Wall clock time and date at job start Tue Mar 31 2020 19:16:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86803 * 120.00123 * 2 1
4 4 H 1.48492 * 109.46973 * 269.99872 * 3 2 1
5 5 H 1.48497 * 109.46803 * 30.00436 * 3 2 1
6 6 H 1.48503 * 109.47059 * 150.00315 * 3 2 1
7 7 C 1.37884 * 119.99979 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99874 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99785 * 180.02562 * 7 2 1
10 10 N 1.46500 * 109.46711 * 179.97438 * 9 7 2
11 11 C 1.34779 * 119.99896 * 179.97438 * 10 9 7
12 12 O 1.21484 * 120.00123 * 359.97438 * 11 10 9
13 13 C 1.48371 * 119.99809 * 179.97438 * 11 10 9
14 14 C 1.40226 * 119.21902 * 180.02562 * 13 11 10
15 15 C 1.36635 * 119.90261 * 179.97438 * 14 13 11
16 16 C 1.40567 * 118.11051 * 359.97438 * 15 14 13
17 17 C 1.40390 * 122.05817 * 180.02562 * 16 15 14
18 18 N 1.31246 * 119.89636 * 180.02562 * 17 16 15
19 19 C 1.32583 * 122.70031 * 359.95128 * 18 17 16
20 20 C 1.36203 * 121.97515 * 0.04990 * 19 18 17
21 21 Br 1.89097 * 120.62548 * 179.97438 * 20 19 18
22 22 C 1.41032 * 118.74512 * 359.97438 * 20 19 18
23 23 N 1.31987 * 119.22431 * 359.97438 * 13 11 10
24 24 H 0.97002 * 119.99553 * 359.97438 * 1 2 3
25 25 H 1.08998 * 109.47423 * 60.00210 * 9 7 2
26 26 H 1.08994 * 109.46950 * 299.99011 * 9 7 2
27 27 H 0.97001 * 120.00306 * 359.97438 * 10 9 7
28 28 H 1.08000 * 120.04718 * 0.24491 * 14 13 11
29 29 H 1.07999 * 120.94219 * 179.97438 * 15 14 13
30 30 H 1.07999 * 120.05271 * 359.95608 * 17 16 15
31 31 H 1.07997 * 119.00976 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4401 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5116 -1.1941 0.0000
10 7 3.9998 -2.5753 -0.0001
11 6 5.3249 -2.8216 -0.0001
12 8 6.1144 -1.8983 -0.0006
13 6 5.8194 -4.2205 0.0003
14 6 7.2014 -4.4580 0.0008
15 6 7.6721 -5.7407 0.0017
16 6 6.7364 -6.7896 0.0028
17 6 7.1281 -8.1377 0.0043
18 7 6.2181 -9.0834 0.0047
19 6 4.9175 -8.8259 0.0047
20 6 4.4344 -7.5525 0.0032
21 35 2.5713 -7.2290 0.0024
22 6 5.3499 -6.4797 0.0022
23 7 4.9482 -5.2119 0.0013
24 1 -0.4849 0.8401 0.0004
25 1 3.8746 -0.6809 0.8905
26 1 3.8752 -0.6798 -0.8895
27 1 3.3695 -3.3126 -0.0001
28 1 7.8927 -3.6282 0.0048
29 1 8.7330 -5.9429 0.0017
30 1 8.1767 -8.3962 0.0040
31 1 4.2203 -9.6507 0.0055
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568272451.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:16:00
Heat of formation + Delta-G solvation = 35.190818 kcal
Electronic energy + Delta-G solvation = -19436.660509 eV
Core-core repulsion = 16150.514958 eV
Total energy + Delta-G solvation = -3286.145550 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 335.001 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.60482 -39.42110 -37.85605 -34.65752 -34.20066 -32.62215 -32.10650 -31.46132
-29.61166 -28.19788 -25.74726 -24.61623 -22.80619 -22.31048 -20.48570 -19.00403
-18.43130 -17.52428 -16.76348 -16.06442 -15.51310 -15.50146 -15.01986 -14.59763
-14.58433 -14.39483 -13.85323 -13.44956 -13.11139 -12.99805 -12.63095 -12.36219
-12.19420 -11.80170 -11.07528 -10.80638 -10.56407 -10.46158 -10.31479 -10.03603
-9.96735 -9.59359 -9.51269 -9.47672 -8.80345 -8.74212 -8.26645 -6.21574
-4.24383 -0.39278 0.18198 1.35940 1.36799 2.28527 3.21553 3.25673
3.31414 3.39049 3.39592 3.79162 3.81533 3.92253 4.08304 4.25118
4.31226 4.32152 4.70165 4.92150 5.01187 5.03976 5.12973 5.32297
5.47500 5.69723 5.82697 6.14050 6.69805 6.98950 7.03886 7.28613
7.33668 7.35847 8.05658 8.44027 8.63266 8.81233 9.36876 10.90340
Molecular weight = 335.00amu
Principal moments of inertia in cm(-1)
A = 0.015348 B = 0.004079 C = 0.003228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1823.876755 B = 6863.112250 C = 8671.844926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.079 3.921
3 Si 0.876 3.124
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.260 1.260
7 C -0.545 4.545
8 H 0.082 0.918
9 C 0.217 3.783
10 N -0.672 5.672
11 C 0.546 3.454
12 O -0.544 6.544
13 C 0.160 3.840
14 C -0.127 4.127
15 C -0.037 4.037
16 C -0.155 4.155
17 C 0.174 3.826
18 N -0.480 5.480
19 C 0.122 3.878
20 C -0.118 4.118
21 Br 0.001 6.999
22 C 0.172 3.828
23 N -0.439 5.439
24 H 0.268 0.732
25 H 0.031 0.969
26 H 0.026 0.974
27 H 0.410 0.590
28 H 0.159 0.841
29 H 0.156 0.844
30 H 0.175 0.825
31 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.517 -19.303 0.038 23.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.125 4.125
3 Si 0.702 3.298
4 H -0.198 1.198
5 H -0.208 1.208
6 H -0.185 1.185
7 C -0.582 4.582
8 H 0.100 0.900
9 C 0.095 3.905
10 N -0.319 5.319
11 C 0.328 3.672
12 O -0.422 6.422
13 C 0.005 3.995
14 C -0.148 4.148
15 C -0.065 4.065
16 C -0.160 4.160
17 C 0.000 4.000
18 N -0.188 5.188
19 C -0.024 4.024
20 C -0.201 4.201
21 Br 0.086 6.914
22 C 0.041 3.959
23 N -0.150 5.150
24 H 0.078 0.922
25 H 0.049 0.951
26 H 0.044 0.956
27 H 0.246 0.754
28 H 0.177 0.823
29 H 0.174 0.826
30 H 0.192 0.808
31 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 12.296 -19.172 0.041 22.776
hybrid contribution 0.962 1.164 -0.023 1.510
sum 13.257 -18.008 0.018 22.361
Atomic orbital electron populations
1.69881 1.06202 1.27417 1.49215 1.24780 0.94784 0.99066 0.93854
0.86838 0.80587 0.83320 0.79069 1.19797 1.20841 1.18480 1.21069
0.88248 0.95441 1.53484 0.89990 1.19655 0.95704 0.77949 0.97178
1.46188 1.05357 1.11970 1.68406 1.17896 0.84014 0.85984 0.79289
1.90752 1.55750 1.43778 1.51907 1.22025 0.90687 0.94038 0.92728
1.21945 0.95901 0.98581 0.98340 1.21441 1.00061 0.91122 0.93892
1.19889 0.94283 0.96828 1.05014 1.23382 0.99866 0.86569 0.90166
1.67641 1.01506 1.36915 1.12735 1.22366 0.92220 0.94204 0.93630
1.22700 0.93406 0.95063 1.08889 1.96861 1.00596 1.96891 1.97043
1.18469 0.90256 0.91140 0.95993 1.68035 1.37562 0.98329 1.11123
0.92224 0.95149 0.95593 0.75389 0.82317 0.82638 0.80801 0.81417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16
2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16
3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16
4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16
7 C -0.54 -15.04 9.83 -34.44 -0.34 -15.37 16
8 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16
9 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16
10 N -0.67 -14.27 5.54 -62.26 -0.34 -14.61 16
11 C 0.55 10.60 7.82 -12.09 -0.09 10.50 16
12 O -0.54 -11.68 16.28 5.38 0.09 -11.60 16
13 C 0.16 2.49 6.75 -82.88 -0.56 1.93 16
14 C -0.13 -1.48 9.54 -39.41 -0.38 -1.86 16
15 C -0.04 -0.32 9.92 -39.28 -0.39 -0.71 16
16 C -0.15 -1.59 5.75 -106.74 -0.61 -2.20 16
17 C 0.17 1.42 11.05 -16.99 -0.19 1.24 16
18 N -0.48 -4.78 10.30 -13.16 -0.14 -4.91 16
19 C 0.12 1.25 10.81 -17.96 -0.19 1.06 16
20 C -0.12 -1.45 6.26 -39.26 -0.25 -1.70 16
21 Br 0.00 0.01 33.31 -68.01 -2.27 -2.26 16
22 C 0.17 2.30 6.62 -84.84 -0.56 1.73 16
23 N -0.44 -6.81 8.96 -7.47 -0.07 -6.88 16
24 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16
25 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16
26 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16
27 H 0.41 8.37 7.62 -40.82 -0.31 8.06 16
28 H 0.16 1.69 7.60 -52.49 -0.40 1.29 16
29 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16
30 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16
31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16
LS Contribution 301.18 15.07 4.54 4.54
Total: -1.00 -32.51 301.18 -8.09 -40.59
By element:
Atomic # 1 Polarization: 4.57 SS G_CDS: -2.32 Total: 2.25 kcal
Atomic # 6 Polarization: 5.73 SS G_CDS: -3.68 Total: 2.05 kcal
Atomic # 7 Polarization: -52.31 SS G_CDS: 0.23 Total: -52.09 kcal
Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.60 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal
Atomic # 35 Polarization: 0.01 SS G_CDS: -2.27 Total: -2.26 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -32.51 -8.09 -40.59 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568272451.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.785 kcal
(2) G-P(sol) polarization free energy of solvation -32.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds