5.9067 -4.1061 7.2679
46 1 5.8693 -5.7884 6.6876
47 1 7.9522 -3.7618 8.7357
48 1 10.4672 -4.5131 8.6843
49 1 10.8062 -6.1033 6.5698
50 1 4.3120 -2.7317 1.0479
51 1 2.8605 -3.7401 0.8273
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001566746193.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:03:32
Heat of formation + Delta-G solvation = 36.967842 kcal
Electronic energy + Delta-G solvation = -28809.722341 eV
Core-core repulsion = 24938.423409 eV
Total energy + Delta-G solvation = -3871.298932 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.97792 -41.25369 -39.03468 -37.19235 -36.13986 -34.44173 -32.95131 -32.72102
-31.87655 -30.86242 -28.34544 -28.09456 -27.09895 -25.96052 -24.00717 -23.41711
-22.50174 -21.93062 -21.38708 -21.05757 -19.81701 -18.71401 -18.36559 -17.80496
-17.06392 -16.99832 -16.56888 -16.10963 -15.93602 -15.60960 -15.37919 -15.23019
-14.93321 -14.86744 -14.54273 -14.43845 -14.17827 -13.90965 -13.70673 -13.59452
-13.31185 -13.13348 -12.98434 -12.87493 -12.74049 -12.70126 -12.54811 -12.25532
-12.11079 -12.01425 -11.94423 -11.89898 -11.59255 -11.50325 -11.47840 -11.16728
-10.84019 -10.60504 -10.35472 -9.60978 -9.47858 -8.74551 -7.82976 -5.28607
1.03027 1.42944 1.44084 1.50759 1.62560 1.67891 1.98572 2.08222
2.49398 3.29793 3.42624 3.64965 3.69424 3.84488 3.90423 4.03668
4.08540 4.12398 4.14481 4.23519 4.33385 4.37570 4.43233 4.44045
4.52932 4.60478 4.65892 4.69243 4.73924 4.84044 4.87371 4.90244
4.92151 4.95527 4.99188 5.03010 5.17708 5.22633 5.24976 5.30111
5.37370 5.50417 5.58440 5.60661 5.65280 5.78391 5.84408 6.21489
6.33431 6.47985 6.81189 7.16790 7.19300 7.89796 8.31193 9.19345
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.015093 B = 0.002207 C = 0.002058
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1854.713841 B =12681.185245 C =13602.102614
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.182 3.818
2 N -0.614 5.614
3 C -0.260 4.260
4 H 0.060 0.940
5 C -0.050 4.050
6 N -0.933 5.933
7 Si 0.962 3.038
8 H -0.280 1.280
9 H -0.290 1.290
10 H -0.283 1.283
11 C 0.154 3.846
12 C -0.104 4.104
13 H 0.026 0.974
14 C -0.108 4.108
15 C -0.128 4.128
16 C 0.109 3.891
17 N -0.610 5.610
18 C 0.501 3.499
19 O -0.599 6.599
20 C -0.125 4.125
21 C -0.106 4.106
22 C 0.133 3.867
23 N -0.381 5.381
24 C 0.053 3.947
25 C -0.292 4.292
26 C 0.028 3.972
27 N -0.344 5.344
28 C 0.124 3.876
29 H 0.015 0.985
30 H 0.009 0.991
31 H 0.028 0.972
32 H 0.247 0.753
33 H 0.034 0.966
34 H 0.064 0.936
35 H 0.047 0.953
36 H 0.071 0.929
37 H 0.043 0.957
38 H 0.096 0.904
39 H 0.092 0.908
40 H 0.120 0.880
41 H 0.126 0.874
42 H 0.133 0.867
43 H 0.051 0.949
44 H 0.045 0.955
45 H 0.134 0.866
46 H 0.103 0.897
47 H 0.209 0.791
48 H 0.166 0.834
49 H 0.198 0.802
50 H 0.059 0.941
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.318 -18.862 17.004 26.170
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.337 5.337
3 C -0.391 4.391
4 H 0.078 0.922
5 C -0.245 4.245
6 N -0.580 5.580
7 Si 0.791 3.209
8 H -0.206 1.206
9 H -0.216 1.216
10 H -0.209 1.209
11 C 0.028 3.972
12 C -0.126 4.126
13 H 0.045 0.955
14 C -0.145 4.145
15 C -0.167 4.167
16 C -0.013 4.013
17 N -0.342 5.342
18 C 0.291 3.709
19 O -0.480 6.480
20 C -0.164 4.164
21 C -0.145 4.145
22 C 0.012 3.988
23 N -0.164 5.164
24 C -0.093 4.093
25 C -0.321 4.321
26 C -0.157 4.157
27 N -0.166 5.166
28 C 0.001 3.999
29 H 0.033 0.967
30 H 0.028 0.972
31 H 0.047 0.953
32 H 0.057 0.943
33 H 0.052 0.948
34 H 0.082 0.918
35 H 0.066 0.934
36 H 0.090 0.910
37 H 0.062 0.938
38 H 0.114 0.886
39 H 0.110 0.890
40 H 0.138 0.862
41 H 0.144 0.856
42 H 0.151 0.849
43 H 0.070 0.930
44 H 0.064 0.936
45 H 0.152 0.848
46 H 0.121 0.879
47 H 0.226 0.774
48 H 0.183 0.817
49 H 0.215 0.785
50 H 0.077 0.923
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 5.924 -19.142 15.691 25.450
hybrid contribution 0.993 2.006 0.071 2.239
sum 6.917 -17.137 15.762 24.289
Atomic orbital electron populations
1.20593 0.82309 0.95469 0.97893 1.44097 1.02269 1.01286 1.86013
1.19403 0.97428 0.86880 1.35374 0.92226 1.25653 0.98496 1.01306
0.99086 1.70195 1.18548 1.27170 1.42058 0.85427 0.77531 0.80163
0.77817 1.20618 1.21624 1.20878 1.20945 0.95336 0.87160 0.93782
1.21927 0.96408 0.95173 0.99068 0.95529 1.21495 0.96074 1.00920
0.96025 1.21951 1.00902 0.97471 0.96333 1.22156 0.84056 0.97359
0.97681 1.48313 1.06833 1.64663 1.14356 1.21477 0.82129 0.76743
0.90526 1.90691 1.37751 1.54540 1.65059 1.21643 0.97748 1.05635
0.91414 1.21417 0.95889 1.01161 0.96035 1.21987 0.75650 1.04566
0.96555 1.48993 1.09785 1.36767 1.20843 1.23265 0.94128 0.99173
0.92771 1.21890 0.97659 1.08538 1.04032 1.24376 0.97100 0.99214
0.94996 1.77316 0.99720 1.17882 1.21665 1.21470 0.99739 0.95598
0.83122 0.96731 0.97168 0.95322 0.94345 0.94777 0.91785 0.93447
0.91035 0.93836 0.88606 0.88965 0.86228 0.85557 0.84873 0.92984
0.93646 0.84824 0.87882 0.77401 0.81670 0.78497 0.92264 0.89775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.82 7.85 127.77 1.00 9.82 16
2 N -0.61 -30.81 2.75 -726.92 -2.00 -32.81 16
3 C -0.26 -14.69 9.68 84.03 0.81 -13.88 16
4 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16
5 C -0.05 -2.86 5.13 84.86 0.44 -2.43 16
6 N -0.93 -54.88 10.55 21.65 0.23 -54.65 16
7 Si 0.96 46.33 29.57 68.60 2.03 48.36 16
8 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16
9 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16
10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16
11 C 0.15 6.27 5.18 86.38 0.45 6.72 16
12 C -0.10 -3.77 2.54 -10.72 -0.03 -3.80 16
13 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
14 C -0.11 -3.38 4.78 30.62 0.15 -3.23 16
15 C -0.13 -2.95 6.10 30.82 0.19 -2.77 16
16 C 0.11 1.79 6.37 86.51 0.55 2.34 16
17 N -0.61 -15.40 2.97 -818.10 -2.43 -17.82 16
18 C 0.50 13.54 7.70 87.66 0.67 14.21 16
19 O -0.60 -22.84 15.39 -3.02 -0.05 -22.88 16
20 C -0.12 -1.83 4.05 29.85 0.12 -1.71 16
21 C -0.11 -2.02 4.70 30.60 0.14 -1.88 16
22 C 0.13 1.58 6.51 86.38 0.56 2.14 16
23 N -0.38 -7.06 3.68 -348.07 -1.28 -8.34 16
24 C 0.05 0.75 11.45 83.54 0.96 1.71 16
25 C -0.29 -4.58 10.80 21.99 0.24 -4.34 16
26 C 0.03 0.55 12.02 85.23 1.02 1.58 16
27 N -0.34 -8.38 12.43 -57.03 -0.71 -9.08 16
28 C 0.12 3.81 5.71 86.37 0.49 4.31 16
29 H 0.01 0.76 5.88 -2.39 -0.01 0.74 16
30 H 0.01 0.52 7.22 -2.39 -0.02 0.50 16
31 H 0.03 1.16 7.83 -2.39 -0.02 1.14 16
32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16
33 H 0.03 1.43 8.03 -2.38 -0.02 1.41 16
34 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16
35 H 0.05 1.90 5.46 -2.39 -0.01 1.89 16
36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.12 1.04 5.93 -2.39 -0.01 1.03 16
41 H 0.13 1.15 7.70 -2.39 -0.02 1.14 16
42 H 0.13 1.01 7.93 -2.39 -0.02 0.99 16
43 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16
44 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16
45 H 0.13 0.60 8.07 -2.39 -0.02 0.58 16
46 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16
47 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16
48 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16
49 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16
50 H 0.06 2.15 7.01 -2.39 -0.02 2.14 16
51 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16
Total: -1.00 -82.50 401.68 4.46 -78.04
By element:
Atomic # 1 Polarization: 9.51 SS G_CDS: 0.89 Total: 10.41 kcal
Atomic # 6 Polarization: 1.02 SS G_CDS: 7.77 Total: 8.79 kcal
Atomic # 7 Polarization: -116.52 SS G_CDS: -6.19 Total: -122.71 kcal
Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.88 kcal
Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal
Total: -82.50 4.46 -78.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566746193.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.008 kcal
(2) G-P(sol) polarization free energy of solvation -82.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds